BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48100.1
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923134 jgi|Araly1|923134|scaffold_104415.1 2296 0.0
> Ahg923134 jgi|Araly1|923134|scaffold_104415.1
Length=1468
Score = 2296 bits (1243), Expect = 0.0
Identities = 1398/1473 (95%), Gaps = 9/1473 (1%)
Strand=Plus/Plus
Query 26 tctctcttctcAAAGCTAAACAATGCGCAGACTCAGTGGCATTCTCGTGATTTACATAAT 85
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTTCTCAAAGCTAAACAATGCGCAGTCTCAGTGGCATTCTCGTGATTTACATAAT 60
Query 86 CTCCACTGTCCTCTTTGGACATTTCACCAACGTGGCACGAGCAAGATATCATTACCACAA 145
||||||||||||||| ||||||||||| ||||||||| || |||||| |||||||||||
Sbjct 61 CTCCACTGTCCTCTTCGGACATTTCACTTACGTGGCACAAGGAAGATACCATTACCACAA 120
Query 146 GGGCCGTCACGG-CGTAACGCAtcctcttcctcctcctcctcctcctcctcTTGAAACGG 204
| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGTCGTCACGGCCG-AACGCATCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTGAAACGG 179
Query 205 CCAATCCACCTGATCAAGT-CCCTTCCGACCCGTACCCGAGTCCAGACCCGGCTCCGGGA 263
||||||||||||||||||| ||| || ||||||||||||| |||| ||||||||||||||
Sbjct 180 CCAATCCACCTGATCAAGTACCC-TCTGACCCGTACCCGAATCCAAACCCGGCTCCGGGA 238
Query 264 GATTCTGACTCAGGATGCGTCTTTGACGTTACGTCGTTTGGAGCAGTGGGTGATGGGTCA 323
||||| ||||| |||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 239 GATTCCGACTC---ATGCGTTTTTGACGTTACGTCGTTTGGGGCAGTGGGTGATGGCTCA 295
Query 324 TGCGACGATACGGCAGCATTTCAAGATGCATGGAAAGCCGCTTGTGCTGTCGAATCCGGC 383
|||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||||
Sbjct 296 TGCGACGATACGGCGGCGTTTCAAAATGCATGGAAAGCCGCTTGTGCTGTTGAATCCGGC 355
Query 384 GTCGTTTTGGCACCTGAAGGCGGCGTTTTCAAAATCACCTCCACTATTTTTTCCGGTCCA 443
||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct 356 GTCGTTTTGGCACCTGAAGGCGGCGTTTTTAAAATCACCTCTACTATCTTCTCCGGTCCA 415
Query 444 TGTAAACCGGGTCTTGTATTTCAGTTGGACGGAGTGTTGATGCCACCGGACGGACCAGAG 503
||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 416 TGTAAACCGGGACTCGTATTTCAGTTGGACGGCGTGTTGATGCCACCGGACGGACCAGAA 475
Query 504 GAATGGCCAGAGAAAGACAATAAAAACCAGTGGTTGGTTTTTTACCGCCTCGACGGTTTC 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 476 GAATGGCCAGAGAAAGACAATAAAAACCAGTGGTTGGTTTTTTACCGCCTCGACGGTATC 535
Query 564 ACGTTTTCAGGCAAAGGCACCGTCGAAGGCAATGGTCAAAAATGGTGGGATCTACCTTGC 623
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ACATTTTCCGGCAAAGGCACCGTCGAAGGCAATGGTCAAAAATGGTGGGATCTACCTTGC 595
Query 624 AAGCCCCACAGGGGTCCAGACGGATCATCATCGTCCGGACCATGTGCAAGTCCGACTATG 683
||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 596 AAGCCCCACAGGGGTCCAGACGGATCATCATCGTCGGGACCATGCGAAAGTCCGACTATG 655
Query 684 ATTAGGTTTTTCATGAGCAACAATATAGAGGTTAAAGGATTAAGAATCCAAAACAGTCCA 743
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 656 ATTAGGTTTTTCATGAGCAATAATATAGAGGTGAAAGGATTAAGAATCCAAAACAGTCCA 715
Query 744 CAATTTCACATGAAATTCGACGGATGTCAAGGAGTGTTAATAAACGAAATCCAAATATCG 803
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 716 CAATTTCACATGAAATTCGACGGATGTCAAGGAGTTTTAATAAACGAAATCCAAATATCG 775
Query 804 TCACCAAAACTAAGTCCAAACACAGATGGTATCCATCTCGGAAACACAAGATCTGTTGGC 863
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 776 TCACCAAAACTAAGTCCAAACACCGACGGTATCCATCTCGGAAACACAAGATCTGTTGGC 835
Query 864 ATTTACAATTCTGTCGTTAGCAACGGGGACGATTGCATATCGATTGGAACTGGCTGCTCA 923
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 836 ATCTACAATTCTGTCGTTAGCAACGGGGACGATTGCATTTCGATTGGAACTGGCTGCTCA 895
Query 924 GATGTTGACATTCAAGGTGTCACTTGTGGCCCTAGTCACGGGATCAGCATTGGGAGCTTA 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GATGTTGACATTCAAGGTGTCACTTGTGGCCCTAGTCACGGGATCAGCATTGGGAGCTTA 955
Query 984 GGCGTGCACAATTCACAAGCCTGCGTTTCAAACATAACAGTGAGAAACACCGTGATTCGC 1043
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 956 GGCGTGCACAATTCACAAGCCTGCGTTTCAAACATAACAGTCAGAAACACCGTGATTCGC 1015
Query 1044 GATTCCGATAACGGCCTCCGAGTCAAAACATGGCAAGGCGGTACCGGATCAGTATCAAAT 1103
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1016 GATTCCGATAACGGCCTCCGAGTCAAAACCTGGCAAGGCGGCACCGGATCAGTCTCAAAT 1075
Query 1104 CTCCTCTTCGAAAACATCCAAATGGAGAACGTTCTCAATTGCATAATCGTCGATCAATAC 1163
||||||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 1076 CTCCTCTTCCAAAACATCCAAATGGAAAACGTCCTCAATTGCATAATCGTCGACCAATAC 1135
Query 1164 TATTGCCAATCCAAAGATTGCCGTAACGAAACATCGGCGGTTAAAGTATTCGACGTCGAG 1223
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1136 TATTGCCAATCCAAAGATTGTCGCAACGAAACATCGGCGGTTAAAGTCTTCGACGTCGAG 1195
Query 1224 TATCGGAACATTAAAGGTACTTACGACGTTAGAAGTCCACCGATTCATTTCGCTTGTAGC 1283
||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1196 TATCGAAACATCAAAGGCACTTACGACGTCAGAAGTCCACCGATTCATTTCGCCTGTAGC 1255
Query 1284 GATACCGTCGCGTGTACGAATATAACGATGTCGGAGGTTGAGTTATTGCCGGAAGAAGGT 1343
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1256 GATACCGTCGCTTGTACGAATATAACGATGTCGGAGGTTGAGTTATTGCCGGAGGAAGGT 1315
Query 1344 GAGCTTGTTGATGATCCGTTTTGTTGGAATGCTTATGGGAAACAAGAGACGTTGACGATT 1403
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1316 GAGCTTGTTGATGATCCGTTTTGTTGGAATGCTTATGGGACTCAGGAGACGTTGACGATT 1375
Query 1404 CCGCCGATTGATTGTTTGCTTGATGGATCTCCGGTGGTGGAGGAAGCATATGATTCGAAT 1463
|||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 1376 CCGCCGATTGATTGTTTGCTTGGTGGATCTCCGGTGGTGGAGGAAGCGTTTGATTCGAAT 1435
Query 1464 TATGGTTGTTGAATTTGAATCTCTCCGGTGAAT 1496
||| |||||||||| |||||||||||||||||
Sbjct 1436 TATAGTTGTTGAAT--GAATCTCTCCGGTGAAT 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67610184875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5