BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49470.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474085 jgi|Araly1|474085|fgenesh2_kg.1__4039__AT1G49470.1 1550 0.0
> Ahg474085 jgi|Araly1|474085|fgenesh2_kg.1__4039__AT1G49470.1
Length=1063
Score = 1550 bits (839), Expect = 0.0
Identities = 939/987 (95%), Gaps = 8/987 (1%)
Strand=Plus/Plus
Query 5 CCACAATTAACAGA---TTTATTGTTTTTGGAAATAATCAAAACTT--AAAAACTATCAG 59
|||||||||||||| ||| || |||||||||| |||||||||| |||||| || ||
Sbjct 1 CCACAATTAACAGATTTTTTTTTTTTTTTGGAAACCATCAAAACTTAAAAAAAC-ATTAG 59
Query 60 AATGGGAACGTTCTTAGGACACTTTGTGCCTGGTCTCTCACTTGCTCTTCTTGGTCTTTG 119
||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 60 AATGGGAACGTTCCTAGGACATTTTGTGCCCGGTCTCTCACTTGCTCTTCTTGGTCTTTG 119
Query 120 GCATCTCTTCAACACCATAAGATCTTACTGTCTTAAAGGCCCTGAAGCTTTCTCTGCAAA 179
|||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |
Sbjct 120 GCATCTCTTCAACACCATAAGATCTTACTGTCTTCAAGGCCCTCAAACTTTCTCTGCACA 179
Query 180 ATTCTGGTTCCCTTTCCCTAAACTCAAACATCTTGAGCTTATCTTGATTCTCTTCTTCTC 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 ATTCTGGTTCCCTTTCCCTAAACTCAAACATCTCGAGCTTATCTTGATTCTCTTCTTCTC 239
Query 240 CTTCCTCTCCATCACTCTCCTCACCCTAGATTTCCCTAATTTCAACTTCTCCTCTCTCAA 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 240 CTTCCTCTCCATCACTCTCCTAACCCTAGATTTCCCTAATTTCAACTTCTCCTCTTTCAA 299
Query 300 ACCAGACAACCTAGAACATGCTTCCATGTTCCTCCACCTCATTATCTTTGCGTGTTTCGC 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 ACCAGACAACCTAGAACATGCTTCCATGTTCCTCCACCTCATTATCTTTTCGTGTTTCGC 359
Query 360 TCTCTTCTGCGAGCTAACCCTTTGCTCAGATCTCTTCTCCGGTCTAATCGGAGTTCTTTC 419
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 360 TCTCTTCTGCGAGCTAACCCTGTGCTCAGATCTCTTCTCCGGTCTAATCGGAGTCCTCTC 419
Query 420 TGCCTCTGTCTTCGCTCAAGAACTCTTCCTTCTTCATTTTCATTCCACTGATCATTCAGG 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 TGCCTCTGTCTTCGCTCAAGAACTCTTCCTTCTTCATTTTCACTCCACTGATCATTCAGG 479
Query 480 TCTTGAAGGTCACTACCATTTCCTTCTCCAACTCATTGCTTTCGTCTCCTTCTCCTCGGC 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTTGAAGGTCACTACCACTTCCTTCTCCAACTCATTGCTTTCGTCTCCTTCTCCTCGGC 539
Query 540 GCTAGCTTCTGCTTCGTTCCCTAAATCCTTCTCTGCGGCTCTATTCCTCCCGATATCGGT 599
|||||||||||||| |||||||||||||||||||||||| || |||||||||| |||||
Sbjct 540 TCTAGCTTCTGCTTCTTTCCCTAAATCCTTCTCTGCGGCTATAGTCCTCCCGATCTCGGT 599
Query 600 TATGTTTCAAGGATGCTGGTTCTTGAACATGGGGTTCATGCTTTGGATCCCAGAGTATGT 659
|||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 600 TATGTTTCAAGGATGCTGGTTCTTAAACATGGGCTTCATGCTTTGGGTCCCAGAGTATGT 659
Query 660 TCCTAGAGGTTGCGTGAGTAACATGTCAACATCTACAGACAATAATAGAAGGAGTGTT-T 718
||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 660 TCCAAGAGGTTGCGTGAGTAACATGTCAACATCTACAGACAATAACAGAAGAAGTGTTGT 719
Query 719 ATCATAGTGGTGCGGTGGCTTGTGAGTCCCCTGGTGCTGAGATTAGGGCAAAAGCATTGG 778
|||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 720 -TCATAGTGGTGCGGTGGCTTGTGATTCCGCTGGTGCTGAGGTTAGGGCAAAAGCATTGG 778
Query 779 CGAATCTGCAGTTTAGTTGGATGTTGTCTGCTATACTTATCATTACATGTGCCTTGTGCC 838
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 779 CGAATCTGCAGTTTAGTTGGATGTTGTCTGCTATACTGATAATTACATGTGCCTTGTGCC 838
Query 839 TCAAGTATTCCGGTAAAGTTGTGTTGCCTAAGATTAGGTCATCGTTGGAGTACGAGCGTC 898
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 839 TCAAGTTTTCCGGTAAAGTTGTGTTGCCTAAGATTAGGTCGTCGTTGGAGTACGAGCGAC 898
Query 899 TTTGCCGGCAAGGAAGTGATCGTTCTGCAACCGTAACGGTGGAAGCACCGGCCAGTTCCG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTTGCCGGCAAGGAAGTGATCGTTCTGCAACCGTAACGGTGGAAGCACCGGCCAGTTCCG 958
Query 959 ATCAACAATAGATTTTCCTTACTTTAA 985
|||||||||||||||||||||||||||
Sbjct 959 ATCAACAATAGATTTTCCTTACTTTAA 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5