BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49390.1
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474077 jgi|Araly1|474077|fgenesh2_kg.1__4031__AT1G49390.1 1587 0.0
Ahg488949 jgi|Araly1|488949|fgenesh2_kg.6__2083__AT5G20400.1 1323 0.0
Ahg917070 jgi|Araly1|917070|Al_scaffold_0008_1821 573 9e-163
Ahg941606 jgi|Araly1|941606|scaffold_602150.1 313 2e-84
> Ahg474077 jgi|Araly1|474077|fgenesh2_kg.1__4031__AT1G49390.1
Length=1048
Score = 1587 bits (859), Expect = 0.0
Identities = 986/1048 (94%), Gaps = 6/1048 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCCGGTC-AAGGACTACC 59
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1 ATGGAGAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCCGG-CGAAGGACTACC 59
Query 60 GGAGAGATATCTCCATGCA-CCAACCGGCGAAGGCGAAAGTCAACCACTTAACGGTGCGG 118
||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||| |||
Sbjct 60 GGAGAGATATCTCCATG-AGCCAACCAGCGAAGGCGAAAGTCAACCTCTTAACGGTTCGG 118
Query 119 TGCCGGAGATGGATATTCCGGCCATCGATCTCAGTCTTCTCTTCTCTTCCTCTGTAGACG 178
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| |
Sbjct 119 TGCCGGAGATGGATATTCCAGCCATCGATCTCAGTCTTCTCTTCTCTTCTTCTGAAGAGG 178
Query 179 GTCAAGAAGAGATGAAGAAACTTCACTCAGCACTCTCTACATGGGGCGTTGTTCAGGTGA 238
||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 179 GTCGAGAAGAGTTGAAGAAACTTCACTCAGCACTATCTACATGGGGCGTTGTTCAGGTGA 238
Query 239 TGAATCATGGAATTACTGAAGCTTTTCTTGACAAGATTTACAAGCTAACCAAGCAGTTCT 298
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 239 TGAATCATGGAATTACTGAAGAGTTTCTTGACAAGATTTACAAGCTAACCAAGCAGTTCT 298
Query 299 TTGCGCTTCCGACCGAAGAGAAACACAAGTGTGCTAGAGAGACAGGTAATATCCAAGGAT 358
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 299 TTGCGCTTCCAACCGAAGAGAAACACAAGTGCGCGAGAGAGACAGGTAATATCCAAGGAT 358
Query 359 ATGGTAACGATATGATTCTGTCTGATAATCAAGTTCTTGATTGGATCGACCGTTTGTTTC 418
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 ATGGAAACGATATGATTCTGTCCGATAATCAAGTTCTTGATTGGATCGACCGTTTGTTTC 418
Query 419 TCACTACTTACCCTGAAGATAAGCGTCAACTTAAATTCTGGCCTCAAGTCCCTGTCGGAT 478
|||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |
Sbjct 419 TCACTACTTACCCTGAAGATAAGCGTCAACTTCAGTTCTGGCCTCAAGTCCCGGTCGGGT 478
Query 479 TCAGCGAGACGTTAGATGAATACACAATGAAGCAACGGGTATTGATTGAGAAATTCTTTA 538
|||| || || ||| |||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 479 TCAGTGAAACTTTACATGAATACACGATGAAGCAACGGGTAGTGATTGAGAAATTCTTTA 538
Query 539 AGGCTATGGCTAGATCATTGGAATTGGAAGAGAATTGTTTTCTAGAAATGTATGGAGAAA 598
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 AGGCTATGGCTAGATCATTGGAATTGGAAGAGAATTGTTTTCTAGAGATGTATGGAGAAA 598
Query 599 ATGCTGTAATGAATTCAAGATTCAACTTCTTTCCTCCATGTCCAAGGCCAGACAAGGTTA 658
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATGCTATAATGAATTCAAGATTCAACTTCTTTCCTCCATGTCCAAGGCCAGACAAGGTTA 658
Query 659 TTGGGATTAAACCGCATGCTGATGGTTCAGCTATCACTCTTCTCTTACCCGACAAAGATG 718
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 659 TTGGGATTAAACCGCACGCTGATGGCTCGGCTATCACTCTTCTCTTACCCGACAAAGATG 718
Query 719 TCGAAGGGCTTCAGTTTCTTAAAGATGGGAAGTGGTATAAAGCTCCAATAGTTCCTGATA 778
||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 719 TCGAAGGACTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTCCAATAGTCCCTGATA 778
Query 779 CAATTCTTATCACTTTAGGTGATCAAATGGAGATAATGAGTAATGGGATATATAAGAGCC 838
|||||||||||| | |||| ||||| |||||||||||||||||||||||||| ||||| |
Sbjct 779 CAATTCTTATCAATCTAGGAGATCAGATGGAGATAATGAGTAATGGGATATACAAGAGTC 838
Query 839 CGGTTCATCGAGTGGTGACCAACAGAGAGAAGGAAAGGATATCTGTGGCAACGTTTTGTG 898
|||||||| |||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 839 CGGTTCATAGAGTGGTGACGAACAGAGAAAAGGAAAGGATCTCTGTGGCAACGTTTTGTG 898
Query 899 TACCGGGTCTAGACAAAGAGATTCACCCTGCAGA-TGGGCTTGTGACTGAGGCAAGACCA 957
| ||||| | ||||||||||||||| ||||| || |||||||||| ||||||||||||||
Sbjct 899 TTCCGGGGCCAGACAAAGAGATTCAGCCTGC-GAATGGGCTTGTGTCTGAGGCAAGACCA 957
Query 958 AGATTGTATAAAACAGTTACCAAGTATGTGGATCTCCACTACAAGTACTATCAACAGGGT 1017
||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| |||
Sbjct 958 AGATTGTATAAAACAATTACCAAGTATGCGGAGCTCCACTACAAGTACTATCAACAAGGT 1017
Query 1018 CGAAGAACTATTGAAGCTGCATTAATCT 1045
||||||||||||||||||||||| ||||
Sbjct 1018 CGAAGAACTATTGAAGCTGCATTGATCT 1045
> Ahg488949 jgi|Araly1|488949|fgenesh2_kg.6__2083__AT5G20400.1
Length=1098
Score = 1323 bits (716), Expect = 0.0
Identities = 946/1057 (89%), Gaps = 16/1057 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCCGGTC-AAGGACTACC 59
||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 5 ATGGAAAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCCGG-CGAAGGACTGCC 63
Query 60 GGAGAGATATCTCCATGCACCAACCGGCGAAGGCGAAAG-TCAACCACTTAACGGTGCGG 118
||||||||||||||| ||||| ||||| || |||| ||| |||||| ||||||| |||||
Sbjct 64 GGAGAGATATCTCCACGCACCCACCGGAGACGGCG-AAGTTCAACCTCTTAACGCTGCGG 122
Query 119 TGCCGGAGATGGATATTCCGGCCATCGATCTCAGTCTTCTCTTCTCTTCCTCTGTAGACG 178
||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||
Sbjct 123 TGCCGGAGATGGATATTCCGGCCATCGATCTCAGTCTTCTCCTCTCTTCTTCTGAAGACG 182
Query 179 GTCAAGAAGAGATGAAG-AAACTTCACTCAGCACTCTCTACATGGGGCGTTGTTCAGGTG 237
||| ||||||| || || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 183 GTCGAGAAGAGTTG-AGTAAACTTCACTCGGCACTCTCTACATGGGGCGTTGTTCAGGTG 241
Query 238 ATGAATCATGGAATTACTGAAGCTTTTCTTGACAAGATTTACAAGCTAACCAAGCAGTTC 297
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| |||||
Sbjct 242 ATGAATCATGGAATTACAGAAGCGTTTCTTGACAAAATTTACAAGCTAACCAAGGAGTTC 301
Query 298 TTTGCGCTTCCGACCGAAGAGAAACACAAGTGTGCTAGAGAGACAGGTAATATCCAAGGA 357
|||||||||||||||||||||||||| ||||| || ||||||| |||| ||||||||||
Sbjct 302 TTTGCGCTTCCGACCGAAGAGAAACAGAAGTGCGCGAGAGAGATTGGTAGTATCCAAGGA 361
Query 358 TATGGTAACGATATGATTCTGTCTGATAATCAAGTTCTTGATTGGATCGACCGTTTGTTT 417
||||| ||||| |||||||| | ||| |||||||||||||||||||||||||||||| |
Sbjct 362 TATGGAAACGACATGATTCTTTGGGATGATCAAGTTCTTGATTGGATCGACCGTTTGTAT 421
Query 418 CTCACTACTTACCCTGAAGATAAGCGTCAACTTAAATTCTGGCCTCAAGTCCCTGTCGGA 477
| ||||| |||||||||||| || | |||||||| ||||||||||||||||| |||||
Sbjct 422 ATTACTACATACCCTGAAGATCAGAGACAACTTAAGTTCTGGCCTCAAGTCCCACTCGGA 481
Query 478 TTCAGCGAGACGTTAGATGAATACACAATGAAGCAACGGGTATTGATTGAGAAATTCTTT 537
||||| || || ||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 482 TTCAGGGAAACTTTACATGAATACACAATGAAGCAACGGATAGTGATTGAGAAATTCTTT 541
Query 538 AAGGCTATGGCTAGATCATTGGAATTGGAAGAGAATTGTTTTCTAGAAATGTATGGAGAA 597
|| || ||||||||||| |||||||||||||||||| |||||||||| |||||||| |||
Sbjct 542 AAAGCCATGGCTAGATCTTTGGAATTGGAAGAGAATAGTTTTCTAGACATGTATGGGGAA 601
Query 598 AATGCTG-TAATGAATTCAAGATTCAACTTCTTTCCTCCATGTCC-AAGGCCAGACAAGG 655
| |||| || || || ||||| ||||| | | |||||||||||| ||| || |||||||
Sbjct 602 AGTGCTACTA-TGGATACAAGACTCAACATGTATCCTCCATGTCCGAAG-CCGGACAAGG 659
Query 656 TTATTGGGATTAAACCGCATGCTGATGGTTCAGCTATCACTCTTCTCTTACCCGACAAAG 715
|||||||| |||||||||| |||||||| || ||| ||||||||||||||||||||||||
Sbjct 660 TTATTGGGGTTAAACCGCACGCTGATGGCTCGGCTTTCACTCTTCTCTTACCCGACAAAG 719
Query 716 ATGTCGAAGGGCTTCAGTTTCTTAAAGATGGGAAGTGGTATAAAGCTCCAATAGTTCCTG 775
|||| |||||||||||||| || ||||||||||| |||||||||||||| ||||| ||||
Sbjct 720 ATGTGGAAGGGCTTCAGTTCCTCAAAGATGGGAAATGGTATAAAGCTCCTATAGTCCCTG 779
Query 776 ATACAATTCTT-ATCACT-TTAGGTGATCAAATGGAGATAATGAGTAATGGGATATATAA 833
|||||||| || |||| | || ||||||||||||||||||||||| ||||||||||| ||
Sbjct 780 ATACAATT-TTGATCAATGTT-GGTGATCAAATGGAGATAATGAGCAATGGGATATACAA 837
Query 834 GAGCCCGGTTCATCGAGTGGTGACCAACAGAGAGAAGGAAAGGATATCTGTGGCAACGTT 893
||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 838 GAGCCCGGTTCATAGAGTGGTGACTAACAGAGAAAAGGAAAGGATATCTGTGGCAACGTT 897
Query 894 TTGTGTACCGGGT-CTAGACAAAGAGATTCACCCTGCAGATGGGCTTGTGACTGAGGCAA 952
||| | || ||| | ||||||||||||||| |||| |||| ||||||| |||||||||
Sbjct 898 TTGCATTCCAGGTGC-AGACAAAGAGATTCAGCCTGTGGATGAGCTTGTGTCTGAGGCAA 956
Query 953 GACCAAGATTGTATAAAACAGTTACCAAGTATGTGGATCTCCACTACAAGTACTATCAAC 1012
|||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||||||
Sbjct 957 GACCAAGATTGTATAAAACAGTTAAGAAGTATGTGGAGCTCTACTTCAAGTACTATCAAC 1016
Query 1013 AGGGTCGAAGAACTATTGAAGCTGCATTAATCTGATT 1049
|||||||| || |||||||||||||||| ||||||||
Sbjct 1017 AGGGTCGACGACCTATTGAAGCTGCATTGATCTGATT 1053
> Ahg917070 jgi|Araly1|917070|Al_scaffold_0008_1821
Length=993
Score = 573 bits (310), Expect = 9e-163
Identities = 555/670 (83%), Gaps = 29/670 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCCGGTCAAGGACTACCG 60
||||| ||||||||||||||||||||||||||| || |||||||||| || |||||||
Sbjct 1 ATGGAAAAGCCAAAGTTCAAGACTGTCCAAGAGCTGCTTGCAGCCGGAGAAAAACTACCG 60
Query 61 GAGAGATATCTCCATGCA--CCAACCGGCGAAGGCGAA--AG-TCAACCACTT-AACGGT 114
|| ||||| || | |||| ||||| ||||| || ||| | |||||| || |||| |
Sbjct 61 GAAAGATACCT-C-TGCACCCCAACAGGCGACGGAGAAGGTGATCAACC-TTTCAACGTT 117
Query 115 GCGGTGCCGGAGATGGATATTCCGGCCATCGATCTCAGTCTTCTCTTCTCTTCCTCTGTA 174
|| ||||||| ||||| ||| || ||||||||| ||||||||| ||||||| |||| |
Sbjct 118 TCGATGCCGGAAATGGAAATTATGGTCATCGATCTTAGTCTTCTCCTCTCTTCTTCTG-A 176
Query 175 -GACGGTCAAGAAGAGATGAAG-AAACTTCACTCAGC-ACTCTCTACATGGGGCGTTGTT 231
||||||| ||||||| || || |||||||||||||| | ||||||||||||||||||||
Sbjct 177 TGACGGTCGAGAAGAGTTG-AGTAAACTTCACTCAGCGA-TCTCTACATGGGGCGTTGTT 234
Query 232 CAGGTGATGAATCATGGAATTACTGAAGCTTTTCTTGACAAGATT-TACAAGCTAACCAA 290
||||||||||||||||||||| | ||||| ||||| ||||||||| | | ||||||| |
Sbjct 235 CAGGTGATGAATCATGGAATTTCAGAAGCCTTTCTCGACAAGATTCT-CGAGCTAACGAG 293
Query 291 GCAGTTCTTTGCGCTTCCGACCGAAGAGAAACACAAGTGTGCTAGAGAGAC-AGGTAATA 349
||||||||||| ||||||||||||||||||||| |||| || ||||||| || || |
Sbjct 294 GCAGTTCTTTGTGCTTCCGACCGAAGAGAAACATAAGTACGCAAGAGAGATTAG-TAGTT 352
Query 350 TCCAAGGATATGGTAACGATATGATTCTGTCTGATAATCAAGTTCTTGATTGGATCGACC 409
| ||||||| ||| ||||| ||||||||||||||| ||||||||||||| ||| ||||||
Sbjct 353 TTCAAGGATTTGGAAACGACATGATTCTGTCTGATGATCAAGTTCTTGACTGGGTCGACC 412
Query 410 GTTTGTTTCTCACTACTTACCCTGAAGAT-AAGCGTCAACTTAAATTCTGGCCTCAAGTC 468
| |||| |||| |||||| ||||||||| || || || ||||| ||||||||| || ||
Sbjct 413 GCTTGTACCTCATTACTTATCCTGAAGATCAA-CGACAGCTTAAGTTCTGGCCTAAAATC 471
Query 469 CCT-GTCGGATTCAGCGAGACGTTAGATGAATACACAATGAAGCAACGGGTATTGATTGA 527
|| | ||||||||| || || ||| ||||||||||||||||||||| | || || ||||
Sbjct 472 CCAAG-CGGATTCAGGGAAACTTTACATGAATACACAATGAAGCAACAGCTAGTGGTTGA 530
Query 528 GAAATTCTTTAAGGCTATG-GCTAGATCATTGGAATTGGAAGAGAATTGTTTTCTAGAAA 586
||||||||| ||||| || |||||||| |||| |||||||| ||||| |||||||| |
Sbjct 531 GAAATTCTTCAAGGC-ATTAGCTAGATCGTTGGGGTTGGAAGATAATTGCTTTCTAGAGA 589
Query 587 TGTATGGAGAAAATGCT--GTAATGAATTCAAGATTCAACTTCTTTCCTCCATGTCCAAG 644
|| |||| ||||||||| || || | ||||||||||| | | |||||||||||| ||
Sbjct 590 TGCATGGTGAAAATGCTACGT--TGGAGACAAGATTCAACATGTATCCTCCATGTCCGAG 647
Query 645 GCCAGACAAG 654
||| ||||||
Sbjct 648 GCCGGACAAG 657
> Ahg941606 jgi|Araly1|941606|scaffold_602150.1
Length=493
Score = 313 bits (169), Expect = 2e-84
Identities = 253/292 (87%), Gaps = 11/292 (4%)
Strand=Plus/Plus
Query 527 AGAAATTCTTTAAGGCTATGGCTAGATCATTGGAATTGGAAGAGAATTGTTTTCTAGAAA 586
||||| |||| || || ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 4 AGAAAGTCTTAAAAGCAATGGCTAGATCTTTGGAATTGGAAGAGAATTGTTTTCTAGACA 63
Query 587 TGTATGGAGAAAATGCTGTAATGAATTCAAGATTCAACTTCTTTCCTCCATGTCC-AAGG 645
||||||||||||||||| | ||| || ||||||||||| | | |||||||||||| |||
Sbjct 64 TGTATGGAGAAAATGCTATGATGGATACAAGATTCAACATGTATCCTCCATGTCCGAAG- 122
Query 646 CCAGACAAGGTTATTGG-GATTAAACCGCATGCTGATG-GTTCAGCTATCACTCTTCTCT 703
|| ||||||||||| || | ||||||||||||||||| || | ||| ||||||||||||
Sbjct 123 CCGGACAAGGTTATCGGTG-TTAAACCGCATGCTGATAAGT-CGGCTTTCACTCTTCTCT 180
Query 704 TACCCGACAAAGATGTCGAAGGGCTTCAGTTTCTTAAAGATGGGAAGTGGTATAAAGCTC 763
| ||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 181 TGCCCGACAAAAATGTCGAAGGGCTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTC 240
Query 764 CAATAGT-TC--CTGATACAATTCTTATCACT-TTAGGTGATCAAATGGAGA 811
|||| || || | ||||||||||| |||| | || || ||||| |||||||
Sbjct 241 CAATTGTCTCTGCAGATACAATTCTGATCAATGTT-GGAGATCAGATGGAGA 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5