BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47310.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473912 jgi|Araly1|473912|fgenesh2_kg.1__3866__AT1G47310.1 1967 0.0
> Ahg473912 jgi|Araly1|473912|fgenesh2_kg.1__3866__AT1G47310.1
Length=1484
Score = 1967 bits (1065), Expect = 0.0
Identities = 1359/1500 (91%), Gaps = 24/1500 (2%)
Strand=Plus/Plus
Query 27 CCAGGCAGGCTCATGTCATGTGAATCTTGCCACATCACTAACATAATTAATATCGGAAAA 86
||||||| |||||||||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct 1 CCAGGCATGCTCATGTCATGTGAAACTTGCCACATCACTAAAATAATCGATATCGGAAAA 60
Query 87 CTTCAATGGGTGTTATCGTCATTTCCCTAAAAAGAACAACGAGACAATCGACGGTTACGG 146
|||||||||| ||||||||||||||| |||||||| | ||||||| |||||||||||||
Sbjct 61 CTTCAATGGGCGTTATCGTCATTTCCTTAAAAAGAGCCGCGAGACAGTCGACGGTTACGG 120
Query 147 CGGCGTAAACCTTATCGGACGAATGAAGATCTGTCGCTCTCCTTCCTCCGTCGTACTCTC 206
||||||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||
Sbjct 121 CGGCGTAAACCTTATCGGACGAATGAAGATCTGCCGTTCTCCTTTCTCCATCGTACTCTC 180
Query 207 TCTATTCATCCAAGTCCTTACTCTAGCCGTCGCTCTCGATCCTTCGCAGCCAGACGAATC 266
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 181 TCTATTCATCCAAGTCCTTACTCTAGCCATAGCTCTCGATCCTTCGCAGCCAGACGAATC 240
Query 267 CAACATCACCGCAACACCGATTCTACAGGATGTGCTGAAGGAGATATCGGTGAAGCAGAA 326
|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 241 CAACATCACCACAACACCGATTCTACAGGATGTGTTAAAGGAGATATCGGTGAAGCAGAA 300
Query 327 GTGGAATCTAGAGGAAGTTAGATTTTCGAAATTGGAAGTTAAGAAGATTCGTATTGGTAC 386
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGGAATCTGGAGGAAGTTAGATTTTCGAAATTGGAAGTTAAGAAGATTCGTATTGGTAC 360
Query 387 GAGTCGGAGATTTGAGATCCGGATCCGATTAGGGAAGAGCAGATTCGTATTCATCTTCCC 446
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 361 GGGTCGGAGATTTGAGATCCGGATCCGATTAGGGAAGAGCAGATTTGTATTTATCTTCCC 420
Query 447 GGATGAAATAACAGATTGGAGAAGAAGCGGCGGGGGTAGTGATGTTGAGTTGCAGGAACT 506
|||||| |||| |||||||||||||||||||| || || ||||| |||||||||||| |
Sbjct 421 TGATGAAGTAACTGATTGGAGAAGAAGCGGCGGAGGAAGAGATGTGGAGTTGCAGGAAGT 480
Query 507 AGTTCGGGAAGTTAATTCGAGTAAGGTTCTTGATCCGCCGCTTGTATTGAAAGGTCCATT 566
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 AGTTAGGGAAGTTAATTCGAGTAAGGTTCTTGATCCGC---TTGTATTGAAAGGTCCATT 537
Query 567 TGAGCTACTTGTCGATGGCAATGATCGTCTCTCGCTTTCGTTACCGATGAACATTTCACA 626
|||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||| ||
Sbjct 538 TGAGCTACGAGTCGATGGCGATGATCATCTCTCGCTTTCGTTGCCGATGAACATTTCGCA 597
Query 627 TAGCGGTTTAAAACGAGTTCTTGTGAGTGAGGGCATCTCAGTAGAAATAAGGGAAGCTCA 686
| ||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 598 CAACGGCTTAAAACGAGTGCTTGTGAGTGAAGGCATTTCAGTAGAAATAAGGGAAGCTCA 657
Query 687 AGCAGTCTCTCTATTCCACTCATCCCATCGAAGATACGCTGCTACTGTCGATCCTGTAAA 746
|||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 658 AGCAGTCTCTCTTTTCCACTCATCCCATCGAAGATACGCTGCTACTGTAGATA-TG-AAA 715
Query 747 TATTAAAGAAGGAAGTTCTTTATGGTCGTTTTGGGGTTCTGTGTGTGTGCCATTGCCTCC 806
| | ||| | || ||||| |||||||| || ||||||||||||||| | || ||
Sbjct 716 -A--ACGGAA--A--TTGTTTATTGTCGTTTTTAGGCTCTGTGTGTGTGCCACTACCACC 768
Query 807 CATACAAATCATAGGGTCAGCTTCATTGGTTGCGTTTAGGACTTCAAATGCA-ACTACGC 865
|||||||||| |||| |||||||||||||| || |||||||| ||||| | | | | |
Sbjct 769 CATACAAATCTTAGGATCAGCTTCATTGGTGGCATTTAGGACATCAAACACGGATTCC-C 827
Query 866 AAATCAAGACTTCGTACTTATCAGATGAGGCAATCCATTTA-TATGCAGAAAAATGTTAT 924
||||||||||||| |||||||| |||||||||||||| ||| | | |||| |||||||||
Sbjct 828 AAATCAAGACTTCATACTTATCCGATGAGGCAATCCAGTTACT-TCCAGATAAATGTTAT 886
Query 925 TATAAAGCTCACACGTACAGGCAGCATCGGTTCCCAAATGATCTTCTTGGCTTAAAGATC 984
| |||||| ||||||||| ||||||||| ||||||| ||||||||||||||| |||||
Sbjct 887 GACAAAGCTAACACGTACAAGCAGCATCGTTTCCCAACTGATCTTCTTGGCTTGAAGATT 946
Query 985 CACAAGTTGGAGAAAGTTCTGAACTCTTTAGGGAATGGAACACGACAAACAGTGAGTTCT 1044
||||||| || |||||||||| |||||||||||||||||| ||||||||||| || |||
Sbjct 947 AACAAGTTAGAAAAAGTTCTGAGCTCTTTAGGGAATGGAACCCGACAAACAGTAAGCTCT 1006
Query 1045 GTAACAGCTAAACTAAAGGCATCAGGAATGGTACGGTTTCAGTTAGAGATCGAGAGAAGT 1104
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GTAACAGCAAAACTAAAGGCATCAGGAATGGTACGGTTTCAGTTAGAGATCGAGAGAAGT 1066
Query 1105 ATTGGGAAGAATGAGAGTGTGATAAGTAAAAAAGTAGCA-TGGAGAACAAAACCGAAGAT 1163
||||||||||| ||||||||| ||||||||| ||||| | ||||||||||||||||||||
Sbjct 1067 ATTGGGAAGAACGAGAGTGTGTTAAGTAAAAGAGTAG-AGTGGAGAACAAAACCGAAGAT 1125
Query 1164 CGAACGGGTTTGGTTTGAAGTAACGGCGAAAATCGAAGGAGATAAGTTGAAAGCAGTGAG 1223
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |
Sbjct 1126 CGAACGGGTTTGGTTTGAAGTAACAGCGAAAATTGAAGGAGATAAGTTAAAAGCAGTGGG 1185
Query 1224 GCTGAGAAAAGTAGTGCCTTTCATTGAAGTGGATACAGAAGCATGGAGCAGTTTGATGTC 1283
| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1186 GATGAGAAAAGTAGTGCCTTTCATAGAAGTGGATACAGAAGCATGGAGCAGTTTAATGTC 1245
Query 1284 TAACATGTCATTCACAAAGTTTCCATCATTACTTGTTCCTCAAGAAGCTTTAACACTCGA 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TAACATGTCATTCACAAAGTTTCCATCATTACTTGTTCCTCAAGAAGCTTTAACACTCGA 1305
Query 1344 TGTCAAATGGTAGGCGCAACACTTTTATACGTTTGATAATCTTCCATAA-GGCAGAAACC 1402
|||||||||||||||||||||||||| || || | ||| | || ||||| ||||
Sbjct 1306 TGTCAAATGGTAGGCGCAACACTTTTGTAAGTAACTTTGTCTAA-AGAATGGCAGGAACC 1364
Query 1403 ACAGTGTAACGATGGATTGTATTTACT--CG-TCCT-TGTATGTATGTATATACTTCTGG 1458
||| ||||| ||||||||||||||||| || | | |||||||||||||||||||||||
Sbjct 1365 ACAATGTAATGATGGATTGTATTTACTTGCGCTTGTATGTATGTATGTATATACTTCTGG 1424
Query 1459 TTCTGTAAAGGATTATTTATCACGAAAACTGGTGAAAGGAGTTGTTACGAATCATTGCAT 1518
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1425 TTCTATAAAGGATTATTTATCACGAAAATTGGTGAAAGGAGTTGTTACGAATCATTGCAT 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5