BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G49320.1 Length=1154 Score E Sequences producing significant alignments: (Bits) Value Ahg474072 jgi|Araly1|474072|fgenesh2_kg.1__4026__AT1G49320.1 1539 0.0 > Ahg474072 jgi|Araly1|474072|fgenesh2_kg.1__4026__AT1G49320.1 Length=1071 Score = 1539 bits (833), Expect = 0.0 Identities = 1021/1104 (92%), Gaps = 43/1104 (4%) Strand=Plus/Plus Query 1 ATTGAGATCTAAGATCACTTGAACACTTATAAAAAATATTTTGCTCTTCTTTCTATATAT 60 |||||||||||||||||||| ||| |||||||||| |||||| |||| | | | | Sbjct 1 ATTGAGATCTAAGATCACTT------TTA-AAAAAATATTCTGCTCTCCTTT-T-T-T-T 49 Query 61 TTATATAAAAAGTCAAAATATCaagaagaggaagaagaagaagaaACTCATTTTCTCCGC 120 || | |||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 50 ATAAACAAAAAGTCAAAATATCAAGAAGAGGAAGAAGAAGAAGAAACTCA--TT-T---- 102 Query 121 AGAGAAAATACAATCCATGGCTTCTACTTTTAGGCTCTCTATTAGCTTCCTCACTCTCAT 180 | | | |||||||||||||||||||||||||||||||||||||||||| | Sbjct 103 --------T-C--T--ATGGCTTCTACTTTTAGGCTCTCTATTAGCTTCCTCACTCTCCT 149 Query 181 CCTCTTCTCTCTGTGGGTAGTGGAGGCACACACGTCTAGAAAGTTGATATCAATCAAGGA 240 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 150 CCTCTTCTCTCTGTGGGTAGTGGAGGCACACACGTCAAGAAAGCTGATATCAATCAAGGA 209 Query 241 AAAAGAAGGTCAAGATATTAGTCATTTGCTCAAAGATGGTGAATTTGATGACCCTTCGTT 300 ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 210 AAACGAAGGTCAAGATATTAGTCATTTGCTCAAAGATGGTGAATTCGATGATCCTTCATT 269 Query 301 GTACATGTATTTCACACTCAATGATCTCAAACTAGGAACCAAATTGCTGATTTACTTCTA 360 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 270 GTACATGTATTTCACACCCAATGATCTCAAACTAGGAACCAAATTGCTGATTTACTTCTA 329 Query 361 CAAAAACGATCTTCAAAAGCTTCCTCCACTTCTCACAAGACAACAAGCCGATCTCATTCC 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 330 CAAAAACGATCTTCAAAAGCTTCCTCCACTTCTCACAAGACAACAAGCTGATCTCATTCC 389 Query 421 TTTCACTAAGTCAAAGCTTGACTTCCTTCTCGACCACTTCTCTATCACCAAAGACTCTCC 480 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 390 TTTCACTAAGTCAAAGCTTGACTTCCTTCTCGACCACTTCTCGATCACCAAAGACTCTCC 449 Query 481 TCAAGGGAAAGCCATAAAGGAGACTTTGGGACATTGTGATGCTAAAGCTATTGAAGGAGA 540 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 450 TCAAGGGAAAGCCATAAAGGAGACTCTGGGACATTGTGATGCTAAAGCTATTGAAGGAGA 509 Query 541 GCATAAGTTTTGTGGAACTTCTTTGGAGTCATTGATCGATCTTGTGAAGAAAACAATGGG 600 |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 510 GCATAAGTTTTGCGGGACTTCTTTGGAGTCTTTGATCGATCTCGTGAAGAAAACAATGGG 569 Query 601 GTATAATGTTGACCTCAAGGTCATGACGACTAAAGTAATGGTACCGGCCCAAAATTCGAT 660 ||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| || Sbjct 570 GTATAATGTTGACCTCAAGGTCATGACAACTAGAGTAATGGCACCGGCCCAAAATTCTAT 629 Query 661 AAGCTACGCTTTGCATAACTACACATTCGTCGAGGCTCCAAAGGAACTTGTTGGGATTAA 720 ||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| Sbjct 630 AAGCTACGCTTTGCATAACTATACATTCGTCGAGGCTCCTAAGGAACTTGTCGGTATTAA 689 Query 721 GATGTTGGGATGTCACAGAATGCCT-TACCCTTATGCTGTTTACTATTGCCATGGACATA 779 |||||||||||| || |||||| || |||||||||||||||||||||||||| ||||||| Sbjct 690 GATGTTGGGATGCCATAGAATG-CTATACCCTTATGCTGTTTACTATTGCCACGGACATA 748 Query 780 AAGGTGGAAGTAGAGTCTTTGAAGTTAATTTGGTGACGGATGATGGGAGACAACGGGTAG 839 |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 749 AAGGTGGAAGCAGAGTCTTTGAAGTTAATCTGGTGACGGATGATGGGAGACAACGGGTTG 808 Query 840 TAGGACCCGCTGTCTGCCACATGGACACATCCACGTGGGACGCGGATCATGTAGCTTTTA 899 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 809 TAGGACCCGCTGTCTGCCACATGGACACGTCCACGTGGGATGCGGATCATGTAGCTTTTA 868 Query 900 AGGTGTTGAAGATGGAGCCGAGGTCAGCACCGGTTTGCCATTTCTTCCCTCTTGATAACA 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 869 AGGTGTTGAAGATGGAGCCGAGGTCAGCACCGGTTTGCCATTTCTTCCCTCTTGATAACA 928 Query 960 TTGTGTGGGTAACAAAGTAAGAAAATAGACGTAGCTCTATATAATGTGAGTATGTGTTTG 1019 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 929 TTGTGTGGGTAACAAAGTAAGAAAATAGACTTAGCTCTATATAATGTGAGTATGTGTT-G 987 Query 1020 TAATAACTATGGTTTgaaagg-aaaaa----g-aaaagaaaagaaaa-a--gaCAGCCTT 1070 |||||||||||||||||||| ||||| | |||| |||| |||| | ||||||||| Sbjct 988 TAATAACTATGGTTTGAAAGATAAAAAAAAAGGAAAAAAAAAAAAAAGAAAGACAGCCTT 1047 Query 1071 AATGTTGGCTTTGGTATTGCCTCT 1094 |||||||||||||||||||||||| Sbjct 1048 AATGTTGGCTTTGGTATTGCCTCT 1071 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43040773293 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5