BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G47960.1 Length=1528 Score E Sequences producing significant alignments: (Bits) Value Ahg923116 jgi|Araly1|923116|scaffold_104397.1 736 0.0 Ahg473927 jgi|Araly1|473927|fgenesh2_kg.1__3881__AT1G47915.1 252 7e-66 Ahg473930 jgi|Araly1|473930|fgenesh2_kg.1__3884__AT1G47915.1 246 3e-64 Ahg336955 jgi|Araly1|336955|fgenesh1_pg.C_scaffold_1003520 195 1e-48 Ahg933044 jgi|Araly1|933044|scaffold_401032.1 187 2e-46 > Ahg923116 jgi|Araly1|923116|scaffold_104397.1 Length=499 Score = 736 bits (398), Expect = 0.0 Identities = 433/450 (96%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 148 tgatgatgatggtgatggtgatggtgagtgaAGGAAGTATAATAGAGCCA-ACATGTAAA 206 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 13 TGATGATGATGGTGATGGTGATGGTGAGTGAAGGAAGTATAATAGAG-CAGACATGTAAA 71 Query 207 GAGACACCAGACTTCAATCTTTGTGTGTCTCTCCTTAACTCCGATCCACGTGGTTCCTCT 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 GAGACACCAGACTTCAATCTTTGTGTGTCTCTCCTTAACTCCGATCCACGTGGTTCCTCT 131 Query 267 GCCGACACTTCTGGCCTCGCTCTCATCCTCATTGATAAAATCAAGGGCCTGGCAACAAAA 326 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 132 GCCGACACTTCTGGCCTCGCTCTCATCCTCATTGATAAAATCAAGGGACTGACAACAAAA 191 Query 327 ACTTTGAACGAGATCAACGGTCTATATAAGAAGAGACCAGAACTAAAACGGGCTTTGGAT 386 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 ACCTTGAACGAGATCAACGGTCTATATAAGAAGAGACCAGAACTAAAACGGGCTTTGGAC 251 Query 387 GAATGTAGTCGAAGATACAAAACGATCTTAAACGCTGATGTTCCCGAAGCCATTGAAGCT 446 ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 252 GAATGTAGTCGGAGATACAAAACGATCTTATACGCTGATGTTCCCGAAGCCATTGAAGCT 311 Query 447 ATCTCTAAAGGAGTCCCCAAATTCGGCGAAGACGGTGTGATCGACGCCGGTGTCGAAGCT 506 || ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 312 ATTTCTAAAGGAGTTCCGAAATTCGGCGAAGATGGTGTGATCGACGCCGGTGTCGAAGCT 371 Query 507 TCTGTTTGTCAAGGAGGGTTTAATGGGAGTTCTCCGTTGACTAGTTTGACTAAATCAATG 566 ||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||||||| Sbjct 372 TCTGTTTGTGAAGGAGGGTTTAAAGGGAAATCTCCGTTGACTAGTTTGACCAAATCAATG 431 Query 567 CAAAAAATCTCTAATGTGACTAGAGCCATT 596 |||||||||||||||||||||||||||||| Sbjct 432 CAAAAAATCTCTAATGTGACTAGAGCCATT 461 > Ahg473927 jgi|Araly1|473927|fgenesh2_kg.1__3881__AT1G47915.1 Length=192 Score = 252 bits (136), Expect = 7e-66 Identities = 173/191 (91%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 741 ATGAGAAGTGCTCCTCGGGATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATC 800 ||||||||| || || | ||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1 ATGAGAAGTTCTGCTAGAGATTCGATAAGCAATTTGCCAGATGAGATTCTTGGCAAAATC 60 Query 801 CTGTCTTTGATTCCGAC--AAGTGGCTGCTTCGACATCGGTTCTGTCCAAGAGGTGGAAG 858 |||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||| | Sbjct 61 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGATTCTGTCCAAGAGGTGGAGG 120 Query 859 AATCTGCTATGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTTTATCCCAAC 918 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 121 AATCTGCTGGGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTGTATCCCAAT 180 Query 919 GATGAAGAAGC 929 || |||||||| Sbjct 181 GAAGAAGAAGC 191 > Ahg473930 jgi|Araly1|473930|fgenesh2_kg.1__3884__AT1G47915.1 Length=191 Score = 246 bits (133), Expect = 3e-64 Identities = 172/191 (90%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 741 ATGAGAAGTGCTCCTCGGGATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATC 800 ||||||||| || || | |||||||| |||| |||||||||||||||||||||||||||| Sbjct 1 ATGAGAAGTTCTGCTAGAGATTCGATCAGCAATTTGCCAGATGAGATACTTGGCAAAATC 60 Query 801 CTGTCTTTGATTCCGACAA--GTGGCTGCTTCGACATCGGTTCTGTCCAAGAGGTGGAAG 858 |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| | Sbjct 61 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCGACATCTGTTCTGTCCAAGAGGTGGAGG 120 Query 859 AATCTGCTATGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTTTATCCCAAC 918 |||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||| Sbjct 121 AATCTGCTGGGTCTTGTAGACACCCTTTCCTTTGATGAGTCGATGGTTGTGTATCCCAAC 180 Query 919 GATGAAGAAGC 929 || |||||||| Sbjct 181 GAAGAAGAAGC 191 > Ahg336955 jgi|Araly1|336955|fgenesh1_pg.C_scaffold_1003520 Length=546 Score = 195 bits (105), Expect = 1e-48 Identities = 173/205 (84%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 1097 TGGAACGCGGTTTACTGGAACTACACTTGCACGCCAACCCCCG-CTCTAGTGTTAATATA 1155 ||||||| |||||| |||||||||||||||||| | | | | ||| | || ||||| Sbjct 2 TGGAACGTGGTTTATTGGAACTACACTTGCACG-C-A-TATAGACACTA-TTTTGATATA 57 Query 1156 GAGACAGAGTTGTTAACTAGCAAGACACTGGTTAAGCTCACACTATCAGG-CGCATATTC 1214 |||||||||||||| || ||||||||||||||||||||||||||||| || | |||| | Sbjct 58 GAGACAGAGTTGTTGACGAGCAAGACACTGGTTAAGCTCACACTATCCGGTCT-ATATGC 116 Query 1215 TCTTGAAGTCGAGCGTATGTTTTTCCCTGAGCTCAAATCACTTTCTCTATTATCAGTTTC 1274 | |||||||| || | |||||||||||| ||||||||||||||||||||||||||||| Sbjct 117 TATTGAAGTCAAGTATGTGTTTTTCCCTGCGCTCAAATCACTTTCTCTATTATCAGTTTT 176 Query 1275 AGGGCTTGATCATCCCAAATATTGT 1299 |||||||||| || ||| |||||| Sbjct 177 AGGGCTTGATTATGACAACTATTGT 201 > Ahg933044 jgi|Araly1|933044|scaffold_401032.1 Length=443 Score = 187 bits (101), Expect = 2e-46 Identities = 215/268 (80%), Gaps = 16/268 (6%) Strand=Plus/Plus Query 760 ATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATCCTGTCTTTGA-TTCCGAC- 817 ||| ||| |||| ||||||| ||||||| ||| |||||| ||||| || | || |||| Sbjct 41 ATTTGATCAGCAATTTGCCAAATGAGATTCTTACCAAAATTCTGTC-TTCACTTGCGACA 99 Query 818 -AAGTGGCTGCTTCGACATC-GGTTCTGTCCAAGAGGTGGAAGAATCTGCTATGTCTTGT 875 |||||| ||| || ||| | | ||||||||||||||||||||||||||||| ||||||| Sbjct 100 AAAGTGGTTGCCTCCACA-CAGATTCTGTCCAAGAGGTGGAAGAATCTGCTAGGTCTTGT 158 Query 876 AGACAACCTTTG-TTTTGATGAGTCGATGGTTGTTTATCCCAACGATGAAGAAGCAAGAC 934 ||||| |||||| |||| |||| || |||||||| ||||| ||| || ||||| ||| | Sbjct 159 AGACACCCTTTGGTTTT-ATGATTCCATGGTTGTGTATCCAAAC-ATAAAGAA-CAAAAA 215 Query 935 -GC-GGTTCACATCGCTTCCT-TGAGTTCGTAGACAAGACACTTGCTTTG-CTAAGCAAT 990 | |||| | | ||| || | ||| |||||||| |||||| ||||| || | ||||||| Sbjct 216 AGGTGGTTTAGACCGCCTC-TGTGATTTCGTAGAGAAGACATTTGCTCTGTC-AAGCAAT 273 Query 991 TCTCACATGAAGAAGTTCTCTCTGTCTC 1018 |||| ||| ||||| || |||||| ||| Sbjct 274 TCTCCCATCAAGAAATTATCTCTGCCTC 301 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57211547990 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5