BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48300.1 Length=1119 Score E Sequences producing significant alignments: (Bits) Value Ahg913857 jgi|Araly1|913857|Al_scaffold_0001_4111 1367 0.0 > Ahg913857 jgi|Araly1|913857|Al_scaffold_0001_4111 Length=1083 Score = 1367 bits (740), Expect = 0.0 Identities = 844/895 (94%), Gaps = 4/895 (0%) Strand=Plus/Plus Query 1 CGAGATGCGGCgaggagaaagagaaggttaaggttatggagaaggagaagaaggcgttga 60 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 191 CGAGATGCGGCGAGGAGAAAGAAAAGGTTAAGGTTATGGAGAAGGAGAAGAAAGCGTTGA 250 Query 61 agaagaaggcgaaa-gTTCTTAAAAGTCTTTCTAAGAACTTGGATATGTTCTCTAGTATA 119 | |||||||| ||| ||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 251 AAAAGAAGGC-AAAGGTTCTTAAAAGTCTTTCTAAGAACTTGAATATGTTCTCAAGTATA 309 Query 120 GGGTTTGGTCTTGATCCTGAAGCTGGTTTGGTTGGTGAGATTCAGACCAAGACAATCTCG 179 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 310 GGGTTTGGTCTTGATCCTGAAGCTGGTTTGGTTGGTGAGGTTCAGACCAAGACAATCTCG 369 Query 180 GAAGCTACAGAGATATTGGTTAAGCAGCTGGAGCAGTTGAAAGCAGAGGAGAAGATATTG 239 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | ||| Sbjct 370 GAAGCAACAGAGATATTGGTTAAGCAGCTAGAGCAGTTGAAAGCAGAGGAGAAGCTGTTG 429 Query 240 AAGAAACAGAGGAAAGAAGAGAAGGCTAAAGCCAAAGCCATGAAGAAGATGACTGAAATG 299 |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| Sbjct 430 AAGAAACAGAGGAAAGAAGAGATGGCAAAAGCCAAAGCTATGAAGAAGATGACTGAAATG 489 Query 300 GACTCTGAATCATCTTCTTCGTCTGAATCAAGTGATAGTGATTGTGATAAAGGCAAAGTT 359 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 490 GACTCTGAATCATCTTCTTCGTCTGAATCAAGTGACAGTGATTGTGATAAAGGCAAAGTT 549 Query 360 GTGGACATGAGCTCTTTAAGAAACAAGGCTAAACCGGTTCTTGAGCCGTTACAACCAGAA 419 || |||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| Sbjct 550 GTTGACATGAGCTCTCTCAGAAACAAGGCTAAACCGATTCTTGAGCCGTTACAACCAGAA 609 Query 420 GCCACAGTAGCAACCCTTCCTAGGATCCAAGAGGATGCA-ATTTCTTGCAAGAACACCAG 478 ||||||||||||||||||||||| |||||||| |||||| | | |||||||||||||||| Sbjct 610 GCCACAGTAGCAACCCTTCCTAGAATCCAAGAAGATGCACAAT-CTTGCAAGAACACCAG 668 Query 479 TGAAGCATTGCAGATTGCTCTACAAACATCCACAATTTTTCCTTCAATGGCCAATCCTGG 538 ||||||||||||||||||||| ||||||||||| | ||||| ||||||| ||||||||| Sbjct 669 TGAAGCATTGCAGATTGCTCTGCAAACATCCACTGTCTTTCCCTCAATGGGCAATCCTGG 728 Query 539 ACAGACATTGAAGACGGTAGAAGCGGTTTCAGTGGTTGGATTACCATTGAATAGAGTAGA 598 |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 729 ACAGACATTGAAGACGGTAGAAGCGGTTTCAGTGGTTGGATTGCCTTTGAAGAGAGTAGA 788 Query 599 AGTGTGTATGGGAGGGAAGTGTAAGAGATCAGGAGGAGCTTTGTTGTTGGATGAGTTTCA 658 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 789 AGTGTGTATGGGAGGGAAGTGTAAGAAATCAGGAGGAGCTTTGTTGTTGGATGAGTTTCA 848 Query 659 AAGGGCGATGACGGGTTTCGAAGGATCTGCTGTGGCTTGCAAGTGCATGGGGAAGTGTCG 718 |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 849 AAGGGCGATGACGGGTTTCGAAGGTTCCGCTGTGGCTTGCAAGTGCATGGGAAAGTGTCG 908 Query 719 TGATGGCCCAAACGTTAGAGTTGTGAAGGAGACTGATGCTGTGATGACTGATTCAGTTAG 778 |||||| |||||||||||||| || || ||||||||| |||||||||||||||||||||| Sbjct 909 TGATGGTCCAAACGTTAGAGTCGTCAACGAGACTGATACTGTGATGACTGATTCAGTTAG 968 Query 779 GACACCATCCAAGACCCTTTGTGTAGGAGTTGGATTGCAGGATGTGGAAACTATTGTGAC 838 |||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||| Sbjct 969 GACACCGTCCAAGACCGTTTGCGTAGGAGTTGGATTACAGGATGTGGAAACTATTGTGAC 1028 Query 839 AAGTTTCTTTGATGAAGAATGTAGCAGAGAAGGACTCGGTTCTGTCTCATATTGA 893 ||||||||||||||||||||||||||| || |||||||||| ||||||| ||||| Sbjct 1029 AAGTTTCTTTGATGAAGAATGTAGCAGGGAGGGACTCGGTTATGTCTCACATTGA 1083 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41706471198 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5