BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48840.1
Length=2473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474021 jgi|Araly1|474021|fgenesh2_kg.1__3975__AT1G48840.1 3489 0.0
> Ahg474021 jgi|Araly1|474021|fgenesh2_kg.1__3975__AT1G48840.1
Length=2402
Score = 3489 bits (1889), Expect = 0.0
Identities = 2146/2270 (95%), Gaps = 17/2270 (1%)
Strand=Plus/Plus
Query 1 ACACCGGAGAGATCC---TT---ACCGTCTCACTTTCTCCGCTTCTCTTGTTTGTCACTT 54
||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1 ACACCGGAGAGATCCTTATTACCACCGTCTCACTTTCTCCGCTTCTCTTGTTTGTCACTT 60
Query 55 TTCGTTAAACCCCAATTCACGGCAGAATCTTGATAATTGGAGAAAACGAAAGCGTTTATG 114
|||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 61 TTCGATAAACCCCAATTCACGGCAGAATCTTGATAATTGGAGAAAACG-AAGCTTTTATG 119
Query 115 GTGTTGTGGGAGAACAATTCATAGTTGTGAAGTTAGTTG-----GATTCAAGGTGAAGAA 169
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 GTGTTGTAGGAGAACAATTCATAGTTGTGAAGTTAGTTGATTTTGATTCAAGGTGAAGAA 179
Query 170 ATCTAAGTATGTCGAGCAGAACTATGGATGTTCTAGAAGGTCTGGTTAAAGATAGTTCAC 229
|||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 180 ATCTAACTATGTCGAGCAGAACTCGGGATGTTTTAGAAGGTCTGGTTAAAGATAGTTCAC 239
Query 230 TTAAATGGTTGCTTGGGAAGCAAAGTTCTTTTGATGAAGAAATCGAAGAGATTGAGAATT 289
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 240 TTAAATGGTTGCTTGGGAAGCAAAGTTCTTTCGATGAAGAAATCGAGGAGATTGAGAATT 299
Query 290 CTCCATCTGCTGGTGCCAATTGGATACCTGAGCTTTCTCCAGTAGCAAATGTTGTTATTC 349
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 300 CTCCATCTGCTGGTGCCAACTGGATACCTGAGCTTTCTCCAGTGGCAAATGTTGTCATTC 359
Query 350 GCAGGTGTTCAAAGATACTTGGTGTTGCAGTAAGTGAGCTACAAGATAGTTTCAAACAGG 409
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 360 GCAGGTGTTCAAAAATACTTGGTGTTTCAGTAAGTGAGCTACAAGATAGTTTCAAACAAG 419
Query 410 AGGCGTCTGAGTCTGTTAAGCAGCCTTCAATGTTTCCAAGAAACTTTCTAGAGTACTGCT 469
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGCGTCTGAATCTGTTAAGCAGCCTTCAATGTTTCCAAGAAACTTTCTAGAGTACTGCT 479
Query 470 GTTTCAGGGCACTTGCACTGTCTGTTGGAGTAACAGGTCATTTAAGTGATAAAAGTTTTC 529
||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||
Sbjct 480 GTTTCAGGGCACTTGCACTCTCTGTTGGAGTAACAGGTCATCTAAGCGATAAAAACTTTC 539
Query 530 GACGTTTAACTTTTGATATGATGGTCGCTTGGGAGGTGCCTTCCGCTGCTAGCCAGACAT 589
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 540 GACGTTTAACTTTTGATATGATGGTTGCTTGGGAGGTTCCTTCCGCTGCTAGCCAGTCAT 599
Query 590 TACTCAGTGTTGATGAAGATCCAACCGTTGGTTTAGAAGCCTTCTCACGGATTGCTCCAG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TACTCAGTGTTGATGAAGATCCAACCGTTGGTTTAGAAGCCTTCTCACGGATTGCTCCAG 659
Query 650 CAGTTCCGATAATAGCTGATGTGATCATATGTGAGAATTTGTTTGGGATACTGACTTCCG 709
||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 660 CAGTTCCTATAATTGCTGATGTGATCATATGTGAGAATTTGTTTGGGATGCTGACTTCTG 719
Query 710 TCTCAAACAGTGTTCGGCTTCAGTTTTATGTTTATGACAAGTATTTGTATGGACTTGAAA 769
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CCTCAAACAGTGTTCGGCTTCAGTTTTATGTTTATGACAAGTATTTGTATGGACTTGAAA 779
Query 770 GAGCAATAAAGAAGATGAAGAGCCAGTCCGAGTCATCTTTACTTTCTGGTGTTCGATCAA 829
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 780 GAGCAATAAAGAAGATGAAGAACCAGTCCGAGTCATCTTTACTTTCCGGTGTTCGATCAA 839
Query 830 AAGGAGAAAAGATTCTTGAGCTCGATGGTACAGTTACTACCCAACCAGTTCTTGAACATA 889
|||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||
Sbjct 840 AAGGAGAAAAGATTCTTGAGGTCGACGGGACAGTTACTACCCAACCAGTTCTTGAACATA 899
Query 890 TTGGAATATCTACATGGCCAGGTCGCTTGATTCTTACTGATCATTCACTATATTTTGAGG 949
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 900 TTGGAATCTCTACATGGCCAGGTCGCTTGATTCTGACTGATCATTCACTCTATTTTGAGG 959
Query 950 CTATAAAGGTTGTATCCTTCGACACACCAAAGCGTTATAGCCTATCTGATGATCTGAAAC 1009
||||||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 960 CTATAAAGGTTGTTTCGTTCGACACACCAAAGCGTTATAGCCTCTCTGAAGATCTGAAAC 1019
Query 1010 AAGTCATTAAACCCGAGTTAACCGGTCCTTGGGGGACTCGGCTTTTTGATAAGGCCGTCT 1069
||||||||||||| |||||||||||||||||||| |||||||| || |||||||| || |
Sbjct 1020 AAGTCATTAAACCTGAGTTAACCGGTCCTTGGGGCACTCGGCTGTTCGATAAGGCTGTTT 1079
Query 1070 CTTACAAGTCTATTTCCCTACCAGAACCAGTAGTAATGGAGTTCCCTGAGCTTAAGGGTC 1129
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1080 CTTACAAGTCTATTTCCCTACCAGAACCAGTAGTAATGGAGTTCCCCGAGCTCAAGGGCC 1139
Query 1130 ACACACGAAGAGATTACTGGCTCGCGATAATCCTAGAAGTGTTATATGTTCACAGATACA 1189
||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1140 ACACAAGACGAGATTACTGGCTCGCAATAATCCTAGAAGTGTTATATGTTCACAGATACA 1199
Query 1190 TAAAGAAGTTCAAGATC-A-AC-AGTGTGGCGAAAGATGAAGCTATCTCAAAAGCTGTCC 1246
||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |
Sbjct 1200 TAAAGAAGTTCAAGATCAACACGAGTGTGGCGAAAGATGAAGCTATCTCAAAAGCTGTAC 1259
Query 1247 TCGGCATATTACGCGTGCAGGCCATTCAAGAAGTTGGTTTGACAAACCCTGTGCGTTACG 1306
||||||| ||||||||||| |||||||||||| | ||||| |||||||||||||| || |
Sbjct 1260 TCGGCATTTTACGCGTGCAAGCCATTCAAGAACTCGGTTTAACAAACCCTGTGCGGTATG 1319
Query 1307 AGAATCTTCTTCCGTTCAATCTCTGCGATCAGCTTCCTGGTGGAGATCGTATACTGGAGA 1366
||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 1320 GGAATCTTCTCCCGTTCAATCTCTGTGATCAGCTTCCTGGTGGAGACCGTATTCTGGAGA 1379
Query 1367 CGCTTGCAGAGATGTCGAGTTCTAGAGTACTTGACCGAACTGCCAAAGCCAAAGAAGGGA 1426
|||||||||||||||| | ||||||||| |||||||| || |||||||||||||||||
Sbjct 1380 CGCTTGCAGAGATGTCTACTTCTAGAGTGCTTGACCGGACAAACAAAGCCAAAGAAGGGA 1439
Query 1427 CATTGCACTCGATCTCGGCCTCGGATATGGTTTCGCAGTTGGGTTTGGTGTTTGGAGCAA 1486
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1440 CATTGCACTCGATCTCGGCCTCGGATATGGTTTCGCAATTGGGTTTGGTGTTTGGAGCAA 1499
Query 1487 CAAGTCCAAAGAGTAGAAGTAGTCTAGTGGTAGGTGAGGTGATGGTTGGAGATGTGAATC 1546
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1500 CAAGTCCAAAGAGTAGAAGTAGTCTTGTGGTAGGTGAGGTGATGGTTGGAGATGTGAATC 1559
Query 1547 CATTGGAGAAAGCAGTTAAGCAATCAAGAAAGAACTATGAGAAAGTGGTTCTTGCGCAAG 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1560 CATTGGAGAAAGCAGTTAAGCAATCAAGAAAGAACTATGAGAAAGTGGTTCTTGCACAAG 1619
Query 1607 AGACTGTTAATGGAGTTAAAGTTGATGGAATTGACACCAATGTAGCAGTGATGAAGGAAC 1666
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AGACGGTTAATGGAGTTAAAGTTGATGGAATTGACACCAATGTAGCAGTGATGAAGGAAC 1679
Query 1667 TACTACTTCCGGCTACAGAAATAGGGAATTGGCTTTTGTCATTAG-TATATTGGGAAGAT 1725
| |||||||||| || |||||| ||||||||||||||||| |||| | |||||||| |||
Sbjct 1680 TGCTACTTCCGGTTATAGAAATCGGGAATTGGCTTTTGTCGTTAGCT-TATTGGGAGGAT 1738
Query 1726 CCATTGAAGTCTTTTGTTTTCTGTCTCTTGTCCACTTTCATAATTTACAGGGGGTGGATT 1785
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1739 CCATTGAAGTCTTTTGTTTTCTGTCTCTTCTCAACTTTCATAATTTACAGGGGGTGGATT 1798
Query 1786 GGCTATGTTTTCGCGATTGCAACTCTCTTTATAGCGGGTTTCATGGTTCTAACGAGATAT 1845
||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1799 GGCTATGTTTTTGCGATTGCGTCTCTCTTTATAGCGGGTTTCATGGTTCTCACGAGATAT 1858
Query 1846 TTCAGCAATAGAGAGAAAGTAATGATCGAGCTGAAAGTCATGGCACCGCCTCCTATGAAC 1905
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 1859 TTCAGCAATAGAGAGAAAGTAATGATCGAGCTGAAAGTTATAGCGCCGCCTCCTATGAAC 1918
Query 1906 ACAATGGAACAGCTTTTAGCGGTCCAAAACGCCATTTCACAGCTCGAACAGTTAATCCAA 1965
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1919 ACAATGGAACAGCTTTTAGCAGTCCAAAACGCGATTTCACAGCTCGAACAGTTAATCCAA 1978
Query 1966 GACGCAAACATTGTTCTCCTCAAGTTCCGAGCTTTATTACTTTCGCTTTTCCCACAGGCG 2025
|||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 1979 GACGCAAACATTGTTCTCCTCAAGTTCCGAGCTTTACTACTCTCTCTTTTCCCACAGGCG 2038
Query 2026 AGTGAGAAGTTTGCGGTTGCGATTGTGATCGCTGCAACGATGATGGCATTGGTGCCTTGG 2085
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 2039 AGTGAGAAGTTTGCGGTTGCGATTGTGATCGCTGCGTCGATGATGGCATTAGTGCCTTGG 2098
Query 2086 AACAATCTGATTCTGGTGGTGTTTCTTGAACTGTTCACAAGATACTCACCACCACGAAGA 2145
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||
Sbjct 2099 AACAATCTGATTCTGGTGGTGTTTCTTGAGCTGTTCACAAGATACTCGCCACCGCGTAGA 2158
Query 2146 GCAAGCACGGAACGGTTGATGCGGCGGCTTAAAGAGTGGTGGTTTAGCATTCCGGCTGCT 2205
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2159 GCAAGCACGGAACGGTTGATGCGGCGGCTTAAAGAGTGGTGGTTCAGCATTCCGGCTGCT 2218
Query 2206 CCGGTCCTTCTTGAACAGAGCAAAGACGATAACAAGAAAACCAAGTAAAA 2255
||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 CCGGTTGTTCTTGAACAGAGCAAAGACGATAACAAGAAAACCAAGTAAAA 2268
Score = 91.6 bits (49), Expect = 2e-17
Identities = 97/118 (82%), Gaps = 12/118 (10%)
Strand=Plus/Plus
Query 2353 TACATGTATCATGTATGTTGTAGAAAAGTGTTTG-GTT-TTAC-ACCa-aa-aaaaTTAT 2407
||||| || ||||||||||||| |||||| |||| || |||| | | || ||| || |
Sbjct 2291 TACATTTA-CATGTATGTTGTACAAAAGTTTTTGAATTATTACTA-TAGAATAAAGTT-T 2347
Query 2408 AGAAAATAGTTTATGTT-CGTGGTAAAATCACATTTAGCTGAATGATATAGAAGCAAA 2464
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 2348 ---AAATAGTTTATGTTCCGTGGTAAAATCACATTTAGCTGAATGATGCAGTAGCAAA 2402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93206829515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5