BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G47530.1 Length=1810 Score E Sequences producing significant alignments: (Bits) Value Ahg473896 jgi|Araly1|473896|fgenesh2_kg.1__3850__AT1G47530.1 2353 0.0 > Ahg473896 jgi|Araly1|473896|fgenesh2_kg.1__3850__AT1G47530.1 Length=1685 Score = 2353 bits (1274), Expect = 0.0 Identities = 1425/1499 (95%), Gaps = 6/1499 (0%) Strand=Plus/Plus Query 8 AAGCAAAGAAGAGAAACTAAAACAGAGCTTTTTTCACATGGGAAAGGATAAGACTTTGCC 67 |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1 AAGCGAAGAAGAGAAACTAAAACAGAGC--TTCTCACATGGGAAAGGATAAGACTTTGCC 58 Query 68 GTTGCTTGACCCTCGTGAGCCACCGGAACTCACCGGAACCAAGTCGGCGTCAAAAGTATG 127 |||||||||||||||||| |||||||||||| |||||||||| |||||||| || ||||| Sbjct 59 GTTGCTTGACCCTCGTGAACCACCGGAACTCTCCGGAACCAAATCGGCGTCGAAGGTATG 118 Query 128 GGCCAAAGAGTTCGGCGAAGAGTCGAAGCGGCTTTGGGAGTTAGCAGGACCAGCGATTTT 187 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 119 GGCCAAAGAGTTCGGCGAAGAGTCGAAGCGGCTTTGGGAGCTAGCGGGACCAGCGATTTT 178 Query 188 CACTGCCATAAGTCAATACTCTCTTGGTGC-TCTCACTCAGACTTTCTCCGGCCGTCTCG 246 ||| ||||||||||||||||||||||| || | | ||||||||||| || || ||||||| Sbjct 179 CACAGCCATAAGTCAATACTCTCTTGGAGCAT-TAACTCAGACTTTTTCTGGTCGTCTCG 237 Query 247 GTGAACTTGAGCTCGCCGCCGTCTCAGTTGAAAACTCTGTTATCTCCGGTCTTGCCTTCG 306 | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 238 GCGAACTTGAGCTCGCCGCCGTCTCTGTTGAGAACTCTGTTATCTCCGGTCTTGCCTTCG 297 Query 307 GTGTCATGTTAGGGATGGGGAGTGCATTGGAGACGTTGTGTGGACAAGCATATGGCGCGG 366 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 298 GTGTTATGTTAGGGATGGGGAGTGCATTGGAGACGTTGTGCGGACAAGCATATGGCGCGG 357 Query 367 GACAGATTAGGATGATGGGAATATATATGCAACGTTCATGGGTCATTCTCTTTACTACTG 426 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 358 GACAGATTAGGATGATGGGAATATATATGCAGCGTTCATGGGTCATTCTCTTTACCACTG 417 Query 427 CTTTGTTTTTGCTTCCCGTCTACATTTGGGCTCCTCCTATTCTTTCCTTCTTCGGCGAGG 486 |||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 418 CTTTGTGTTTGCTCCCCGTTTACATTTGGGCTCCTCCTATTCTTTCCTTCTTCGGCGAGG 477 Query 487 CTCCTCACATCTCTAAAGCCGCGGGGAAGTTCGCATTGTGGATGATCCCGCAACTATTTG 546 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 478 CTCCTCACATCTCTAAAGCCGCGGGGAAATTCGCATTGTGGATGATTCCGCAACTATTTG 537 Query 547 CCTATGCAGCCAACTTCCCGATACAGAAATTCTTGCAGTCACAGAGGAAAGTTCTTGTGA 606 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 538 CCTATGCAGCCAACTTCCCGATACAGAAATTCTTGCAGTCACAGAGGAAAGTGCTTGTGA 597 Query 607 TGGCTTGGATCTCTGGAGTGGTTTTAGTTATACATGCAGTTTTTAGCTGGCTCTTCATTC 666 |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 598 TGGCATGGATCTCTGGAGTGGTTTTAGTTATACACGCAGTGTTTAGCTGGCTCTTCATTC 657 Query 667 TTTACTTTAAGTGGGGACTTGTAGGTGCAGCTATCACTCTCAATACCTCGTGGTGGTTGA 726 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 658 TTTACTTTAAGTGGGGACTTGTAGGTGCAGCCATCACTCTCAATACCTCATGGTGGTTGA 717 Query 727 TTGTTATTGGTCAGCTTTTGTATAT-CTTAATCACCAAATCAGACGGTGCGTGGACTGGA 785 ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 718 TTGTTATCGGTCAGCTTTTGTATATAC-TAATCACCAAATCAGACGGTGCGTGGACTGGA 776 Query 786 TTTTCTATGCTAGCGTTTCGGGACCTCTATGGATTTGTCAAACTTTCCTTAGCCTCTGCT 845 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 777 TTTTCTATGCTGGCGTTTCGGGACCTCTACGGATTTGTCAAACTTTCCTTAGCATCTGCT 836 Query 846 CTTATGCTTTGTTTGGAGTTTTGGTACTTGATGGTTCTGGTTGTTGTTACCGGTCTCCTT 905 || |||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| Sbjct 837 CTCATGCTTTGTTTGGAATTTTGGTACTTGATGATTCTGGTTGTGGTTACCGGTCTCCTT 896 Query 906 CCTAACCCGTTGATACCAGTCGATGCCATCTCCATTTGCATGAATATAGAAGGGTGGACT 965 ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 897 CCTAATCCGTTGATACCAGTCGATGCCATTTCCATTTGCATGAACATAGAAGGGTGGACT 956 Query 966 GCCATGATTTCGATCGGGTTTAACGCTGCGATTAGTGTGAGAGTATCGAATGAGCTGGGT 1025 ||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||| Sbjct 957 GCCATGATTTCAATCGGGTTTAACGCTGCGATAAGTGTGAGGGTATCGAACGAGCTGGGT 1016 Query 1026 GCAGGAAACGCAGCGTTAGCCAAATTCTCAGTGATAGTCGTCTCCATAACTTCAACTCTT 1085 || ||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1017 GCGGGAAATGCAGCTTTAGCAAAATTCTCAGTGATAGTTGTCTCCATAACTTCAACTCTT 1076 Query 1086 ATCGGGATAGTGTGCATGATTGTTGTCTTAGCCACAAAAGACAGCTTCCCTTATCTTTTC 1145 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1077 ATCGGGATTGTGTGCATGATTGTTGTCTTAGCCACAAAAGACAGCTTCCCTTATTTTTTC 1136 Query 1146 ACTTCAAGCGAAGCTGTGGCAGCAGAAACCACGAGAATAGCCGTCTTGTTGGGCTTCACT 1205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 ACTTCAAGCGAAGCTGTGGCAGCAGAAACCACGAGAATAGCCGTCTTGTTGGGCTTCACT 1196 Query 1206 GTCCTCTTGAACAGCCTCCAGCCCGTCTTGTCAGGGGTTGCGGTTGGAGCGGGGTGGCAG 1265 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1197 GTCCTCTTGAACAGCCTCCAGCCCGTCTTGTCAGGGGTTGCTGTTGGAGCTGGGTGGCAG 1256 Query 1266 GCTCTGGTTGCATACGTGAACATTGCGTGTTATTACATTATCGGACTACCTGCTGGTCTT 1325 |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1257 GCTCTGGTCGCATACGTGAACATTGCGTGCTATTACATTATCGGACTTCCTGCTGGTCTT 1316 Query 1326 GTTCTTGGATTCACACTAGACCTCGGCGTTCAGGGAATATGGGGAGGTATGGTAGCTGGA 1385 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1317 GTTCTTGGATTCACACTAGACTTTGGCGTTCAGGGAATATGGGGAGGTATGGTAGCTGGA 1376 Query 1386 ATATGCTTGCAGACACTTATATTGATTGGAATCATCTACTTCACTAACTGGAACAAAGAG 1445 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 ATTTGCTTGCAGACACTTATATTGATTGGAATCATCTACTTCACTAACTGGAACAAAGAG 1436 Query 1446 GCTGAGCAAGCGGAGAGTCGAGTTCAGAGATGGGGAGGAACGGCGCAGGAGTGATCAAC 1504 || |||||||| |||||||| |||||||||||||||||||| |||| |||||||||||| Sbjct 1437 GCCGAGCAAGCCGAGAGTCGGGTTCAGAGATGGGGAGGAACAGCGCGGGAGTGATCAAC 1495 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67952997080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5