BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49310.1
Length=425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314350 jgi|Araly1|314350|fgenesh1_pm.C_scaffold_1003130 412 8e-115
> Ahg314350 jgi|Araly1|314350|fgenesh1_pm.C_scaffold_1003130
Length=246
Score = 412 bits (223), Expect = 8e-115
Identities = 242/250 (97%), Gaps = 5/250 (2%)
Strand=Plus/Plus
Query 43 ATGAAGCAACAGCAACGTTACTTGGTCGTCTTCATCGTCCTTTTAAGCTTTCTTCTGTTT 102
||||||| | | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAAGC-A-A-CAACGTTACTTGGTCGTCTTCATCGTCCTTTTCAGCTTTCTTCTGTTT 57
Query 103 GTGAATCTGAGTGAAGGAAGAACAGGAGGAGTTGCAGAAGAATATTGGAAGAAGATGATG 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GTGAATCTGAGTGAAGGAAGAACAGGAGGAGTTGCAGAAGAATATTGGAAGAAGATGATG 117
Query 163 AAGAATGAACCGTTGCCTGAACCAATCAAAGAGCTTCTCAACAATCCTTTTAGGACCG-C 221
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 118 AAGAATGAACCGTTGCCTGAACCAATCAAAGAGCTTCTCAACAATCCGTTTAGGACCGGC 177
Query 222 ACAAGAGAGATTCATCCAGAATTTCGACACCAAATCTGTTGTCATCATCTACCACAATCC 281
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 178 -CAAGAGAGATTCATCCAGAATTTCGACACCAAATCTGTTGTCCTCATCTACCACAATCC 236
Query 282 TAATGAATAA 291
||||||||||
Sbjct 237 TAATGAATAA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15300391189
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5