BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47128.1
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473866 jgi|Araly1|473866|fgenesh2_kg.1__3820__AT1G47128.1 2634 0.0
Ahg318695 jgi|Araly1|318695|fgenesh1_pm.C_scaffold_3001711 145 1e-33
> Ahg473866 jgi|Araly1|473866|fgenesh2_kg.1__3820__AT1G47128.1
Length=1666
Score = 2634 bits (1426), Expect = 0.0
Identities = 1599/1681 (95%), Gaps = 18/1681 (1%)
Strand=Plus/Plus
Query 1 CATACAATCGTCTTCTTCATCATTTTCTCTTCTTCTTCTCCAAGAAAACACTGAAGAAG- 59
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 CATACAATCGTCTTCTTCATCATTTTCTCTTCTTCTTCTCCAAGAAAACAGTGAAGAAGA 60
Query 60 AAATGGGGTTCCTTAAGCCAACCATGGCGATTCTTTTTCTAGCGATGGTCGCCGTTTCAT 119
|||||||||||||||||||| |||| ||||| ||||| |||||||||||||||||| |||
Sbjct 61 AAATGGGGTTCCTTAAGCCAGCCATAGCGATCCTTTTCCTAGCGATGGTCGCCGTTGCAT 120
Query 120 CAGCCGTGGACATGTCAATCATCTCCTACGACGAGAAACATGGCGTCTCCACCACCGGTG 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CAGCCGTGGACATGTCAATCATCTCCTACGACGAGAAACACGGCGTCTCCACCACCGGTG 180
Query 180 GCCGTAGCGAAGCCGAGGTTATGAGTATCTACGAGGCATGGTTGGTGAAACACGGCAAGG 239
|||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 181 GCCGTAGCGACGCAGAGGTCATGAGTATCTACGAGGCGTGGTTGGTGAAACACGGGAAGG 240
Query 240 CTCAGAGCCAGAACTCTCTTGTTGAGAAAGATCGACGGTTCGAGATCTTTAAAGACAATC 299
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 241 GTCAGAATCAGAACTCTCTTGTTGAGAAAGATCGACGTTTCGAGATCTTTAAAGATAATC 300
Query 300 TTCGTTTCGTCGATGAACATAACGAGAAGAATCTTAGTTATAGATTGGGTTTGACTCGTT 359
|||||||| |||| || |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 301 TTCGTTTCATCGACGATCATAACAAGAAGAATCTTAGTTATAGATTGGGTTTGACTCGGT 360
Query 360 TTGCGGATCTTACTAACGATGAGTATAGATCCAAGTATCTTGGAGCTAAGATGGAGAAGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGCGGATCTTACTAACGATGAGTATAGATCCAAGTATCTTGGAGCTAAGATGGAGAAGA 420
Query 420 AAGGTGAGAGAAGGACTAGCCTACGGTACGAGGCTCGTGTCGGTGATGAGCTACCGGAGT 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 421 AAGGTGAGAGAAGGACTAGCCAACGGTACGAGGCTCGTGTCGGTGATGAGCTACCAGAGT 480
Query 480 CTATTGACTGGAGGAAGAAAGGAGCCGTGGCTGAGGTCAAAGATCAGGGTGGTTGCGGGA 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 CTATTGACTGGAGGAAGAAAGGAGCCGTGGCTGAGGTCAAAGATCAGGGTAGTTGCGGGA 540
Query 540 GTTGTTGGGCGTTTTCAACCATTGGAGCAGTGGAGGGAATAAACCAGATCGTAACCGGAG 599
|||||||||| || ||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 541 GTTGTTGGGCATTCTCAACCACTGGAGCAGTGGAGGGGATTAACCAGATCGTAACCGGAG 600
Query 600 ACCTAATAACCTTGTCTGAACAAGAGTTGGTCGATTGTGACACTTCATACAACGAAGGTT 659
|| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACTTAATATCCTTGTCCGAACAAGAGTTGGTCGATTGTGACACTTCATACAACGAAGGTT 660
Query 660 GTAACGGAGGTCTTATGGACTATGCTTTTGAGTTCATTATCAAGAATGGTGGAATCGATA 719
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTAACGGAGGTCTCATGGACTATGCTTTTGAGTTCATTATCAAGAATGGTGGAATCGATA 720
Query 720 CAGACAAAGATTATCCTTACAAGGGTGTTGATGGAACTTGTGACCAGATCAGGAAAAACG 779
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 CAGAAAAAGATTATCCTTACAAGGGTGTCGATGGAACTTGTGACCAGATCAGGAAAAACG 780
Query 780 CTAAAGTTGTCACTATCGATTCATATGAGGATGTTCCAACTTACAGCGAGGAATCGTTGA 839
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 781 CTAAAGTTGTCACAATCGATTCATATGAGGATGTTCCCACTTACAGCGAGGAATCGTTGA 840
Query 840 AGAAAGCAGTTGCTCATCAACCCATTAGCATTGCCATTGAGGCTGGTGGTCGTGCGTTCC 899
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 841 AGAAAGCAGTTGCTCATCAACCCGTTAGCGTCGCCATTGAGGCTGGTGGTCGTGCGTTCC 900
Query 900 AGCTCTATGATTCGGGTATATTTGATGGAAGTTGTGGAACACAACTAGACCACGGAGTTG 959
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 901 AGCTCTATGATTCGGGTATATTTGATGGAACTTGTGGAACACAACTAGACCATGGAGTTG 960
Query 960 TGGCGGTTGGATACGGAACTGAGAACGGCAAAGATTACTGGATTGTGAGAAACTCATGGG 1019
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 961 TGGCGGTCGGATACGGAACCGAGAACGGCAAAGACTACTGGATTGTGAGAAACTCATGGG 1020
Query 1020 GTAAAAGCTGGGGAGAGAGTGGATACCTAAGGATGGCGCGTAACATTGCGTCTTCATCAG 1079
|||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||| |
Sbjct 1021 GTAAAAGCTGGGGAGAGAGTGGATACTTAAAGATGGAGCGTAACATCGCGTCTTCATCCG 1080
Query 1080 GAAAATGTGGAATCGCGATTGAACCTTCATACCCGATAAAGAATGGCGAAAACCCGCCAA 1139
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1081 GAAAATGTGGAATCGCGATTGAACCTTCATACCCGATCAAGAATGGCGAAAACCCGCCAA 1140
Query 1140 ACCCGGGACCTTCACCTCCATCTCCCATCAAGCCTCCAACCCAATGTGACAGTTACTACA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ACCCGGGACCTTCACCTCCATCTCCCATCAAGCCTCCAACCCAATGTGACAGTTACTACA 1200
Query 1200 CTTGTCCTGAGAGCAACACTTGTTGTTGTCTGTTTGAGTATGGCAAGTATTGCTTTGCTT 1259
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1201 CTTGTCCAGAGAGCAACACTTGTTGTTGTCTGTTTGAGTATGGAAAGTATTGCTTTGCTT 1260
Query 1260 GGGGATGTTGCCCACTAGAAGCAGCCACTTGCTGTGATGACAACTATAGTTGCTGCCCTC 1319
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1261 GGGGATGTTGCCCACTAGAAGCTGCCACTTGCTGTGATGACAACTATAGTTGCTGCCCGC 1320
Query 1320 ACGAGTACCCGGTTTGTGACCTTGATCAAGGAACCTGTTTATTGAGCAAGAACAGTCCAT 1379
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1321 ACGAGTACCCGGTTTGTGACCTTGATCAGGGAACCTGTTTATTGAGCAAGAACAGTCCAT 1380
Query 1380 TTAGTGTTAAGGCCTTAAAGCGTAAACCCGCAACGCCATTCTGGTCACAAGGCAGAAAGA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TTAGTGTTAAGGCCTTAAAGCGTAAACCCGCAACGCCATTCTGGTCACAAGGCAGAAAGA 1440
Query 1440 ACATTGCCTAAA-CATTGCTTCTTCAAGAGGACTCTGGCTCATGAGAGAAGAGATCTCTC 1498
|||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 1441 ACATTGCCTAAAACATTGCTTCTTCA------C--------ATGAGAGAAGAGATCTCTC 1486
Query 1499 TGAAGGGATTTATCAGATGCTTTTTAATGTTGTTGTTTATGCCATAACTAGATACATAAA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 TGAAGGGATTTATCAGATGCTTTTTAATGTTGTTGTTTATGCCATAACTAGATACATAAA 1546
Query 1559 AAATGCAGCTGTTGGG-TTTCGTGTATATaaaaaaaGGACCCTATGTTTCATTCAGTTTC 1617
|| ||||||| ||||| |||||||| ||| ||||||| |||||| |||||||||||||||
Sbjct 1547 AA-TGCAGCTTTTGGGGTTTCGTGTGTATTAAAAAAGCACCCTAAGTTTCATTCAGTTTC 1605
Query 1618 ATAGTTGGGTTTCATTGATACAGTACATTTATTGTTAATTCAAGAAAATTGAATATTTAT 1677
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1606 ATAGTTGGGTTTCATTGATACAGTAAATTTATTGTTAATTCAAGAAAATTTAATATTTAT 1665
Query 1678 G 1678
|
Sbjct 1666 G 1666
> Ahg318695 jgi|Araly1|318695|fgenesh1_pm.C_scaffold_3001711
Length=927
Score = 145 bits (78), Expect = 1e-33
Identities = 183/232 (79%), Gaps = 13/232 (6%)
Strand=Plus/Plus
Query 515 GTCAAAGATCAGGGTGGTTGCGGGAGTTGTTGGGCGTTTTCAACCATTGGAGCAGTGG-A 573
||||||||||| || || || ||||||||||||||||| | |||||||||||| |
Sbjct 271 GTCAAAGATCAAGGAAACTGTGGAAGTTGTTGGGCGTTTTCTGCGGTTGGAGCAGTGGAA 330
Query 574 GGGAATAAACCAGATCGTA-ACCGGAGACCTAATAACCTTGTCTGAACAAGAGTTGGTCG 632
||| |||||||||||| | |||||||| | ||| | ||||| || ||||| | | |
Sbjct 331 GGG-ATAAACCAGATC-AAGACCGGAGAATTGATATCTTTGTCAGATCAAGAACTCATTG 388
Query 633 ATTGTGAC--A--CTTCATACAACGAAGGTTGT-AACGGAGGTCTTATGGACTATGCTTT 687
| |||||| | ||| | |||| || ||| || |||||||| ||||||||||||||
Sbjct 389 ACTGTGACAGAGGCTTTGT-TAACGCTGGATGTGAA-GGAGGTCTCATGGACTATGCTTT 446
Query 688 TGAGTTCATTATCAAGAATGGTGGAATCGATACAGA-CAAAGATTATCCTTA 738
|||||||||||||||||||||||| || || ||||| ||| ||||| |||||
Sbjct 447 TGAGTTCATTATCAAGAATGGTGGTATTGAGACAGATCAA-GATTACCCTTA 497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66200845810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5