BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48350.1 Length=705 Score E Sequences producing significant alignments: (Bits) Value Ahg473970 jgi|Araly1|473970|fgenesh2_kg.1__3924__AT1G48350.1 1002 0.0 > Ahg473970 jgi|Araly1|473970|fgenesh2_kg.1__3924__AT1G48350.1 Length=685 Score = 1002 bits (542), Expect = 0.0 Identities = 625/665 (94%), Gaps = 6/665 (1%) Strand=Plus/Plus Query 40 gagccagagagagtgagtaagagagaATGACGAGCGTGAGTGGGTGTGGTTCAGTGAGTC 99 |||| |||| ||| |||| ||| | ||||||||||||||||||||||||||| ||||||| Sbjct 25 GAGCGAGAGCGAGAGAGTGAGATAAAATGACGAGCGTGAGTGGGTGTGGTTCGGTGAGTC 84 Query 100 TGATAACTAACCGCAGTGCGTTCTTGGGAAACGGACTTCAACACCGTGCCGTTTTCCTTA 159 ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| | Sbjct 85 TGATAACTAACCGCAGTACGTTCCTGGGAAGCGGACTTCAACACCGTGCCGTTTTCCTGA 144 Query 160 AACCATGGTCGTCTTCTTCGCTTCAGTCTCGGTCCATGGTTGTCGAAGCCAAAACCAAAA 219 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 145 AACCATGGTCGTCTTCTTCGCTTCAGTCTCGGTCCATGGTTGTTGAAGCCAAAACCAAAA 204 Query 220 CCAGCAGCGAAGACAGAATCGCCCGCCACTCTCGTATCCGTAAGAAGGTTAATGGTACAA 279 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 205 CCAGCAGCGAAGACAGAATCGCCCGCCATTCTCGTATCCGTAAGAAGGTTAATGGTACGA 264 Query 280 CGGAGAGGCCAAGGCTATGTGTTTTCCGATCAAACAAGCATCTTTATGTTCAAGTGATTG 339 | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 265 CAGAGAGGCCAAGGCTCTGTGTTTTCCGTTCAAACAAGCATCTTTATGTTCAAGTGATTG 324 Query 340 ATGATACCAAGATGCACACCTTAGCTTCAGCTTCCACTAAGCAGAAACCAATCTCTGAAG 399 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 325 ATGATACCAAGATGCACACCTTAGCTTCAGCTTCCACTAAGCAGAAACCTATCTCTGAAG 384 Query 400 AGTTCGACTACACCTCTGGACCAACCATTGAGGTAGCGAAGAAAGTTGGGGAAGTGATAG 459 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 385 AGTTTGACTACACCTCTGGACCAACCATTGAGGTAGCAAAGAAAGTTGGGGAAGTGATAG 444 Query 460 CAAAATCTTGCTTGGAGAAAGGTATCACAAAGGTAGCCTTTGACCGTGGTGGTTACCCTT 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 CAAAATCTTGCTTGGAGAAAGGTATCACAAAGGTAGCCTTTGACCGTGGTGGTTACCCTT 504 Query 520 ACCATGGACGTATTGAGGCTCTTGCTGCTGCAGCACGTGAACACGGTCTTCAGTTTTAAC 579 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 505 ACCATGGACGTATTGAGGCTCTCGCTGCTGCAGCACGTGAACACGGTCTTCAGTTCTAAC 564 Query 580 CGTCGTTTTCTTTCCTTGTTTCTTTCCGATGAACAGCAGTGTATGAATGTAGAGAACCCA 639 |||||||| |||||||| || |||| || ||||||| | ||||||||||||||||||| Sbjct 565 CGTCGTTTACTTTCCTTCTTCCTTTATGAGGAACAGC--T-TATGAATGTAGAGAACCCA 621 Query 640 TTTTCCCCAATTGAAATGTTGAGATTTTTCTATAACTATTC-TACA-GCCTAAACCAAGG 697 |||||||| ||||||||||||| ||||||||| || | || || | ||||||||||||| Sbjct 622 TTTTCCCCTATTGAAATGTTGAAATTTTTCTAAAATT-TTGATATAAGCCTAAACCAAGG 680 Query 698 CCCTG 702 ||||| Sbjct 681 CCCTG 685 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25923583560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5