BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48030.1
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473938 jgi|Araly1|473938|fgenesh2_kg.1__3892__AT1G48030.2 2603 0.0
Ahg929571 jgi|Araly1|929571|scaffold_302028.1 1430 0.0
> Ahg473938 jgi|Araly1|473938|fgenesh2_kg.1__3892__AT1G48030.2
Length=1709
Score = 2603 bits (1409), Expect = 0.0
Identities = 1615/1715 (94%), Gaps = 12/1715 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATGGCGAGTTTAGCTAGGAGGAAGGCGTATTTTCTCACCAGAAACTTATCAAAC 60
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGGCGATGGCGAGCTTAGCTAGGAGGAAGGCGTACTTTCTCACCAGAAACTTATCCAAC 60
Query 61 TCTCCCACTGACGCTCTCAGATTCTCCTTTTCCCTCTCCCGTGGCTTCGCCTCATCAGGA 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TCTCCCACTGACGCTCTCAGATTCTCCTTCTCCCTCTCCCGTGGCTTCGCCTCATCAGGA 120
Query 121 TCTGATGAAAACGACGTCGTCATCATCGGCGGCGGTCCCGGTGGTTACGTAGCCGCGATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGATGAAAACGACGTCGTCATCATCGGCGGCGGTCCCGGTGGTTACGTAGCCGCGATC 180
Query 181 AAAGCCTCTCAGCTTGGTCTCAAAACCACTTGTATCGAGAAACGCGGCGCTCTCGGTGGT 240
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AAAGCGGCTCAGCTTGGTCTCAAAACCACCTGTATCGAGAAACGCGGCGCTCTCGGTGGT 240
Query 241 ACTTGTCTCAACGTCGGTTGCATTCCTTCCAAGGCTCTGCTTCACTCTTCACATATGTAC 300
|||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 241 ACTTGTCTTAACGTCGGGTGCATTCCTTCGAAGGCTCTTCTTCACTCTTCACATATGTAC 300
Query 301 CATGAGGCGAAGCATTCCTTCGCTAACCATGGTATTAAGGTCTCTTCTGTTGAGGTAGAT 360
||||||||||| ||| | ||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 301 CATGAGGCGAAACATGCGTTCGCCAACCATGGTATTAAGGTCTCTTCGGTTGAGGTGGAT 360
Query 361 CTTCCTGCTATGTTGGCTCAGAAAGATAATGCGGTTAAGAACCTCACTCGTGGTATTGAG 420
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 361 CTTCCTGCTATGTTAGCTCAGAAAGATAATGCGGTTAAGAACCTTACTCGTGGTATCGAA 420
Query 421 GGTTTGTTCAAGAAAAATAAGGTGACTTATGTCAAAGGATATGGTAAGTTTATTTCCCCA 480
|||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 421 GGTTTGTTCAAGAAGAATAAGGTGACTTATGTTAAGGGATATGGTAAGTTTATTTCACCA 480
Query 481 AATGAAGTCTCGGTGGAGACTATTGATGGAGGAAACACTATTGTGAAAGGTAAACATATC 540
|||||||||||||||||||| || |||||||| ||||| |||||||||||||||| |||
Sbjct 481 AATGAAGTCTCGGTGGAGACGATCGATGGAGGGAACACCGTTGTGAAAGGTAAACACATC 540
Query 541 ATTGTTGCTACTGGCTCGGATGTTAAGTCCTTGCCTGGTATTACGATTGATGAAAAGAAG 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 ATTGTTGCTACTGGCTCGGATGTTAAGTCTTTGCCTGGTATTACGATTGATGAAAAGAAG 600
Query 601 ATTGTTTCGTCGACTGGAGCGTTGTCTCTATCGGAAGTTCCGAAGAAATTGATTGTTATT 660
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 601 ATTGTTTCGTCGACTGGAGCGTTGTCTCTGTCGGAAGTCCCGAAGAAATTGATTGTGATT 660
Query 661 GGTGCGGGGTATATTGGGCTTGAGATGGGTTCTGTTTGGGGTAGGCTTGGATCTGAGGTT 720
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 661 GGTGCGGGGTATATTGGGCTTGAGATGGGTTCTGTTTGGGGTAGGCTTGGGGCAGAGGTT 720
Query 721 ACGGTTGTTGAGTTTGCTGGAGATATTGTTCCTTCGATGGATGGTGAAATTCGTAAGCAG 780
||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 721 ACGGTAGTTGAGTTTGCTGGGGATATCGTTCCTTCGATGGATGGTGAAATCCGTAAGCAG 780
Query 781 TTTCAACGTTCTCTTGAGAAGCAGAAGATGAAGTTCATGCTCAAGACTAAAGTTGTTTCT 840
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 781 TTTCAACGTTCACTTGAGAAGCAAAAGATGAAGTTCATGCTCAAGACTAAAGTTGTATCT 840
Query 841 GTGGATTCCTCCTCTGATGGTGTGAAGCTTACAGTGGAACCGGCAGAAGGAGGAGAGCAG 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTGGATTCCTCCTCTGACGGTGTGAAGCTTACAGTGGAACCGGCAGAAGGAGGAGAGCAG 900
Query 901 TCTATTCTGGAAGCTGATGTGGTACTTGTCTCAGCGGGAAGAACACCGTTCACTTCTGGA 960
||||||||||||| ||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct 901 ACTATTCTGGAAGCCGATGTTGTGCTTGTCTCAGCAGGAAGAACACCGTTCACATCTGGA 960
Query 961 CTTGATCTGGAGAAAATCGGAGTGGAAACTGACAAAGCCGGGAGGATTCTGGTGAATGAT 1020
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 961 CTTGATCTGGAGAAAATCGGAGTAGAAACTGACAAAGCTGGGAGGATTCTGGTGAATGAG 1020
Query 1021 AGATTCTTGAGTAATGTCCCAGGCGTGTATGCTATTGGAGATGTGATTCCAGGACCAATG 1080
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGATTCTTGAGCAATGTCCCAGGCGTGTATGCTATTGGAGATGTGATTCCAGGACCAATG 1080
Query 1081 CTTGCTCACAAAGCCGAAGAAGACGGTGTTGCTTGTGTGGAGTTCATAGCAGGCAAACAC 1140
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTTGCTCACAAAGCCGAAGAAGATGGTGTTGCTTGTGTGGAGTTCATAGCAGGCAAACAC 1140
Query 1141 GGTCATGTTGATTATGACAAGGTTCCTGGTGTTGTTTACACTCATCCTGAGGTTGCTTCG 1200
|| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1141 GGCCATGTGGATTATGACAAGGTTCCTGGTGTTGTCTACACGCATCCTGAGGTTGCTTCG 1200
Query 1201 GTTGGTAAAACCGAAGAACAGCTGAAGAAAGAAGGTGTGAGTTACCGGGTTGGGAAATTC 1260
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1201 GTTGGTAAAACCGAAGAACAGCTGAAGAAAGAAGGTGTGAGTTACCGGGCTGGAAAATTC 1260
Query 1261 CCGTTTATGGCGAATAGCAGAGCTAAGGCTATTGATAATGCAGAAGGATTGGTTAAGATT 1320
|| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1261 CCATTTATGGCAAATAGCAGAGCGAAGGCCATTGATAATGCAGAAGGATTGGTTAAGATT 1320
Query 1321 CTGGCCGATAAGGAGACTGATAAGATCTTGGGCGTTCACATTATGGCGCCAAACGCTGGA 1380
||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1321 CTGGCTGATAAGGAGACCGATAAGATCTTGGGCGTTCACATTATGTCTCCAAACGCTGGA 1380
Query 1381 GAGCTGATTCATGAGGCTGTTCTTGCGATTAACTACGATGCATCAAGTGAAGACATTGCT 1440
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GAGCTGATTCATGAGGCGGTTCTTGCGATTAACTACGATGCATCAAGTGAAGACATTGCT 1440
Query 1441 CGAGTCTGCCATGCTCATCCCACTATGAGCGAGGCTCTTAAGGAAGCTGCCATGGCCACC 1500
|||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1441 CGAGTCTGTCACGCTCATCCCACTATGAGCGAGGCTCTGAAGGAAGCCGCCATGGCCACA 1500
Query 1501 TATGACAAGCCTATTCACATCTAAAAGGGAACAAGGAAGACCTTAAAGGAGTGAGCCACC 1560
||||||||||| ||||||||||||| ||||| | ||||||||||||||| ||||||||
Sbjct 1501 TATGACAAGCCCATTCACATCTAAA-GGGAA---G-AAGACCTTAAAGGAGAGAGCCACC 1555
Query 1561 TATGACAAGCCAAATCGATATCTTAACCTGGTTGGATTTTGGTTCGGTTTTCTGTGGTTT 1620
|| ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 1556 TACGACAAGCCAAATCGATATCTTAAACGGGTTGGATTTTGGTTTGGTTTTCTGTGGTTT 1615
Query 1621 AGCCTTCAATTTGTCCTTTAT-ACT-GT-GTTTTTATTCGTTAATGTTCAGATACGTGTT 1677
||||||||||||||||||||| ||| || || || ||| | | ||||||||| ||||||
Sbjct 1616 AGCCTTCAATTTGTCCTTTATTACTAGTAGTGTTC-TTCAT-A-TGTTCAGATTCGTGTT 1672
Query 1678 AAGCCTGATCTTTAATAAAATATTCAACATTCACT 1712
|||||||||| |||||||| |||||||||||||||
Sbjct 1673 AAGCCTGATCCTTAATAAA-TATTCAACATTCACT 1706
> Ahg929571 jgi|Araly1|929571|scaffold_302028.1
Length=1604
Score = 1430 bits (774), Expect = 0.0
Identities = 1293/1544 (84%), Gaps = 34/1544 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATGGCGAGTTTAGCTAGGAGGAAGGCGTATTTTCTCACCAGAAACTTATCAAAC 60
|||||||||||||| ||||||||||| || ||||| ||||||||||||||| | || ||
Sbjct 26 ATGGCGATGGCGAGCTTAGCTAGGAGAAAAGCGTACTTTCTCACCAGAAACATCTCCAAT 85
Query 61 TCTCCCACTGACGCTCTCAGATTCTCCT-TTTCCCTCTCCCGTGGCTTCGCCTCATCAGG 119
||||||||||||||||||||||||| || | |||||| | || |||||||| || || ||
Sbjct 86 TCTCCCACTGACGCTCTCAGATTCT-CTCTCTCCCTCACTCGCGGCTTCGCTTCGTCGGG 144
Query 120 ATCTGATGAAAACGACGTCGTCATCATCGGCGGCGGTCCCGGTGGTTACGTAGCCGCGAT 179
||| || || ||||||||||||||||||||||||||||| || || || || || |||||
Sbjct 145 ATCCGACGACAACGACGTCGTCATCATCGGCGGCGGTCCTGGAGGATATGTGGCGGCGAT 204
Query 180 CAAAGCCTCTCAGCTTGGTCTCAAAACCACTTGTATCGAGAAA-CGCGGCGCTCTCGGTG 238
|| || | ||||| |||||||| || || |||||||| ||| ||||||||||||||||
Sbjct 205 TAAGGCGGCACAGCTCGGTCTCAAGACAACCTGTATCGA-AAAGCGCGGCGCTCTCGGTG 263
Query 239 GTACTTGTCTCAACGTCGGTTGCATTCCTTCCAAGGCTCTGCTTCACTCTTCACATATGT 298
|||||||||| |||||||| || |||||||| ||||| || ||||||||||| || ||||
Sbjct 264 GTACTTGTCTTAACGTCGGCTGTATTCCTTCAAAGGCCCTTCTTCACTCTTCTCACATGT 323
Query 299 ACCATGAGGCGAAGCA--TTCCTTCGCTAACCATGGTATTAAGGTCTCTTCTGTTGAGGT 356
||||||| || ||||| || || |||||||||||| ||||||| ||||| ||||||||
Sbjct 324 ACCATGAAGCAAAGCACGTT--TTTGCTAACCATGGTGTTAAGGTTTCTTCAGTTGAGGT 381
Query 357 AGATCTTCCTGCTATGTTGGCTCAGAAAGATA-ATGCGGTTAAGAACCTCACTCGTGGTA 415
|||||||||||||||||||||||||||||| | | || || ||||| ||||| ||||||
Sbjct 382 AGATCTTCCTGCTATGTTGGCTCAGAAAGACACA-GCCGTCAAGAATCTCACCCGTGGTG 440
Query 416 TTGAGGGT-TTGTTCAAGAAAAATAAGGTGA-CTTATGTCAAAGGATATGGTAAGTTTAT 473
| || ||| || |||||||| || ||||| | || |||| || || || ||||||||| |
Sbjct 441 TCGAAGGTCTT-TTCAAGAAGAACAAGGTAAACT-ATGTTAAGGGCTACGGTAAGTTTCT 498
Query 474 TTCCCCAA-ATGAAGTCTCGGTGGAGACTATTGATGGAGGAAACACTA--TTGTGAAAGG 530
|||||| | |||||||| ||||| || || ||||||| ||| ||| |||| |||||
Sbjct 499 GTCCCCATCA-GAAGTCTCTGTGGACACAATCGATGGAG-AAA-ACTTGGTTGTCAAAGG 555
Query 531 TAAACATATCATTGTTGCTACTGGCTCGGATGTTAAGTCCTTGCCTGGTATTACGATTGA 590
||||||||||| ||||| |||||||||||||| ||||| ||||| || || || || ||
Sbjct 556 CAAACATATCATAGTTGCAACTGGCTCGGATGTCAAGTCTTTGCCAGGCATCACCATCGA 615
Query 591 TGAAAAGAAGATTGTTTCGTCGACTGGAGCGTTGTCTCT-ATCGGAAGTTCCGAAGAAAT 649
||||||||||||||| || || ||||| || ||||||| | | ||| | || ||||||
Sbjct 616 TGAAAAGAAGATTGTCTCATCAACTGGGGCACTGTCTCTGA-CAGAAATCCCAAAGAAAC 674
Query 650 TGATTGTTATTGGTGCGGGGTATATTGGGCTTGAGATGGGTTCTGTTTGGGGTA-GGCTT 708
| ||||| |||||||| || ||||||||||| |||||||||||||| ||||| | ||||
Sbjct 675 TCATTGTCATTGGTGCTGGCTATATTGGGCTCGAGATGGGTTCTGTATGGGG-ACGGCTC 733
Query 709 GGATCTGAGGTTACGGTTGTTGAGTTTGCTG-GAGATATTGTTCCTTCGATGGATGGTGA 767
||||| ||||| || |||||||||||||| | | ||||| || || | |||||||||||
Sbjct 734 GGATCAGAGGTCACAGTTGTTGAGTTTGCAGCG-GATATCGTACCAGCAATGGATGGTGA 792
Query 768 AATTCGTAAGCAGTTTCAACGTTCTCTTGAGAAGCAGAAGATGAAGTTCATGCTCAAGAC 827
||| || ||||||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct 793 AATCCGCAAGCAGTTTCAACGTTCACTAGAGAAGCAAAAGATGAAATTCATGCTCAAGAC 852
Query 828 TAAAGTTGTTT-CTGTGGATTCCTCCTCT-GATGGTGTGAAGCTTACAGTGGAACCGGCA 885
|||||| || | || ||||| || | ||||||||||| || | ||||||||| ||
Sbjct 853 TAAAGTCGTCGGC-GTAGATTCATC-TGGAGATGGTGTGAAACTCATAGTGGAACCTGCT 910
Query 886 GAAGGAGGAGAGCAGTCTATTCTGGAAGCTGATGTGGTACTTGTCTCAGCGGGAAGAACA 945
||||| ||||||||| | | ||| |||||||||||||| || |||||||| || |||||
Sbjct 911 GAAGGTGGAGAGCAGACCACTCTAGAAGCTGATGTGGTCCTCGTCTCAGCTGGTAGAACT 970
Query 946 CCGTTCACTTCTGGACTTGATCTGGAGAAAATCGGAGTGGAAACTGACAAAGCCGGGAGG 1005
|||||||| |||||||||||||| |||||||||||||| || || ||||||| ||||||
Sbjct 971 CCGTTCACATCTGGACTTGATCTAGAGAAAATCGGAGTTGAGACAGACAAAGGCGGGAGA 1030
Query 1006 ATTCTGGTGAATGATAGATTCTTGAGTAATGTCCCAGGCGTGTATGCTATTGGAGATGTG 1065
||||||||||| || ||||||| || ||||| ||||||| ||||| ||||||||||||
Sbjct 1031 ATTCTGGTGAACGAGAGATTCTCGACAAATGTTTCAGGCGTTTATGCAATTGGAGATGTG 1090
Query 1066 ATTCCAGGACCAATGCTTGCTCACAAAGCCGAAGAAGACGGTGTTGCTTGTGTGGAGTTC 1125
||||||||||||||||| |||||||||||||||||||| ||||| || ||||| |||||
Sbjct 1091 ATTCCAGGACCAATGCTGGCTCACAAAGCCGAAGAAGATGGTGTCGCATGTGTTGAGTTT 1150
Query 1126 ATAGCAGGCAAACACGGTCATGTTGATTATGACAAGGTTCCTGGTGTTGTTTACAC-TCA 1184
||||||||||||||||||||||| ||||| ||||| || ||||| ||||| ||||| | |
Sbjct 1151 ATAGCAGGCAAACACGGTCATGTGGATTACGACAAAGTCCCTGGGGTTGTCTACACGT-A 1209
Query 1185 TCCTGAGGTTGCTTCGGTTGGTAAAACCGAAGAACAGCTGAAGAAAGAAGGTGTGAGTTA 1244
||||| ||||| || |||||||||||||| || |||||||||||||| ||||| || ||
Sbjct 1210 CCCTGAAGTTGCCTCAGTTGGTAAAACCGAGGAGCAGCTGAAGAAAGACGGTGTAAGCTA 1269
Query 1245 CCGGGTTGGGAAATTCCCGTTTATGGCGAATAGCAGAGCTAAGGCTATTGATA-ATGCAG 1303
| || || |||||||| || ||||| ||||||||||| ||||| || || | | | ||
Sbjct 1270 CAATGTCGGAAAATTCCCATTCATGGCCAATAGCAGAGCCAAGGCCATAGACACA-GTAG 1328
Query 1304 AAGGATTGGTTAAGATTCTGGCCGATAAGGAGACTGATAAGATCTTGGGCGTTCACATTA 1363
| ||| |||| |||||| |||| ||||| ||||| || ||||||||||| ||||||||||
Sbjct 1329 AGGGACTGGTCAAGATTTTGGCTGATAAAGAGACAGACAAGATCTTGGGAGTTCACATTA 1388
Query 1364 TGGCGCCAAACGCTGGAGAGCTGATTCATGAGGCTGTTCTTGCGATTAACTACGATGCAT 1423
|| | |||||||| ||||| |||| |||||||| ||||| || || ||||| |||||||
Sbjct 1389 TGTCACCAAACGCAGGAGAATTGATCCATGAGGCGGTTCTAGCTATCAACTATGATGCAT 1448
Query 1424 CAAGTGAAGACATTGCTCGAGTCTGCCATGCTCATCCCACTATGAGCGAGGCTCTTAAGG 1483
|||| |||||||||||||||||||| || ||||||||||| ||||| |||||| | ||||
Sbjct 1449 CAAGCGAAGACATTGCTCGAGTCTGTCACGCTCATCCCACCATGAGTGAGGCTATCAAGG 1508
Query 1484 AAGCTGCCATGGCCACCTATGACAAGCCTATTCACATCTAAAAG 1527
||||||||||||| |||||||||||||| |||||||| || |||
Sbjct 1509 AAGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAG 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64410604295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5