BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G45474.1 Length=913 Score E Sequences producing significant alignments: (Bits) Value Ahg473855 jgi|Araly1|473855|fgenesh2_kg.1__3809__AT1G45474.1 1445 0.0 > Ahg473855 jgi|Araly1|473855|fgenesh2_kg.1__3809__AT1G45474.1 Length=906 Score = 1445 bits (782), Expect = 0.0 Identities = 869/911 (95%), Gaps = 6/911 (1%) Strand=Plus/Plus Query 1 AGAGTCAGAACAGAACAAAAACGTAAGCaaaaaaaaaTAAAACAGAGCAAAATGGCCGTA 60 ||||||||||||||||| |||||||| | |||||| |||||||||||||||||||||| Sbjct 1 AGAGTCAGAACAGAACACAAACGTAA--ACCAAAAAA-AAAACAGAGCAAAATGGCCGTA 57 Query 61 GTTTTACGTGGAGGCATCACCGGAGGATTTCTTCACCATCGTCGTGACGCTTCATCCGTC 120 |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| Sbjct 58 GTTTTACGTGGAGGCATCACCGGAGGATTTCTTCACCAACGTCGCGACACTTCATCCGTC 117 Query 121 ATCACAAGAAGAATCTCATCCGTCAAAGCCGCAGGAGGAGGCATCAACCCAACGGTGGCT 180 || |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 118 ATAACAAGAAGAATCTCATCCGTCAGAGCCGCAGGAGGAGGCATCAACCCAACAGTGGCT 177 Query 181 GTTGAACGTGCCACGTGGCTACCTGGACTAAACCCTCCTCCTTATCTTGATGGAAATTTA 240 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 178 GTTGAACGTGCCACGTGGCTACCTGGCCTCAACCCTCCTCCTTATCTTGATGGAAAGTTA 237 Query 241 GCTGGAGATTACGGGTTTGACCCACTCGGGTTAGGAGAGGATCCGGAAAGCTTGAAG-TG 299 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || || Sbjct 238 GCTGGAGATTACGGGTTTGACCCACTCGGGTTAGGAGAGGATCCAGAAAGTTTG-AGATG 296 Query 300 GTATGTTCAAGCAGAGCTTGTTCACTCTCGTTTCGCTATGCTCGGTGTTGCAGGAATACT 359 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 297 GTATGTTCAAGCAGAACTTGTTCATTCTCGTTTCGCTATGCTCGGTGTTGCAGGAATACT 356 Query 360 CTTCACTGATCTCCTTCGGACCACAGGGATTCGTAATTTACCGGTTTGGTATGAAGCTGG 419 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 CTTCACCGATCTGCTTCGGACCACAGGGATTCGTAATTTACCGGTTTGGTATGAAGCTGG 416 Query 420 AGCTGTGAAATTTGATTTTGCTAGTACAAAAACTCTCATAGTTGTACAGTTTCTACTTAT 479 |||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||||| Sbjct 417 AGCTGTCAAATTTGATTTTGCTAGCACAAAAACACTCATAGTTGTACAGTTTTTACTTAT 476 Query 480 GGGGTTTGCTGAGACTAAAAGGTATATGGATTTTGTCTCTCCGGGATCACAAGCCAAAGA 539 ||||||||||||||||||||||||| |||||| |||||||||||| || ||||||||||| Sbjct 477 GGGGTTTGCTGAGACTAAAAGGTATGTGGATTATGTCTCTCCGGGCTCTCAAGCCAAAGA 536 Query 540 AGGATCGTTTTTCTTTGGACTTGAAGCAGCACTCGAGGGGCTCGAGCCTGGATATCCCGG 599 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 AGGATCTTTTTTCTTTGGACTTGAAGCAGCACTCGAGGGGCTCGAGCCTGGATATCCCGG 596 Query 600 AGGACCGCTTTTAAACCCATTAGGCCTTGCTAAGGATGTTCAAAATGCTCATGACTGGAA 659 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 597 AGGACCGCTTTTAAACCCATTAGGCCTTGCTAAGGATATTAAAAATGCTCATGACTGGAA 656 Query 660 GCTTAAGGAGATCAAGAACGGTCGTCTAGCGATGATGGCGATGCTCGGGTTCTTTGTTCA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GCTTAAGGAGATCAAGAACGGTCGTCTAGCGATGATGGCGATGCTCGGGTTCTTTGTTCA 716 Query 720 AGCCTCTGTGACTCACACTGGCCCTATTGATAACCTTGTTGAGCATCTCTCTAATCCATG 779 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 717 AGCCTCTGTGACTCACACTGGCCCTATCGATAACCTTGTCGAGCATCTCTCTAATCCATG 776 Query 780 GCATAAGACCATCATTCAAACCCTCTTCACCTCTACATCTTAGGTACATTCTTTTGTAAT 839 ||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| Sbjct 777 GCATAAGACCATCATTCAAACCCTCTTCAGCTCTGCTTCTTAGGTACATTCTTTTGTAAC 836 Query 840 GAAAAATTCGATTATTCGACAAGTGTATCAATACCTTTATTTCATTTAAGAGTACAACAA 899 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 GAAAA-TTCGATTATTCGACAAGTGTATCAATACCTTTATTTCATTTAAGAGTACAACAA 895 Query 900 ATCTGTTCTAA 910 |||| |||||| Sbjct 896 ATCTATTCTAA 906 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33853150296 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5