BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49010.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923259 jgi|Araly1|923259|scaffold_104540.1 1565 0.0
> Ahg923259 jgi|Araly1|923259|scaffold_104540.1
Length=973
Score = 1565 bits (847), Expect = 0.0
Identities = 941/984 (96%), Gaps = 16/984 (2%)
Strand=Plus/Plus
Query 52 aaagaTTGAAGCAATCGAATGGAGAGTGTGGTGGCAACATGGAGCAGAGAAGAAGAGAAA 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AAAGATTGAAGCAATCGAATGGAGAGTGTGGTGGCAACATGGAGCAGAGAAGAAGAGAAA 62
Query 112 GCATTCGAGAACGCAATTGCGTTGCATTGTGTAGAGGAAGAGATAACAGAGGATCAATGG 171
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 63 GCATTCGAGAACGCAATTGCGTTGCATTGTGTAGAGGAAGAGATAACAGAGGACCAATGG 122
Query 172 AACAAAATGTCGTCAATGGTACCAAGCAAAGCCTTAGAAGAAGTAAAGAAACATTACCAA 231
||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 123 AACAAAATGGCGTCAATGGTTCCAAGCAAAGCTTTAGAAGAAGTAAAGAAACATTACCAA 182
Query 232 ATCCTTTTAGAAGATGTCAAAGCAATCGAGAATGGTCAAGTTCCTTTACCTCGTTATCAT 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 183 ATCCTTTTAGAAGATGTCAAAGCAATCGAGAATGGTCAAGTTCCTTTACCTCGTTATTAT 242
Query 292 CACCGCAAAGGTCTCATCGTAGATGAAGCAGCAGCAGCAGCTACTTCTCCTGCCAACAGA 351
|||||||||||||||||||| ||| | | ||||||| ||||||||||| ||||||
Sbjct 243 CACCGCAAAGGTCTCATCGTCGAT---G-A--AGCAGCA---ACTTCTCCTGCTAACAGA 293
Query 352 GACTCTCATTCCTCTGGATCATCTGAGAAGAAACCAAATCCTGGCACCTCCGGGATAAGT 411
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 294 GACTCTCATTCCTCTGGATCATCGGAGAAGAAACCAAACCCTGGAACCTCCGGGATAAGT 353
Query 412 AGCTCCAATGGAGGAAGAAGTGGTGGCTCGAGAGCTGAGCAAGAGAGAAGAAAAGGGATT 471
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 354 AGCTCCAATGGAGGAAGAAGTGGTGGCTCCAGAGCTGAGCAAGAGAGAAGAAAAGGGATT 413
Query 472 CCATGGACTGAAGAAGAGCATCGGTTGTTTCTTTTGGGTTTGGACAAGTTTGGGAAAGGA 531
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 414 CCATGGACTGAAGAAGAGCATCGGTTGTTTCTTTTGGGTTTGGACAAATTTGGGAAAGGA 473
Query 532 GATTGGAGAAGCATTTCAAGGAACTTTGTGATCTCAAGAACTCCAACACAAGTTGCAAGT 591
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 474 GATTGGAGAAGCATTTCTAGGAACTTTGTGATCTCAAGAACTCCGACACAAGTTGCAAGT 533
Query 592 CATGCTCAAAAATACTTCATCAGGCTTAACTCGATGAACCGAGATAGAAGGCGGTCTAGC 651
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 534 CATGCTCAGAAATACTTCATCCGGCTTAACTCGATGAACCGAGATAGAAGGCGGTCAAGC 593
Query 652 ATTCACGACATCACCACTGTGAACAATCAAGCTCCTGCGGTTACAGGAGGAGGACAACAA 711
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 594 ATTCACGACATCACCACTGTGAACAATCAAGCTCCTGCGGTTACAGGAGGACAACAACAA 653
Query 712 CCGCAAGTGGTTAAACATAGACCAGCTCAGCCACAACCACAGCCACAACCGCAACCACAA 771
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 654 CAACAAGTGGTTAAACATAGACCAGCTCAGCCACAACCACAACCACAACCGCAACCACAA 713
Query 772 CAACATCATCCCCCAACAATGGCTGGATTAGGGATGTATGGTGGTGCGCCAGTGGGACAA 831
| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 714 CCACATCATCCACCAACAATGGCTGGATTAGGGATGTATGGTGGTGCGCCTGTGGGACAA 773
Query 832 CCGATCATCGCACCACCTGATCATATGGGTTCAGCTGTTGGAACACCTGTGATGCTTCCA 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CCGATCATCGCACCACCTGATCATATGGGTTCAGCTGTTGGAACACCTGTGATGCTTCCA 833
Query 892 CCTCCAATGGGAACtcatcatcatcaccatcaccatcatcTTGGAGTTGCTCCTTATGCT 951
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 834 CCTCCAATGGGAACTCATCATCA-C-C-ATCACCATCATCTTGGAGTTGCTCCTTATGCT 890
Query 952 GTACCGGCTTATCCGGTACCGCCATTACCGCAGCAACATCCAGCTCCGTCGACAATGCAC 1011
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 891 GTACCGGCTTATCCGGTACCACCATTACCGCAACAACATCCAGCTCCGTCGACAATGCAC 950
Query 1012 TGACTGAAAACAATACAGTTGGTA 1035
|||| || ||||||||||||||
Sbjct 951 TGAC--AA--CAATACAGTTGGTA 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5