BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45249.3
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473850 jgi|Araly1|473850|fgenesh2_kg.1__3804__AT1G45249.1 1631 0.0
> Ahg473850 jgi|Araly1|473850|fgenesh2_kg.1__3804__AT1G45249.1
Length=1628
Score = 1631 bits (883), Expect = 0.0
Identities = 1107/1209 (92%), Gaps = 39/1209 (3%)
Strand=Plus/Plus
Query 42 GCTCACCAGACAAACTACCTAATCACCCAAACGAAGAACCAAACATTTTGAAATTTTTTG 101
||||| |||||||| |||||||||||||||||||||||||| ||| |||| |
Sbjct 1 GCTCAGCAGACAAAGTACCTAATCACCCAAACGAAGAACCAGACA-TTTG---------G 50
Query 102 GGAAAATTACAAAGCACACGAATTTAGCAAAAAGATCCA-GTTATTAGGTGGAAGCAGAT 160
|| ||| ||| |||||||||||||||||| |||| | | | | || | | | ||||
Sbjct 51 GGCAAA-TACGAAGCACACGAATTTAGCATAAAGGT-AATGGGAATA-ATAGCTG-AGAT 106
Query 161 T-TT-GTAGAAAAATGGATGGTAGTATGAATTTGGGGAATGAGCCACCAGGAGATGGTGG 218
| || | | |||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 107 TATTGGAAAAAAAATGGATGGTAATATGAATTTGGGAAATGAGCCACCAGGAGATGGTGG 166
Query 219 TGGAGGTGGAGGGTTGACTAGACAAGGTTCGATATACTCGTTGACGTTTGATGAGTTTCA 278
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 TGGTGGAGGAGGGTTGACTAGACAAGGTTCGATATACTCGTTGACGTTTGATGAGTTTCA 226
Query 279 GAGCAGTGTAGGGAAAGATTTTGGGTCAATGAACATGGATGAGTTGTTAAAGAATATATG 338
||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 227 GAGCAGTTTAGGGAAAGATTTTGGGTCAATGAACATGGATGAGTTGTTAAAGAACATTTG 286
Query 339 GAGTGCTGAAGAAACACAAGCCATGGCTAGTGGTGTGGTTCCAGTTCTTGGTGGAGGTCA 398
||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 287 GAGTGCTGAAGAAACTCAAGCCATGGCTAGTGGTATGGTTCCAGTTGTTGGTGGAGGTCA 346
Query 399 AGAGGGTTTGCAGCTGCAGAGGCAAGGCTCGTTGACTCTGCCTCGAACGCTTAGTCAGAA 458
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AGAGGGTTTGCAGTTGCAGAGGCAAGGCTCGTTGACTCTGCCTCGAACGCTTAGTCAGAA 406
Query 459 GACGGTTGATCAAGTTTGGAAAGATCTATCCAAAGTTGGAAGTAGTGGAGTAGGGGGAAG 518
|||||||||||||||||||||||||||||| |||||||||| |||| ||| ||| ||||
Sbjct 407 GACGGTTGATCAAGTTTGGAAAGATCTATCTAAAGTTGGAAATAGTAGAGGAGGAGGAAC 466
Query 519 TAACTTGTCTCAGGTGGCTCAGGCTCAGAGTCAGAGTCAGAGTCAGAGGCAGCAAACATT 578
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 467 AAACTTGTCTCAGGTGGCTCAGGCTCAGAGTCAGAGTCAGAGTCAGAGGCAACAAACGTT 526
Query 579 AGGTGAAGTAACTTTGGAGGAGTTTTTGGTTCGTGCTGGTGTTGTGAGAGAGGAAGCTCA 638
|||||||||||||||||||||||||||||| ||||| |||||||| || | || |
Sbjct 527 AGGTGAAGTAACTTTGGAGGAGTTTTTGGTCCGTGCAGGTGTTGT----GA-G-AG---A 577
Query 639 GGTTGCTGCAAGAGCTCAGATTGCTGAGAACAATAAAGGCGGTTACTTTGGTAATGATGC 698
| | | |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 578 ----G--G--A-AGCTCAGATTGCTGAGAATAATAAAGGCGGTTACTTTGGTAATGATGC 628
Query 699 CAACACAGGTTTCTCTGTCGAGTTTCAGCAGCCTTCTCCACGAGTTGTTGCCGCTGGTGT 758
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 TAACACTGGTTTCTCTGTCGAGTTTCAGCAGCCTTCTCCACGAGTTGTTGCCGCTGGTGT 688
Query 759 AATGGGAAATCTTGGTGCAGAGACTGCAAATTC-TTTGCAGGTTCAAGGTTCTAGTTTGC 817
||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||
Sbjct 689 AATGGGAAATCTTGGTGCAGAGACTGCGAAT-CATTTACAGGTTCAAGGTTCTAGTTTGC 747
Query 818 CTCTGAATGTGAATGGAGCTAGAACAACATACCAGCAATCGCAACAGCAACAGCCAATCA 877
|||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||
Sbjct 748 CTCTGAATGTAAATGGAGCTAGATCAACATACCAGCAGCCGCAACAGCAACAACCAATCA 807
Query 878 TGCCTAAGCAGCCTGGTTTTGGTTATGGAACACAAATGGGTCAGCTTAATAGTCCTGGGA 937
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 808 TGCCTAAGCAGCCTGGTTATGGTTATGGAACACAAATAGGTCAGCTTAATAGTCCTGGGA 867
Query 938 TAAGAGGTGGTGG-TCTTGTGGGACTTGGAGATCAGTCTTTAACGAACAATGTGGGCTTT 996
||||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 868 TAAGAGGTG-TGGGTCTTATGGGACTTGGAGATCAGTCTTTAACGAACAATATGGGCTTG 926
Query 997 GTCCAAGGTGCTTCTGCTGCAATTCCTGGAGCTTTAGGCGTTGGTGCTGTGTCGCCTGTT 1056
|||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 927 GTCCAAGGTGCTGCTGCTGCAATTCCTGGAGCTTTGGGCATTGGTGCTGTGTCGCCTGTT 986
Query 1057 ACGCCATTGTCATCAGAAGGGATAGGGAAGAGTAATGGTGATTCTTCATCACTCTCTCCG 1116
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 987 ACACCATTGTCATCAGAAGGGATAGGGAAGAGTAATGGTGATTCTTCATCGCTCTCTCCG 1046
Query 1117 TCTCCTTACATGTTTAATGGTGGTGTGAGAGGTAGAAAGAGTGGCACTGTGGAGAAAGTT 1176
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1047 TCTCCTTACATGTTTAATGGTGGTGTGAGAGGCAGAAAGAGTGGGACTGTGGAGAAAGTT 1106
Query 1177 GTAGAGAGAAGGCAAAGGAGAATGATAAAGAACCGAGAATCAGCTGCAAGGTCCCGGGCC 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1107 GTAGAGAGAAGGCAAAGGAGAATGATAAAGAACCGAGAATCAGCTGCAAGGTCACGGGCC 1166
Query 1237 AGGAAACAG 1245
|| ||||||
Sbjct 1167 AGAAAACAG 1175
Score = 588 bits (318), Expect = 5e-167
Identities = 369/393 (94%), Gaps = 6/393 (2%)
Strand=Plus/Plus
Query 1279 GCTTACACCGTGGAGCTTGAAGCTGAAGTTGCAAAGTTAAAGGAAGAGAATGACGAGTTA 1338
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1176 GCTTACACCGTGGAGCTTGAAGCGGAAGTTGCAAAGTTAAAGGAAGAGAATGACGAGTTA 1235
Query 1339 CAACGAAAGCAGGCAAGGATCATGGAAATGCAAAAGAATCAGGAGACGGAGATGAGGAAT 1398
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1236 CAACGAAAGCAGGCAAGGATCATGGAAATGCAAAAGGATCAGGAGATGGAGATGAGGAAT 1295
Query 1399 CTTCTGCAAGGAGGTCCAAAGAAAAAGCTGAGGAGGACAGAGTCGGGACCTTGGTGAATC 1458
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1296 CTTCTGCAAGGAGGACCAAAGAAAAAGCTGAGAAGGACAGAGTCAGGACCTTGGTGAATC 1355
Query 1459 AATCAATGCCATCATACTTAGTTTCTGTAGATA-AATGACATCCCACTTAGGTGTTTTAG 1517
||||| ||| ||||||||||| |||||||||| ||| ||||||||||||||||||| ||
Sbjct 1356 AATCAGTGC--TCATACTTAGTGTCTGTAGATAGAATCACATCCCACTTAGGTGTTT-AG 1412
Query 1518 TTGAATTAGACTTAATAGAGAAGAGCTTTCATCGTTTATATTGTAAGCTCTCTCCATATA 1577
||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1413 TTGAAGAAGACTTAATAGAAAAGAGCTTTCATCATTTATATTGTAAGCTCTCTCCATATA 1472
Query 1578 TGTTATGTTTTTTACATACACAGGATCATCAGAATCTCTTTTGCTTTATTTAGACCAAGA 1637
||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1473 TGTTATGTTTTATACATACACAGGATCATCAGAATCACTTTTTCTTTAATTAGACCAAGA 1532
Query 1638 ATTTTGTGTGTGTTT-CTCGTTGTTGTTTGTCG 1669
|||||||||||||| ||||||||||| |||||
Sbjct 1533 -TTTTGTGTGTGTTTTCTCGTTGTTGTATGTCG 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63648799395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5