BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G47970.1 Length=924 Score E Sequences producing significant alignments: (Bits) Value Ahg473932 jgi|Araly1|473932|fgenesh2_kg.1__3886__AT1G47970.1 1182 0.0 > Ahg473932 jgi|Araly1|473932|fgenesh2_kg.1__3886__AT1G47970.1 Length=783 Score = 1182 bits (640), Expect = 0.0 Identities = 762/815 (93%), Gaps = 32/815 (4%) Strand=Plus/Plus Query 1 CTCTAAAAATTCTCCAGGAAAATCGAAAACTTTTCTCGGGAAAATCTTTAAACTTTTTGC 60 |||||||||||||||||||||||||||||| |||||||||||||||||| || | Sbjct 1 CTCTAAAAATTCTCCAGGAAAATCGAAAAC-TTTCTCGGGAAAATCTTT--AC-----AC 52 Query 61 TTTTCGAAGAAACATGACTGGTGTTAATGATGATGATGATAAGAACTTCAAAGAAGAACC 120 |||| |||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 53 TTTT---------ATGACTGGCG-T--TGATGATGATGATAAGAACTTCAAAGAAGAACC 100 Query 121 AGAGATTCAAGTTTTAAGCGACGACGATAGTGATGAAGAACAAGTTAAAGACGTAGGTGA 180 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101 TGAGATTCAAGTTCTAAGCGACGACGATAGTGATGAAGAACAAGTTAAAGACGTAGGTGA 160 Query 181 AGAAGTTAGCGACgaagacgatgatgatggaagtgaaggagatgatgatgatgatgagga 240 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 161 AGAAGTTAGCGACGAAGATGATGATGATGGAAGTGAAGGAGATGATGATGATGATGAGG- 219 Query 241 agaagaagaagatgacgatgacgatgatgatgTTCAGGTTTTGCAGTCTTTAGGTGGTCC 300 || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 220 AG--GAAGAAGAAGACGATGATGATGATGATGTTCAGGTTTTGCAGTCTTTAGGTGGTCC 277 Query 301 TCCTGTACAATCAGCGgaagatgaagatgaagaaggtgatgaagatgggaacggtgatga 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 278 TCCTGTACAATCAGCGGAAGATGAAGATGAAGAAGGTGATGAAGATGGAAACGGTGATGA 337 Query 361 cgatgatgatgatggagatgatgatgatgacgacgatgatgatgaggatgaggatgttga 420 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| Sbjct 338 CGATGATGATGATGGAGATGATGATGATGACGACGATGATGATGATGATGAAGATGCTGA 397 Query 421 agatgagggggatCTTGGGACAGAGTACTTAGTGAGGCCAGTTGGTAGAGCTGAAGATGA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 398 AGATGAGGGGGATCTTGGGACAGAGTACTTAGTGAGGCCAGTTGGTAGAGCTGAGGATGA 457 Query 481 GGAGGATGCAAGTGATTTTGAGCCGGAAGAGAATGGTGTGGAAGAGGATATAGACGAAGG 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 458 GGAGGATGCAAGTGATTTTGAGCCGGAAGAGAATGGTGTGGAAGAGGATATTGATGAAGG 517 Query 541 AGAAGACGATGAGAATGATAACTCGGGTGGTGCTGGGAAGTCAGAGGCTCCGCCGAAGAG 600 ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| | Sbjct 518 AGAAGACGATGAGAACGATAACTCGGGTGGTGCTGGGAAATCAGAGGCTCCACCGAAGCG 577 Query 601 GAAGAGAGCTCCTGAAGAAGATGAAGAGGATAGTGGTGATGAAGATGATGACAGACCTCC 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 578 GAAGAGAGCTCCTGAAGAAGATGAAGAGGATAGTGGTGATGAAGATGATGACAGACCTCC 637 Query 661 AAAGAGGTAGTTTTTGGATCTGACAACAACACAATGAGACCAGAGAGCTTTTTATGtttt 720 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 638 AAAGAGGTAGTTTTCGGATCTGACAACAACACAATGAGACCAGAGAGCTTTT-ATGTTTT 696 Query 721 tttttCTaaaaaaaaTTTGGTGTTGTGAGATTTGAATCATTGGTTGGGGTTTATGTAAGT 780 ||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 697 TTT----AAAAA---TTTGGTGTTGTGAGATTTGAATCATTGGTTGGGGTTCATGTAAGT 749 Query 781 TTATTATGGAGCAACTAAGTAGTAGTTTTAAGTTT 815 |||||||| |||||| ||||||||||||||||||| Sbjct 750 TTATTATGCAGCAAC-AAGTAGTAGTTTTAAGTTT 783 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34272502383 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5