BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48790.1 Length=2009 Score E Sequences producing significant alignments: (Bits) Value Ahg474017 jgi|Araly1|474017|fgenesh2_kg.1__3971__AT1G48790.1 3199 0.0 > Ahg474017 jgi|Araly1|474017|fgenesh2_kg.1__3971__AT1G48790.1 Length=1994 Score = 3199 bits (1732), Expect = 0.0 Identities = 1915/2002 (96%), Gaps = 17/2002 (1%) Strand=Plus/Plus Query 8 CCCTCGAAAGAAAGTCAAATTACTCAACAGCGTCGTTTCTTCTTGTTTATCGCCAATCGC 67 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 CCCTCGAAAGAAAGTCAAATTACTCAACAGCGTCGTTTCTTCTTGTTCATCGCCAATCGC 60 Query 68 CATTATTATCGCGGTGCCTCTTCTCACCCCTCGCCGTCTCTTTGAACCGGAGGTTTCCTC 127 ||||| |||||||||||||||||| || ||||||| ||||||| ||||||||||||||| Sbjct 61 CATTA--ATCGCGGTGCCTCTTCTCTCCTCTCGCCGACTCTTTGGACCGGAGGTTTCCTC 118 Query 128 CACCCTTTGAAAATTCCATCATCGATTGACCTATAGCTACGAGATCTGCTTTTCAATTTG 187 |||||| ||| |||||| |||||||||||||| |||| ||||||||| | ||||||||| Sbjct 119 CACCCTGTGACAATTCCGTCATCGATTGACCTCGAGCTCCGAGATCTGATCTTCAATTTG 178 Query 188 ATGCTCTTCCATTAGTTAGAAAAGTTGCTTTTGA----TC--G--G-AGCAACTATGGGG 238 ||||||||||||||| | | |||||||||||||| || | | ||||||||||||| Sbjct 179 ATGCTCTTCCATTAG-TCGGAAAGTTGCTTTTGATTTCTCTTGTCGAAGCAACTATGGGG 237 Query 239 TCGTCTTTTGAGACCATCGATATCGCTACCAGTGCTCGGAGAATTGGCGTAGATAATCGT 298 ||||||| ||||| |||||||||||| || |||||||||||||||||||||||||||||| Sbjct 238 TCGTCTTCTGAGATCATCGATATCGCAACTAGTGCTCGGAGAATTGGCGTAGATAATCGT 297 Query 299 ATTTCTCTCAAATTTTACTTCAGGATCGCTGATAATATCCTCAAACAGGCCAACATATTT 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 ATTTCTCTCAAATTTTACTTCAGGATCGCTGATAATATCCTCAAACAGGCCAACATATTT 357 Query 359 CGGGCAGAGAAGAATGTTATTGATTTATATGTCATGCTTCTGCGGTTTTCAAGCTTGGCT 418 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 358 CGGGCAGAGAAGAATGTTATTGATTTATATGTCATGCTTCTGCGTTTTTCAAGCTTGGCT 417 Query 419 CTCGAGACTATACCGTCCCATCGAGATTACAGAACATCTCTAAAAAGCAATAAAGAGTAT 478 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 418 CTCGAGACTATACCGTCCCATCGAGATTACAGAACATCTCTAAAAAGCAACAAAGAGTAT 477 Query 479 TTGAGAATGAGACTACTAGATGTCTTGACGGAGCTGGAGAAGTTGAAACCAGTTGTACAG 538 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TTGAGAATGAGACTATTGGATGTCTTGACGGAGCTGGAGAAGTTGAAACCAGTTGTACAG 537 Query 539 CAAAGGATTGATGAACTGTATCCCAAGCTCAAACCTCGATATAACGTTCAAGCTCATCCA 598 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 538 CAAAGGATTGATGAACTGTATCCCAAGCTCAAGCCTCGATATAATGTACAAGCTCATCCA 597 Query 599 GCAAATGGTTCCCTAGGCTGGTCTTCTGCCGTGAAACCGTCATTTAATAGCTATGATCAT 658 ||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 598 TCAAATGGTTCCCTAGGCTGGTCTTCGGCCGTGAAACCATCATTAAATAGCTATGATCAT 657 Query 659 GCAAAGGTAAGAAATCCTCCTGGACATAATTCTGGCTACATGGGTTCCAGGGGTCAGCAA 718 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 658 GCAAAGGTAAGAAATCCTCCTGGACATAATTTTGGCTACATGGGTTCCAGGGGTCAGCAA 717 Query 719 TTTTTGAACGCTGCACCACTTGAAGAGCGTTTCCGAAAGATGTCGGTGAACTTCCGACCA 778 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TTTTTGAATGCTGCACCACTTGAAGAGCGTTTCCGAAAGATGTCGGTGAACTTCCGACCA 777 Query 779 AATGAAGAAACCCTTTCCAAGCATTCTATCTTGGGTCCAGGTGGACTCTCTGCACAGTGG 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 AATGAAGAAACCCTTTCCAAGCATTCTATCTTGGGTCCAGGTGGACTCTCTGCACAGTGG 837 Query 839 CAGCCACCAAAGTATGATACAAAGGTTCAATATCCAAGCAATATAGATTTTTCGCCTGTT 898 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 CAGCCTCCAAAGTATGATACAAAGGTTCAATATCCAAGCAATATAGATTTTTCGCCTGTT 897 Query 899 GTAATCCCAAGCTTCCAACAACTTGTGGACAGCAAACCAATGATAACGAATGGCAGTAAC 958 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 898 GTAATCCCAAGCTTCCAACAATTTGTGGACAGCAAACCAATGATAACGAATGGCAGTAAC 957 Query 959 GATGAACCTGAAAAGCCAATTGTGGAACCCAGTGTTGCATCTAATGAAAAAATCCAGAAA 1018 ||||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||||| Sbjct 958 GATGAACCTGAAAGGCCAATTGTGGAACCAAGTGTTGCATCTAGTGAAAATATCCAGAAA 1017 Query 1019 AATTACACTGAAGAGCTTTCTTCCATGATTTCTTTCGAAGAGCCAGAAAGCGTTAATGAG 1078 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1018 AATTACACTGAAGAGCTTTCTTCCATGATTTCTTTCGAAGAGCCAGAAAGCGTTACTGAT 1077 Query 1079 AACAATCTCATTAGGCAACCTTCACCACCTCCAGTGCTAGCAGAAGTTCAAGACTTGGTT 1138 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1078 AATAATCTCATTAGGCAACCTTCACCACCTCCGGTGCTAGCAGAAGTTCAAGACTTGGTT 1137 Query 1139 CCTGCTTTATGTCCTGAAGTTAGAGAACCGGAATGTATGATAGAAAACTCTCTGCCGGAT 1198 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1138 CCTGCTTTATGTCCTGAAGTTAGAGAACCGGAATGTATCATAGAAAACTCTCTGCCAGAT 1197 Query 1199 GAGTCTCTACGGTCGGAGTCTCCTCTTGAACTTCATATTGCGACTTCAATGATGGATACC 1258 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1198 GAGTCTCTACGGTCGGAGTCTCCTCTTGAACTTCATATTGCAACAACAATGATGGATACC 1257 Query 1259 TTTATGAGGCTTGCCAAGTCAAACACTAAAAAGAATTTAGAGACGTGTGGTATTCTTGCC 1318 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1258 TTTATGAGGCTTGCCAAGTCAAACACTAAAAAGAATTTAGAGACGTGTGGTATACTTGCT 1317 Query 1319 GGTTCACTAAAAAACAGAAAATTTTACATTACAGCTCTCATCATACCAAAGCAGGAATCG 1378 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 GGCTCACTGAAAAACAGAAAATTTTACATTACAGCTCTCATCATACCAAAGCAGGAATCG 1377 Query 1379 ACATCTGACTCGTGTCAGGCCACGAACGAAGAAGAGATATTTGAAGTACAGGACAAGCAA 1438 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1378 ACATCTGACTCGTGTCAGGCCACAAACGAAGAAGAGATATTTGAAGTACAGGACAAGCAA 1437 Query 1439 TCCCTTTTCCCACTCGGATGGATTCATACGCATCCGACACAGTCTTGTTTCATGTCATCC 1498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 TCCCTTTTCCCACTCGGATGGATTCATACGCATCCGACACAGTCTTGTTTCATGTCATCC 1497 Query 1499 ATTGATGTTCACACACACTATTCATACCAGATTATGTTACCAGAAGCTGTGGCAATCGTT 1558 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1498 ATTGATGTTCACACGCACTATTCATACCAGATTATGTTACCAGAAGCTGTGGCGATCGTT 1557 Query 1559 ATGGCGCCACAAGACTCTTCAAGGAATCACGGAATATTTCGGCTGACGACGCCGGGAGGA 1618 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1558 ATGGCGCCACAAGACTCTTCAAGGAATCACGGAATATTCCGGCTGACGACGCCGGGAGGA 1617 Query 1619 ATGACGGTGATAAGGAATTGTGACCGGCGTGGGTTTCATGCGCACAGTTCACCGGAGGAC 1678 ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| Sbjct 1618 ATGACGGTGATAAGGAATTGTGACCAGCGTGGGTTTCATGCGCACAGTTCGCCGGCGGAC 1677 Query 1679 GGAGGGCCAATTTACAATACCTGTAAGGAAGTTTACATGAACCCAAATCTCAAGTTTGAT 1738 ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1678 GGAGGACCAATTTACAATACGTGTAAGGAAGTTTACATGAACCCTAATCTCAAGTTTGAT 1737 Query 1739 GTCATTGATCTCAGATAGCATCACTTGCGCGTTTGAAAGTGAAACTATGTTCTCAAGGCC 1798 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1738 GTCATTGATCTCAGATAGCATCACTTGCGCGTTTGAGAGTGAAACTATGTTCTCAAGGCC 1797 Query 1799 ATCTTTTCTCTACGATTGTAACAATTATGTATCTGTTTATATCCCGATTTTAATATGATC 1858 || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1798 AT-TTT-CTCTACGATTGTAACAATTATGTATCTGTTTATATCCCGATTTTAATATGATT 1855 Query 1859 TACGTAAGTTTTCGTGTACAATAATTATATGTTTACAAGGCTTACATGTAAAACTGAACA 1918 || |||||||||| |||||||| | ||||||||||||| ||||||||||||||||||| Sbjct 1856 TATGTAAGTTTTCATGTACAAT--T-ATATGTTTACAAGTCTTACATGTAAAACTGAACT 1912 Query 1919 AAAATCAAGATACAAGAGCAAGTGATTTGTGCTAAAGTTATCGTTGTGTCACCATCTATT 1978 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1913 AAAATCAAGATACAAGAGCAAGTGATTTGTGATAAAGTTATCGTTGTGTCACCATCTATT 1972 Query 1979 CAAACCTACGTAATATTTTTAC 2000 ||||||||| ||||||| |||| Sbjct 1973 CAAACCTACATAATATTATTAC 1994 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75532955835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5