BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47710.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923079 jgi|Araly1|923079|scaffold_104360.1 1832 0.0
> Ahg923079 jgi|Araly1|923079|scaffold_104360.1
Length=1221
Score = 1832 bits (992), Expect = 0.0
Identities = 1157/1234 (94%), Gaps = 21/1234 (2%)
Strand=Plus/Plus
Query 39 TCACCACCACAACCTCCGGCGAAAATGGACGTGCGTGAATCAATCTC-ACTGCAAAACCA 97
|||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1 TCACCACCACCACCTCCGGCGAAAATGGACGTGCGTGAATCAATCTCTA-TGCAAAACCA 59
Query 98 AGTCTCCATGAATCTCGCAAAACACGTAATCACCACCGTCTCTC-AAAACTCCAACGTCA 156
|||||| ||||||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct 60 AGTCTCAATGAATCTCGCCAAACACGTAATCACCACCGTCTC-CAAAAACTCCAACGTCG 118
Query 157 TCTTCTCACCGGCTTCAATCAACGTCGTACTCAGTATAATCGCCGCTGGATCCGCCGGCG 216
||||||| ||||| |||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct 119 TCTTCTCTCCGGCGTCAATCAACGTCATCCTCAGTATAATCGCCGCTGGATCCACCGGCG 178
Query 217 CTACCAAA-GATCAGATCCTCTCGTTTCTCAAATTCTCTTCCACTGATCAACTTAATTCA 275
||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 179 CTA-CAAAGGATCAGATCCTCTCGTTCCTCAAATTCTCTTCCACTGATCAGCTTAATTCA 237
Query 276 TTCTCTTCCGAAATCGTCTCCGCTGTTCTCGCTGACGGTAGTGCTAACGGTGGTCCTAAG 335
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTCTCCTCCGATATCGTCTCCGCTGTTCTCGCTGACGGTAGTGCTAACGGTGGTCCTAAG 297
Query 336 CTCTCGGTGGCTAATGGCGCCTGGATCGATAAGTCTCTCTCCTTTAAACCT-TCCTTT-A 393
||||||||||||||||| | ||||||||||||||||||||||||| ||||| | |||| |
Sbjct 298 CTCTCGGTGGCTAATGGTGTCTGGATCGATAAGTCTCTCTCCTTT-AACCTAT-CTTTCA 355
Query 394 A-ACAGC-TCTTGGAAGATTCGTATAAAGCTGCTTCGAATCAAGCTGATTTTCAATCGAA 451
| | | | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AGA-AACTTC-TGGAAGATTCGTATAAAGCTGCTTCGAATCAAGCTGATTTTCAATCGAA 413
Query 452 GGCTGTGGAGGTGATTGCTGAAGTGAATTCATGGGCTGAAAAGGAGACAAATGGTCTCAT 511
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GGCTGTGGAAGTGACTGCTGAAGTGAATTCATGGGCTGAAAAGGAGACAAATGGTCTCAT 473
Query 512 CACTGAGGTTCTTCCAGAAGGATCAGCTGATAGTATGACCAAACTGATATTTGCAAATGC 571
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 474 CACTGAGGTTCTTCCAGAAGGAGCAGCTGATAGTATGACCAAACTGATATTTGCAAATGC 533
Query 572 ATTGTACTTCAAGGGAACATGGAACGAGAAATTCGATGAGTCGTTAAC-ACAAGAAGGCG 630
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct 534 ATTGTACTTCAAGGGAACATGGAACGAGAAATTCGATGAGTCGTTAACGA-AAGAAGACG 592
Query 631 AGTTTCACCTTCTTGACGGTAACAAAGTGACTGCACCATTCATGACCAGCAAGAAGAAAC 690
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACTTTCACCTTCTTGACGGTAACAAAGTGACTGCACCATTCATGACCAGCAAGAAGAAAC 652
Query 691 AATACGTAAGTGCTTACGATGGTTTCAAAGTTTTGGGACTTCCTTACTTACAAGGACAGG 750
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 653 AATACGTAAGTGCTTACGATGGATTCAAAGTTTTAGGACTTCCATACTTACAAGGACAGG 712
Query 751 ATAAGCGACAATTCTCCATGTACTTTTATCTTCCCGATGCAAACAACGGACTGTCTGATC 810
|||| |||||||||||||||||| |||||||||| |||||||||| |||| |||||||||
Sbjct 713 ATAAACGACAATTCTCCATGTACATTTATCTTCCTGATGCAAACACCGGATTGTCTGATC 772
Query 811 TTCTGGACAAAATAGTTTCCACTCCTGGGTTCTTAGACAACCACATCCCACGCAGACAAG 870
| ||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||
Sbjct 773 TGCTGGAGAAAATAGTTTCTACTCCTGGGTTCTTAGACAGCCACATTCCACGCAGACAAG 832
Query 871 TTAAAGTCCGCGAATTCAAGATTCCAAAGTTTAAATTCTCTTTCGGGTTCGATGCTTCAA 930
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 833 TTAAAGTCGGCGAATTCAAGATTCCAAAGTTTAAATTCTCTTTCGGGTTCGACGCTTCAG 892
Query 931 ATGTTTTAAAAGGATTGGGACTGACTTCGCCTTTCAGCGGTGAAGAAGGTTTAACTGAGA 990
|||||||||||||||| ||||| ||||| || ||||| |||||||| ||| |||||||||
Sbjct 893 ATGTTTTAAAAGGATTAGGACTTACTTCACCATTCAGTGGTGAAGACGGTCTAACTGAGA 952
Query 991 TGGTTGAATCTCCTGAGATGGGGAAGAATCTATGCGTATCGAACATTTTCCATAAAGCGT 1050
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 953 TGGTTGAATCTCCAGAAATGGGGAAGAATCTATGCGTATCAAACATTTTCCATAAAGCGT 1012
Query 1051 GTATCGAAGTGAATGAAGAAGGAACAGAAGCTGCAGCTGCATCAGCTGGAGTTATAAAGC 1110
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1013 GTATCGAAGTGAACGAAGAAGGAACAGAAGCTGCAGCTGCATCAGCTGGAGTTATAAAAC 1072
Query 1111 TAAGAGGATTGCTTATGGAGGAAGATGAAATAGATTTTGTTGCAGACCATCCGTTTCTAT 1170
||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1073 TAAGAGGATTGGTTATGGAGGAAGAGGAGATAGATTTTGTTGCAGACCATCCGTTTCTAT 1132
Query 1171 TGGTGGTCACAGAGAACATAACAGGAGTGGTTCTGTTCATTGGCCAAGTTGTTGATCCGT 1230
||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1133 TGGTGATCACAGAAAACATAACAGGAGTGATTCTGTTCATTGGCCAAGTTGTTGATCCGT 1192
Query 1231 TGCATTAATCTAAAGCTAATGTGGAAGTTTTTGG 1264
|||||||| || |||||||||||| ||||||
Sbjct 1193 TGCATTAA---AA--CTAATGTGGAAGCTTTTGG 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5