BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G45201.1 Length=1697 Score E Sequences producing significant alignments: (Bits) Value Ahg473845 jgi|Araly1|473845|fgenesh2_kg.1__3799__AT1G45201.1 2577 0.0 > Ahg473845 jgi|Araly1|473845|fgenesh2_kg.1__3799__AT1G45201.1 Length=1650 Score = 2577 bits (1395), Expect = 0.0 Identities = 1571/1655 (95%), Gaps = 16/1655 (1%) Strand=Plus/Plus Query 14 TTCTCCTTTCTTCTTAT-TTCTGAGCAAAGTTTTTTCTTCCTTTCATATTGTGAGGATGT 72 |||| |||||||||||| || |||||||||||| |||||||||||||||||||| |||| Sbjct 1 TTCTTCTTTCTTCTTATATT-TGAGCAAAGTTTGTTCTTCCTTTCATATTGTGAAAATGT 59 Query 73 CCAAAACCAATATGAAATTTTGCAATAGTTATTTTCTGGTCGATCCGACCAAAGCAAGTT 132 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 CCCAAACCAATATGAAATTTTGCAATAGTTATTTTCTGGTCGATCCGACCAAAGCAAGTT 119 Query 133 TTCTTGATCTCCTTTTGCTTTTGTTTTCCTCCAACCTGACCAGTGCAAGATTCATCGATT 192 |||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 120 TTCTTGATCTCCTTCTGCTTTTGTTTTCCTTCAACCTGACCAGCGCAAGATTCATCGATT 179 Query 193 CTCCTCCGGATACGCTTAAAGGCTTCCGGAGAAGTTTCGCGAGTCGATGGATCCTTGCGT 252 ||||||||||||| || ||| |||||||||||||||| |||||||||||||||||||||| Sbjct 180 CTCCTCCGGATACACTCAAAAGCTTCCGGAGAAGTTTTGCGAGTCGATGGATCCTTGCGT 239 Query 253 TGGCCATCTTCCTTCAAAAAGTATTAATGCTCTTAAGTAAACCTTTTGCA-TTCATTGGT 311 ||||||| || ||||||||||||||||||||||| ||||||||||||||| ||| ||||| Sbjct 240 TGGCCATATTGCTTCAAAAAGTATTAATGCTCTTGAGTAAACCTTTTGCATTTC-TTGGT 298 Query 312 CAAAAGCTCACATATTGGCTCAACCTTCTTACGGCAAATGGAGGCTTCTTCAACTTGATA 371 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 CGTTTGCTCACATATTGGCTCAACCTTCTTACGGCAAATGGAGGCTTCTTCAACTTGATA 358 Query 372 CTTAACCTTATGTCAGGAAAGCTGGTCAAGCCTGACAAATCTTCGGCGACGTATACTTCT 431 ||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 359 CTTAACCTTTTGACAGGAAAGCTGGTGAAGCCTGACAAATCTTCGGCGACATATACTTCG 418 Query 432 TTTATAGGATGCTCAGATCGACGAATAGAGCTTGACGAGAAGATAAATGTTGGTAGCATC 491 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TTTATAGGATGCTCGGATCGACGAATAGAGCTTGACGAGAAGATAAATGTTGGTAGCATC 478 Query 492 GAATACAAATCGATGTTGTCAATAATGGCTTCTAAGATCTCTTATGAGAGCAAACCTTAC 551 |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 479 GAATACAAGTCGATGTTGTCAATAATGGCTTCTAAGATCGCTTATGAGAGCAAACCTTTC 538 Query 552 ATCACTTCCGTCGTCAAAAACACTTGGAAGATGGACTTGGTGGGTAACTACGACTTTTAC 611 ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 539 GTCAATTCCGTCGTCAAGAACACTTGGAAGATGGACTTGGTGGGTAACTACGACTTTTAC 598 Query 612 AACGCTTTCCAAGAAAGTAAATTGACGCAAGCCTTCGTGTTCAAGACTTCGAGCACCAAT 671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AACGCTTTCCAAGAAAGTAAATTGACGCAAGCCTTCGTGTTCAAGACTTCGAGCACCAAT 658 Query 672 CCAGACCTCATCGTCGTTAGCTTCAGAGGAACCGAACCTTTCGAGGCTGCCGATTGGTGC 731 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 659 CCAGACCTCATCGTCGTTAGCTTCAGAGGAACCGAACCTTTCGAAGCTGCCGATTGGTGC 718 Query 732 ACTGATCTCGACCTCTCTTGGTACGAGATGAAGAACGTTGGCAAAGTCCACGCCGGGTTC 791 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 719 ACTGATCTCGACCTCTCTTGGTACGAGTTGAAGAACGTTGGCAAAGTCCACGCTGGGTTC 778 Query 792 TCAAGAGCTTTAGGTCTCCAAAAAGATGGA---TGGCCCAAGGAAAATATTAGTCTACTA 848 |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 779 TCAAGAGCTTTAGGCCTCCAAAAAGATGGAGGATGGCCCAAGGAAAATATAAGTCTTCTA 838 Query 849 CACCAATATGCTTACTACACCATCAGACAGATGCTTAGAGACAAGCTTGGCAGAAACAAG 908 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 839 CACCAATATGCTTACTACACCATCAGACAGATGCTTAGGGACAAGCTTGCCAGAAACAAG 898 Query 909 AACCTTAAATATATTCTAACAGGTCACAGCCTTGGCGGAGCACTAGCTGCTCTTTTCCCG 968 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 899 AACCTTAAGTATATTCTAACAGGTCACAGCCTTGGCGGAGCACTAGCTGCTCTTTTTCCG 958 Query 969 GCGATTCTGGCCATTCACGGTGAGGATGAGCTGCTAGATAAGCTAGAGGGAATCTATACG 1028 |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 959 GCGATTCTAGCGATTCATGGTGAGGATGAGCTGCTAGATAAGCTAGAGGGAATCTATACG 1018 Query 1029 TTTGGACAGCCACGTGTAGGAGATGAGGACTTTGGTGAGTTTATGAAGGGTGTGGTGAAA 1088 |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1019 TTTGGACAACCACGTGTAGGGGATGAGGATTTTGGTGAGTTTATGAAGGGTGTGGTGAAA 1078 Query 1089 AAGCATGGAATAGAGTATGAGAGATTCGTCTATAACAATGATGTTGTGCCTAGAGTGCCC 1148 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 AAGCATGGAATAGAGTATGAGAGATTCGTCTATAACAATGATGTTGTGCCTAGAGTGCCT 1138 Query 1149 TTTGATGACAAGT-ACTTATTCTCATACAAGCACTATGGACCTTGCAATTCCTTCAACAG 1207 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 TTTGATGACAAGTTA-TTATTCTCATACAAGCACTATGGACCTTGCAATTCCTTCAACAG 1197 Query 1208 TCTCTACAAAGGAAAGGTAAGAGAAGATGCACCAAATGCGAACTACTTCAACTTGTTGTG 1267 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1198 TCTCTACAAAGGAAAGGTAAGAGAAGATGCACCAAATGCAAACTACTTCAACTTGTTGTG 1257 Query 1268 GTTAATACCGCAGCTGTTGACTGGTTTGTGGGAGTTTATAAGGAGTTTCATATTACAGTT 1327 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1258 GTTAATACCGCAGCTATTGACTGGTTTGTGGGAGTTTATAAGAAGTTTCATATTACAGTT 1317 Query 1328 TTGGAAAGGCGACGAGTACAAAGAGAATTGGTTAATGAGATTTGTTAGGGTTGTGGGAAT 1387 |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1318 TTGGAAAGGCGAAGATTACAAAGAGAATTGGTTGATGAGATTTGTTAGGGTTGTGGGAAT 1377 Query 1388 AGTGTTCCCTGGTGGCTCTAACCATTTCCCATTTGATTACGTCAACTCTACTCGCCTAGG 1447 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1378 AGTGTTCCCTGGTGGCTCTAACCATTTCCCATTTGATTACGTCAATTCTACGCGCCTAGG 1437 Query 1448 AGGCTTGGTTCGACCTCCTCCTACTACTACTCCTGAGGATAAACTTGCCCTCATTGCTTG 1507 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 1438 AGGCTTGGTTCGACCTCCTCCTAGTACTACTCCTGAAGATAAACTTGCCCTCATTGCTTG 1497 Query 1508 AACTCTCATTATTTAATAATCATATCCACTTTATCTGCCCTAATGACGGTTAAATAATTG 1567 |||||||| | ||| |||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1498 AACTCTCAATGTTTTATAATCCTATCCACTTTATCTGCCCTAATG-CGGTTAAATAATTG 1556 Query 1568 CACTTGAGCTTTAA-TGTATTCTCTGTGTTATGTGTTTT-TGTATGTGAGTTTTTATGTT 1625 ||||||||||||| | ||||||||||||||| ||| || |||| ||||||||||||||| Sbjct 1557 TACTTGAGCTTTAACT-TATTCTCTGTGTTATATGTCTTGTGTACGTGAGTTTTTATGTT 1615 Query 1626 GGTAACAA---TATCTACCTTTTCTTATCTTCTGA 1657 ||||| || ||||||| |||||||||||||||| Sbjct 1616 GGTAATAACACTATCTACTTTTTCTTATCTTCTGA 1650 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63648799395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5