BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G46768.1 Length=836 Score E Sequences producing significant alignments: (Bits) Value Ahg922994 jgi|Araly1|922994|scaffold_104275.1 739 0.0 > Ahg922994 jgi|Araly1|922994|scaffold_104275.1 Length=511 Score = 739 bits (400), Expect = 0.0 Identities = 474/511 (93%), Gaps = 0/511 (0%) Strand=Plus/Plus Query 8 CCCAAAAGTTTGTCTTTTATCAATGGAAAGAGAACAAGAAGAGTCTACGATGAGAAAGAG 67 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 CCCAAAAGTTTGTCTTTTATCAATGGAAAGAGAACAAGAAGAGTCTACGATGCGAAAGAG 60 Query 68 AAGGCAGCCACCTCAAGAAGAAGTGCCTAACCACGTGGCTACAAGGAAGCCGTACAGAGG 127 |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| Sbjct 61 AAGGCAGCCACCTCAAGAAGAAATGGCTAGCCACGTGGCTACAAGGAAGCCGTACAGAGG 120 Query 128 GATACGGAGGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGTGAGCCTAACAAACGCTC 187 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 121 GATACGGAGGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGTGAGCCTAACAAACGTTC 180 Query 188 ACGGCTTTGGCTTGGCTCTTACACAACCGATATCGCCGCCGCTAGAGCCTACGACGTGGC 247 ||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||||| || Sbjct 181 ACGTCTTTGGCTCGGCTCATACACAACCGATGTCGCCGCCGCTAGAGCCTACGACGTCGC 240 Query 248 CGTCTTCTACCTCCGTGGCCCCTCCGCACGTCTCAACTTCCCTGATCTTCTCTTGCAAGA 307 ||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||| Sbjct 241 CGTCTTCTACCTCCGTGGCCCCTCCGCGCGCCTCAACTTCCCCGATCTTCTCTTACAAGA 300 Query 308 AGAGGACCATCTCTCAGCCGCCACCACCGCTGACATGCCCGCAGCTCTTATAAGGGAAAA 367 || ||||| | ||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 301 GGATGACCACCGATCAGCCGCCACCACCGCGGACATGCCCGCAGCTCTTATTCGGGAAAA 360 Query 368 AGCGGCGGAGGTCGGCGCCAGAGTCGACGCTCTTCTAGCTTCTGCCGCTCCTTCGATGGC 427 |||||||| |||||||| |||||||||||||| || ||||| || |||||||||| ||| Sbjct 361 GGCGGCGGAAGTCGGCGCTAGAGTCGACGCTCTCCTTGCTTCCGCTGCTCCTTCGACGGC 420 Query 428 TCACTCCACTCCGCCGGTAATAAAACCCGACTTGAATCAAATACCCGAATCCGGAGATAT 487 | ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 421 TGACTCCTCTCGGCCGGTAATAAAACCCGATTTGAATCAAATACCCGAATCCGGAGATAT 480 Query 488 ATAGTCAATTTATATACATGTAGTTTGTTTT 518 |||||||| ||||| || ||||||||||||| Sbjct 481 ATAGTCAAATTATACACTTGTAGTTTGTTTT 511 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30917685687 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5