BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47510.1
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923049 jgi|Araly1|923049|scaffold_104330.1 1668 0.0
> Ahg923049 jgi|Araly1|923049|scaffold_104330.1
Length=1046
Score = 1668 bits (903), Expect = 0.0
Identities = 999/1046 (96%), Gaps = 4/1046 (0%)
Strand=Plus/Plus
Query 80 CCTTTTACA-GAGTAACACTACATGCCGACAATGGGGAATAAGAATTCGATGTGTGGGTT 138
||||||| | ||| |||||| ||||| |||||||||||||| |||||||||||||||| |
Sbjct 1 CCTTTTA-AGGAGAAACACTGCATGCAGACAATGGGGAATACGAATTCGATGTGTGGGCT 59
Query 139 AAAAAGGTTTCCGAACTACAAGAAGTCTCCGATCGGTTCATTTGCGAAAAACTCATCATC 198
|||||||||| | |||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 60 AAAAAGGTTTTCAAACTACAAGAAGTCTCCGATAGGTTCGTTTGCAAAAAACTCATCATC 119
Query 199 TCACGACGGTATTAAAACAATCGAAGCTGTTAACAGTTGCAGTTTTTCTAGAAAAGCAGA 258
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 120 TCACGATGGTATTAAAACAATTGAAGCTGTTAAGAGTTGCAGTTTTTCTAGAAAAGCAGA 179
Query 259 TCTTTGCATCCGTATCATCACATGGAACATGAATGGAAATGTTTCGTATGAGGATTTAGT 318
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TCTTTGCATCCGTATTATCACTTGGAACATGAATGGAAAGGTTTCGTATGAGGATTTAGT 239
Query 319 TGAGCTTGTTGGCAAAGAAAGGAAGTTCGATTTGCTTGTCGTTGGCTTGCAAGAAGCTCC 378
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 TGAGCTTGTTGGCAAAGAAAGGAAGTTCGATTTGCTTGTCGTTGGCTTGCAAGAGGCTCC 299
Query 379 CAAAGCAAACGTTGATCAACTTTTGCAGACAGCTTCATCTCCAACTCACGAGCTTCTTGG 438
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 TAAAACAAACGTTGATCAACTTTTGCAAACAGCTTCATCTCCAACTCACGAGCTTCTTGG 359
Query 439 GAAGGCGAAATTGCAATCGGTCCAGTTATATTTGTTTGGGCCAAAGAATTCACATACATT 498
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAAGGCGAAATTGCAATCGATCCAGTTATATTTGTTTGGGCCAAAGAATTCACATACATT 419
Query 499 AGTAAAAGAATTAAAGGCAGAGAGATATTCGGTAGGAGGATGTGGAGGTTTAATAGGAAG 558
|||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 420 AGTAAAAGAATTAAAGACAGAGAGACATTCAGTAGGAGGATGTGGAGGTTTAATAGGAAG 479
Query 559 aaaaaaaGGAGCCGTGGCTATTCGTATTAACTACGATGACATCAAAATGGTTTTTATCTC 618
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 AAAAAAAGGAGCCGTGGCTATTCGTATTAACTACGATGATATCAAAATGGTTTTTATCTC 539
Query 619 TTGCCATCTCTCTGCTCATGCaaaaaaaGTGGATCAAAGAAATACGGAGTTAAGACACAT 678
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 540 TTGCCATCTCTCTGCTCATGCAAAGAAAGTGGATCAAAGAAATACAGAGTTAAGACACAT 599
Query 679 AGCAAATTCACTATTACCA-AGAGACAAAAGGAAACGTGACCTTACTGTTTGGCTAGGAG 737
|||||||||||||||| || |||||||||| |||||||||||| ||||||||||| ||||
Sbjct 600 AGCAAATTCACTATTA-CATAGAGACAAAAAGAAACGTGACCTCACTGTTTGGCTTGGAG 658
Query 738 ATCTAAATTACAGGATCCAAGATGTCTCTAACCATCCTGTTCGATCTCTTATCCAAAACC 797
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 659 ATCTAAATTACAGGATCCAAGATGCCTCTAACCGTCCTGTTCGATCTCTTATCCAAAACC 718
Query 798 ATCTTCAATCTGTTCTTGTGAGTAAAGATCAACTCTTGCAAGAAGCGGAGAGAGGCGAAA 857
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 719 ATCTTCAATCTGTTCTTGTGAGCAAAGATCAACTCTTGCAAGAAGCGGAGAGAGGCGAAA 778
Query 858 TATTCAAAGGTTACTCTGAAGGAACTTTAGGGTTTAAACCAACCTACAAGTACAATGTAG 917
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 779 TATTCAAAGGTTACTCTGAAGGAACTTTAGGGTTTAAACCGACCTACAAATACAATGTAG 838
Query 918 GAAGCAGCGACTATGATACAAGCCATAAGATCAGGGTTCCAGCTTGGACAGATAGGATCT 977
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 GAAGCAGCGACTATGATACAAGCCATAAGATTAGGGTTCCAGCTTGGACAGATAGGATCT 898
Query 978 TATTCAAGATCCAAGATACTGATAATATTCAAGCAACTCTTCACTCTTATGATTCCATAG 1037
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TATTCAAGATCCAAAATACTGATAATATTCAAGCAACTCTTCACTCTTATGATTCCATAG 958
Query 1038 ACCAAGTATATGGTTCTGATCATAAGCCTGTCAAAGCGGATCTTTGCTTGAAGTGGGTCA 1097
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACCAAGTATATGGTTCCGATCATAAGCCTGTCAAAGCGGATCTTTGCTTGAAGTGGGTCA 1018
Query 1098 ACAGTTAAATAAATGCATACAATTTA 1123
||| ||||||| ||| ||| ||||||
Sbjct 1019 ACAATTAAATAGATGGATAAAATTTA 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5