BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49630.1
Length=3582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923384 jgi|Araly1|923384|scaffold_104665.1 5155 0.0
Ahg479430 jgi|Araly1|479430|fgenesh2_kg.3__2131__AT3G19170.1 3531 0.0
> Ahg923384 jgi|Araly1|923384|scaffold_104665.1
Length=3272
Score = 5155 bits (2791), Expect = 0.0
Identities = 3114/3270 (95%), Gaps = 22/3270 (1%)
Strand=Plus/Plus
Query 45 CATGCTCCGGTCATTAACTTGTTCCTCGA-CCATTACTTCGACCTCTCTCTTCTTCCGC- 102
||||||||||||| ||||||||||||| | || || |||||||||||||||||||||||
Sbjct 20 CATGCTCCGGTCAATAACTTGTTCCTC-ATCCCTTGCTTCGACCTCTCTCTTCTTCCGCT 78
Query 103 TCTTTCCGCCAGCT-CCCTCGCTCTTACTTGTCTCCCTCATCGTCAACGACCGTCGTCGG 161
||||| |||||| | ||||||||||||||| || || |||||||| |||||| | |
Sbjct 79 TCTTT-CGCCAG-TCCCCTCGCTCTTACTTTTCGCCGTCATCGTCTTCGACCG-C--C-- 131
Query 162 TGCCTCCGGCCGCAACATTCGCCGGCTTTCTACTCTAGAAGCTGCTGGGAGACGGCTATT 221
| | ||||||||||||||||||||||||||||| |||||||||||| || || | ||
Sbjct 132 -G--T-CGGCCGCAACATTCGCCGGCTTTCTACTCCAGAAGCTGCTGGAAGTCGTTTCTT 187
Query 222 TCTACGACGAGGCTTGAAACTACTCTCCGCCGCGAGTCGTGGTCTCAATGGACAGTTCTC 281
||||| || | ||| ||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 188 TCTACCCCGTGACTTTAAACTGCGCTCCGGTGCGAGTCGTGGTCTCAATGGACAGTTCTC 247
Query 282 TCGCTTATCTATTCGCGCCGTCGCTACACAATCCGCACCTTCTTCTTA-TCCCGGTCAAG 340
||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 248 TCGCTTATCCATTCGCGCCGTCGCTACACAATCCGCACCTTCTTC-AATTCCCGGTCAAG 306
Query 341 ATGAGGCTGAGAAGCTTGGATTTGAGAAAGTCTCTGAAGAGTTTATCTCAGAGTGTAAAT 400
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 ATGAAGCTGAGAAGCTTGGATTTGAGAAAGTCTCTGAAGAGTTTATCTCAGAGTGTAAAT 366
Query 401 CTAAGGCTGTTCTCTTCAAACACAAGAAAACTGGTTGCGAGGTGATGTCTGTTTCTAACG 460
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||
Sbjct 367 CTAAGGCTGTTCTCTTCAGACACAAGAAAACCGGTTGCGAGGTGATGTCTGTTTCAAACG 426
Query 461 ATGATGAGAACAAGGTGTTTGGCATTGTTTTCAGGACTCCTCCGAAGGATTCCACTGGCA 520
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 427 ATGATGAGAACAAGGTGTTTGGCATTGTTTTCAGGACTCCTCCGAAAGATTCCACTGGCA 486
Query 521 TTCCTCACATACTGGAACATAGCGTATTATGTGGGTCAAGAAAGTACCCGATGAAAGAAC 580
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 487 TTCCTCACATACTGGAACATAGCGTATTATGTGGGTCAAGAAAGTACCCGCTGAAGGAAC 546
Query 581 CATTTGTCGAATTATTAAAGGGAAGTTTGCATACTTTCCTAAACGCATTCACATATCCTG 640
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 547 CATTTGTCGAATTATTAAAGGGAAGTTTGCATACTTTCCTTAATGCATTCACATATCCTG 606
Query 641 ATAGGACTTGTTACCCAGTTGCTTCCACAAATAAAAAGGATTTCTACAATCTTGTCGATG 700
|||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 607 ATAGGACTTGCTACCCAGTTGCTTCCACAAATACAAAGGATTTCTACAACCTTGTCGATG 666
Query 701 TATACTTGGACGCTGTATTCTTCCCCAAGTGTGTGGATGATGTTCACACTTTTCAGCAGG 760
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 667 TATACTTGGATGCTGTGTTCTTCCCCAAGTGTGTGGATGACGTTCACACTTTTCAGCAGG 726
Query 761 AGGGTTGGCATTATGAGCTTAACGATCCTTCAGAGGACATATCTTACAAAGGCGTTGTTT 820
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 727 AGGGTTGGCACTATGAGCTTAACGATCCTTCAGAAGACATATCTTACAAAGGCGTTGTTT 786
Query 821 TTAATGAGATGAAAGGTGTCTATTCACAGCCTGATAATATACTAGGGCGGGTTACTCAAC 880
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 787 TTAATGAGATGAAAGGTGTCTATTCACAACCTGATAATATACTAGGGCGGATTACTCAAC 846
Query 881 AGGCATTATGTCCAGAAAATACATACGGTGTTGACAGTGGAGGTGATCCAAAAGATATCC 940
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AGGCCTTATGCCCGGAAAATACATACGGTGTTGACAGTGGAGGTGATCCAAAAGATATCC 906
Query 941 CCAAGCTTACGTTCGAGAAATTTAAGGAGTTCCACCGTCAGTATTATCACCCTAGCAATG 1000
| || |||||||| ||| |||||||||||||||||||||| ||||||||||| | |||||
Sbjct 907 CTAATCTTACGTTTGAGGAATTTAAGGAGTTCCACCGTCAATATTATCACCCAAACAATG 966
Query 1001 CCAGGATATGGTTCTATGGAGATGACGATCCAGTTCACCGCCTTC-GCGTCTTGAGTGAA 1059
||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||
Sbjct 967 CCAGGATATGGTTCTATGGAGATGATGATCCAGTTCACCGCC-TCTGCGTCTTGAGTGAA 1025
Query 1060 TACTTGGACATGTTTGATGCAAGTCCAGCTCGAGATAGTTCAAAGGTTGAACCACAAAAG 1119
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1026 TACTTGAACATGTTTGATGCAAGTCCAGCTCGTGATAGTTCAAAGGTTGAACCACAAAAG 1085
Query 1120 CTTTTCTCTAGACCTCGTAGGATTGTTGAAAAATACCCTGCTGGTGAAGATGGTGACCTT 1179
|| |||||| | ||||| || |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1086 CTATTCTCTGGGCCTCGCAGAATTGTTGAAAAATATCCTGCTGGTGAAGATGGCGACCTT 1145
Query 1180 AAGAAGAAGCATATGGTGTGCCTTAACTGGCTTCTCTCTGACAAGCCACTGGACTTACAA 1239
|||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1146 AAGAAGAAACGTATGGTGTGCCTTAACTGGCTGCTCTCTGACAAGCCACTGGACTTGCAA 1205
Query 1240 ACTCAACTCGCACTTGGGTTTTTGGATCATCTAATGCTTGGGACTCCTGCCTCCCCATTG 1299
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1206 ACTCAACTCGCGCTTGGGTTTTTGGATCATCTTATGCTTGGGACTCCTGCTTCCCCATTG 1265
Query 1300 AGAAAAATCTTATTGGAAAGCGGTTTAGGAGAAGCTCTTGTTAATAGTGGGATGGAAGAT 1359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1266 AGAAAAATCTTATTGGAAAGCGGATTAGGAGAAGCTCTTGTTAATAGTGGGATGGAAGAT 1325
Query 1360 GAACTTCTCCAGCCCCAATTCAGTATAGGTTTGAAAGGTGTTTCCGATGATAATGTCCAA 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 GAACTTCTCCAGCCCCAATTCAGTATAGGTTTGAAAGGTGTTTCCGATGATAATGTCCAA 1385
Query 1420 AAAGTTGAAGAGTTGGTCATGAATACTCTGAGAAAGTTGGCAGATGAGGGGTTTGACACT 1479
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1386 AAGGTTGAAGACTTGGTCATGAATACTCTGAGAAACTTGGCAGATGAGGGGTTTGACACT 1445
Query 1480 GATGCTGTTGAAGCATCCATGAATACCATTGAGTTTTCTCTGAGAGAAAACAATACAGGG 1539
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 GATGCTGTTGAGGCATCTATGAATACCATTGAGTTTTCTCTGAGAGAAAACAATACAGGG 1505
Query 1540 TCGTCCCCTCGTGGTTTATCACTTATGCTTCAATCAATTGCGAAATGGATATACGACATG 1599
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TCTTTCCCTCGTGGTTTATCACTTATGCTTCAATCAATTGCGAAATGGATATACGACATG 1565
Query 1600 GATCCTTTTGAGCCATTAAAGTATGAGGAACCATTGAAGTCCCTGAAAGCTAGAATAGCT 1659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1566 GATCCTTTTGAGCCATTAAAGTATGAGGAATCATTGAAGTCCCTGAAAGCTAGAATAGCT 1625
Query 1660 GAGAAAGGATCCAAGTCTGTCTTTTCTCCGCTGATAGAGGAGTATATTTTGAACAACCCT 1719
||||||||||| ||| |||||||||| || ||||||||||||| ||||||||||||||||
Sbjct 1626 GAGAAAGGATCTAAGGCTGTCTTTTCCCCTCTGATAGAGGAGTTTATTTTGAACAACCCT 1685
Query 1720 CATTGTGTTACTATAGAGATGCAGCCTGATCCAGAAAAAGCTTCTCTAGAGGAAGCGGAG 1779
|||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1686 CATTGTGTTACTATCGAGATGCAGCCTGATCCAGAGAAAGCTTCTCAAGAGGAAGCGGAG 1745
Query 1780 GAGAAAAGTATTCTAGAAAAAGTTAAAGCAAGTATGACAGAAGAGGATCTTACAGAACTA 1839
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1746 GAGAAAATTATTCTAGAAAAAGTTAAAGCAAGTATGACAGAAGAGGATCTTGCAGAACTA 1805
Query 1840 GCGCGTGCCACAGAGGAGTTGAGATTGAAGCAAGAGACTCCTGACCCTCCTGACGCACTG 1899
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1806 GCGCGTGCCACAGAGGAGTTGAAATTGAAGCAAGAGACTCCTGACCCTCCTGAAGCACTG 1865
Query 1900 AAATGCGTTCCAAGTTTAAATTTGAGTGACATTCCAAAAGAACCTATATATGTTCCCACT 1959
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1866 AAATGCGTTCCAAGTTTAAACTTGAGTGACATTCCAAAAGAACCTATATATGTTCCCACT 1925
Query 1960 GAGGTTGGAGATATTAATGGCGTGAAGGTGTTGCGGAATGATCTCTTTACAAATAATATA 2019
||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 1926 GAGGTTGGAGATATTAATGGCGTGAAGGTTTTGCGGCATGATCTCTTTACAAATGATATA 1985
Query 2020 CTCTACACTGAAGTAGTCTTTGATATGGGCTCAGTAAAGCATGAGCTTCTTCAACTGATA 2079
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1986 CTCTACACTGAAGTAGTCTTTGATATGGGCTCACTAAAACATGAGCTTCTTCAACTGATA 2045
Query 2080 CCCCTCTTCTGTCAATCATTACTAGAGATGGGCACGCAAGATTTGACTTTTGTACAACTT 2139
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2046 CCTCTCTTCTGTCAATCATTACTAGAGATGGGCACGCAAGATTTGACTTTTGTACAACTT 2105
Query 2140 AATCAGTTAATTGGAAGAAAGACAGGAGGGATATCAGTTTATCCCCTTACATCCTCTGTG 2199
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2106 AATCAGTTAATTGGAAGAAAGACCGGAGGGATATCAGTTTATCCCCTTACATCCTCTGTG 2165
Query 2200 TATGGTAGGGATGATCCATGTAGCAAAATCATTGTGCGTGGAAAATCCATGGTTGGACGC 2259
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2166 TATGGTAGGGATGATCCATGTAGCAAAATTATTGTGCGTGGAAAATCCATGGTTGGACGC 2225
Query 2260 GCTGAAGACCTTTTCAATTTGATGAACTGTGTGCTGCAAGAGGTTCGATTTACCGATCAA 2319
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||
Sbjct 2226 GCTGAAGACCTTTTCAACCTGATGAACTGTGTGCTGCAAGAGGTTCGATTTACAGATAAA 2285
Query 2320 CAGCGGTTTAAACAATTCGTTTCTCAGAGTAGAGCACGAATGGAGAACCGATTGAGGGGA 2379
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2286 CAACGGTTTAAACAATTCGTCTCTCAGAGTAGAGCACGAATGGAGAACCGATTGAGGGGA 2345
Query 2380 AGTGGTCAAGGAATTGCTGCTGCGAGGATGGATGCAATGTTGAACGTTGCTGGATGGATG 2439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2346 AGTGGTCAAGGAATTGCTGCTGCGAGGATGGATGCAATGTTGAACGTTGCTGGATGGATG 2405
Query 2440 TCTGAACAGATGGGTGGTCTCAGTTACCTTGAATTTCTACACACTCTTGAACAGAAGGTG 2499
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2406 TCTGAACAGATGGGTGGTCTCAGTTACCTTGAATTTCTACACACCCTTGAACAGAAGGTG 2465
Query 2500 GATCAAGACTGGGAAGGAATTTCATCCTCACTTGAGGAAATCAGAAGATCTTTCCTTTCC 2559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2466 GATCAAGACTGGGAAGGAATTTCATCCTCACTTGAGGAAATCAGAAGATCTTTCCTTTCC 2525
Query 2560 AGGAATGGTTGCATAGTTAATATGACTGCTGATGGGAAGTCCCTCACAAACACGGAAAAA 2619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2526 AGGAATGGTTGCATAGTTAATATGACTGCTGATGGGAAGTCCCTCACAAACACGGAAAAA 2585
Query 2620 TATGTTGGAAAATTTCTTGATTTACTCCCTGAAAATCCGTCTGGTGAACTCGTCACTTGG 2679
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 2586 TATGTTGGAAAATTTCTTGATTTACTCCCTGAAAATCCATCTGGTGGACTCGTCACTTGG 2645
Query 2680 GATGCTCGACTTCCTTTGAGAAATGAAGCTATAGTAATACCAACCCAGGTGAACTATGTG 2739
||||| ||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 2646 GATGCACGACTTCCTTTGAGAAATGAAGCAATTGTGATACCAACCCAGGTGAACTATGTT 2705
Query 2740 GGAAAAGCGGGAAATATATACAGCAGTGGCTACAAACTTGATGGGAGTTCATATGTTATA 2799
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 2706 GGAAAAGCGGGAAATATATACAGCAGTGGCTACGAGCTTGATGGAAGTTCATATGTTATA 2765
Query 2800 TCAAAGCATATTAGTAACACATGGTTATGGGATCGTGTTCGTGTAAGTGGTGGTGCATAT 2859
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2766 TCAAAGCATATTAGTAACACATGGTTATGGGATCGTGTCCGTGTAAGTGGTGGTGCATAT 2825
Query 2860 GGAGGTTCCTGTGATTTTGATTCACATTCGGGAGTATTTTCGTTCTTATCTTACCGTGAT 2919
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2826 GGAGGTTTCTGTGATTTTGATTCACATTCGGGAGTATTTTCGTTCTTATCTTACCGTGAT 2885
Query 2920 CCCAACCTATTAAAGACTCTAGACATATATGATGGAACTGGGGATTTCTTACGTGGCCTC 2979
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2886 CCCAACCTATTAAAGACTCTGGACATATATGATGGAACTGGGGATTTCTTACGTGGCCTC 2945
Query 2980 GATGTCGATGAAGACACCCTTACCAAAGCAATTATTGGGACAATTGGCGATGTCGATTCA 3039
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2946 GATGTCGATGAAGACACCCTTACTAAAGCAATTATTGGGACAATTGGCGATGTTGATTCA 3005
Query 3040 TACCAACTCCCTGATGCCAAAGGTTATACCAGTTTGTTGAGGCATTTACTTAATGTAACC 3099
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3006 TACCAACTCCCTGATGCCAAAGGTTATAGCAGTTTGTTGAGGCATTTACTTAATGTAACC 3065
Query 3100 GACGAAGAGAGGCAAATAAGGCGTGAAGAGATATTATCTACAAGTTTGAAGGACTTCAAG 3159
|| ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 3066 GATGAAGAGAGGCAAATAAGACGTGAAGAGATACTATCAACAAGTTTGAAGGACTTCAAG 3125
Query 3160 GAATTCGCAGAGGCAATAGACTCTGTTAGTGATAAAGGCGTTGCAGTGGCCGTGGCATCA 3219
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 3126 GAATTCGCAGAGGCAATAGACTCAGTTAGAGATAAAGGCGTTGCAGTGGCAGTGGCATCA 3185
Query 3220 CAAGAAGACATTGATGCAGCAAACAGAGAACGCTCAAATTTTTTCGAGGTGAAGAAAGCA 3279
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 3186 CAAGAAGACATTGATGCAGCAAACAAAGAACGCTCAAACTTTTTCGAGGTGAAGAAAG-- 3243
Query 3280 GCTCTCTGAGTCTGAGACCCTCTTAGAAAG 3309
| ||||||||||||||||||||||| ||||
Sbjct 3244 G-TCTCTGAGTCTGAGACCCTCTTATAAAG 3272
> Ahg479430 jgi|Araly1|479430|fgenesh2_kg.3__2131__AT3G19170.1
Length=3523
Score = 3531 bits (1912), Expect = 0.0
Identities = 2860/3312 (86%), Gaps = 87/3312 (3%)
Strand=Plus/Plus
Query 14 CAGTCTTTGCCGGAGAAA-ATA-TTCCGGTAGCCATGCTCCGGTCATTAACTTG-TT--C 68
||||||| ||||| |||| ||| |||||||||| ||||||||| | || |||| || |
Sbjct 122 CAGTCTTCGCCGG-GAAATATATTTCCGGTAGCGATGCTCCGGACCGTATCTTGTTTAGC 180
Query 69 CTCGAC-CATTACTTCGACCTCTCTCTTCTTCCGC-TCTTTCCGCCAGCTCCCTCGCTCT 126
||| | || | ||| ||||||| ||||| ||| ||||| || ||| |||||||||||
Sbjct 181 TTCG-CGCA--GC-TCGGCCTCTCTATTCTTTCGCTTCTTT-CGTCAGTTCCCTCGCTCT 235
Query 127 TACTTGTCTCCCTCATCGTCAACGACCG-TCGTCGGTG-CCTCCGGCCGCAA-CATTCGC 183
||| |||||| ||||||| ||| ||| || || || || || | ||||| | |||||
Sbjct 236 TACATGTCTCTAACATCGTCGACGGCCGCTC-TCCATGTCC-CCAGTCGCAATC-TTCGC 292
Query 184 CGGCTTT-CTACT-CTAGAAGCTGCTGGGAGACGGCTATTTCTACGACGAGGCTTGA-AA 240
||| ||| || || || || ||| || ||||| || ||||| || ||||| |||| |
Sbjct 293 CGGATTTCCT-CTCCT-TCAGTTGCCGGAAGACGTCTCTTTCTCCGCCGAGGTTTGAGGA 350
Query 241 CTACTCTCCGCCGCGAG-TCGTGGTCTCAATGGACAGTTCTCTCGCTTATCTATTCGCGC 299
| | ||||||||| || |||| || ||||||| |||||||||||| | ||| |||||||
Sbjct 351 -TTCCCTCCGCCGC-AGTTCGTAGTGTCAATGGGCAGTTCTCTCGCCTCTCTGTTCGCGC 408
Query 300 CGTCGCTACACAATCCGCA-C-C-TTCTTCTTATCCCGGTCAAGATGAGGCTGAGAAGCT 356
|||||| |||||| ||||| | | || | | || |||||||||||||||||||||||
Sbjct 409 CGTCGCCACACAACCCGCACCACTTTATCCCGATGTAGGTCAAGATGAGGCTGAGAAGCT 468
Query 357 TGGATTTGAGAAAGTCTCTGAAGAGTTTATCTCAGAGTGTAAATCTAAGGCTG-TTCTCT 415
||||||||| ||||| || ||||| || ||||||||||||||||| ||||| | ||||||
Sbjct 469 TGGATTTGAAAAAGTGTCGGAAGAATTCATCTCAGAGTGTAAATCAAAGGC-GATTCTCT 527
Query 416 TCAAACACAAGAAAACTGGTTGCGAGGTGATGTCTGTTTCTAACGATGATGAGAACAAGG 475
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 528 TCAAACACAAGAAAACTGGTTGCGAGGTGATGTCTGTGTCAAACGAGGATGAGAACAAGG 587
Query 476 TGTTTGGCATTGTTTTCAGGACTCCTCCGAAGGATTCCACTGGCATTCCTCACATACTGG 535
| || ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 588 TCTTCGGCGTTGTTTTCAGGACTCCTCCGAAGGATTCCACTGGCATTCCGCACATACTGG 647
Query 536 AACATAGCGTAT-TATGTGGGTCAAGAAAGTACCCGATGAAAGAACCATTTGTCGAATTA 594
|||||||||| | ||||||||||||||||||||||| | ||||| |||||||| ||| ||
Sbjct 648 AACATAGCGT-TCTATGTGGGTCAAGAAAGTACCCGCTAAAAGAGCCATTTGTTGAACTA 706
Query 595 TTAAAGGGAAGTTTGCATACTTTCCTAAACGCATTCACATATCCTGATAGGACTTGTTAC 654
| |||||||||||||||||||| ||||| |||||||||||||| |||||||| || |||
Sbjct 707 CTCAAGGGAAGTTTGCATACTTTTCTAAATGCATTCACATATCCGGATAGGACCTGCTAC 766
Query 655 CCAGTTGCTTCCACAAATAAAAAGGATTTCTACAATCTTGTCGATGTATACTTGGACGCT 714
|||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||| |||
Sbjct 767 CCAGTTGCTTCCACCAATACAAAGGATTTTTACAATCTTGTCGATGTATATTTGGATGCT 826
Query 715 GTATTCTTCCCCAAGTGTGTGGATGATGTTCACACTTTTCAGCAGGAGGGTTGGCATTAT 774
|| ||||||||||||||||||||||| || ||||| |||||||| ||||| ||||| |||
Sbjct 827 GTCTTCTTCCCCAAGTGTGTGGATGACGTGCACACCTTTCAGCAAGAGGGCTGGCACTAT 886
Query 775 GAGCTTAACGATCCTTCAGAGGACATATCTTACAAAGGCGTTGTTTTTAATGAGATGAAA 834
|||||||| ||||| || || ||||||||||||||||| |||||||||||||||||||||
Sbjct 887 GAGCTTAATGATCCCTCTGAAGACATATCTTACAAAGGTGTTGTTTTTAATGAGATGAAA 946
Query 835 GGTGTCTATTCACAGCCTGATAATATACTAGGGCGGGTTACTCAACAGGCATTATG--TC 892
|||||||||||||||||||||||||| ||||||| || |||||||||| |||| ||
Sbjct 947 GGTGTCTATTCACAGCCTGATAATATTTTAGGGCGAATTGCTCAACAGGCCTTATTAATC 1006
Query 893 C-AGAAAATACATACGGTGTTGACAGTGGAGGTGATCCAAAAGATATCCCCAAGCTTACG 951
| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1007 CCAGAAAATACATATGGTGTTGACAGTGGAGGTGATCCAAAAGATATCCCTAAGCTGACA 1066
Query 952 TTCGAGAAATTTAAGGAGTTCCACCGTCAGTATTATCACCCTAGCAATGCCAGGATATGG 1011
|| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1067 TTTGAGGAATTCAAGGAGTTCCACCGTCAGTATTATCACCCAAGCAATGCCAGGATCTGG 1126
Query 1012 TTCTATGGAGATGACGATCCAGTTCACCGCCTTCGCGTCTTGAGTGAATACTTGGACATG 1071
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1127 TTCTATGGAGATGATGATCCCGTTCACCGCCTTCGTGTCTTAAGTGAATACTTGGACATG 1186
Query 1072 TTTGATGCAAGTCCAGCTCGAGATAGTTCAAAGGTTGAACCACAAAAGCTT-TTCTCT-A 1129
||||| ||||||||| ||| |||||||||||| || |||| |||||| || |||||| |
Sbjct 1187 TTTGAAGCAAGTCCATCTCCCGATAGTTCAAAGATTAAACCTCAAAAG-TTATTCTCTGA 1245
Query 1130 GACCTCGT-AGGATTG-TTGAAAAATACCCTGCTGGT-GAAGATGGTGACCTTAAGAAGA 1186
| ||| || || | || |||| ||||| ||||||||| || |||||||||||||| ||||
Sbjct 1246 G-CCT-GTCAG-ACTGGTTGAGAAATATCCTGCTGGTCGA-GATGGTGACCTTAAAAAGA 1301
Query 1187 AGCATATGGTGTGCCTTAACTGGCT-TCTCTCTGACAAGCCACT-GGACTTACAAACTCA 1244
|||| ||| |||| |||||||||| | | ||||| ||||| || |||||| ||||||||
Sbjct 1302 AGCACATGTTGTGTGTTAACTGGCTAT-TGTCTGAGAAGCC-CTTGGACTTGCAAACTCA 1359
Query 1245 ACTCGCACTTGGGTTTTTGGATCATCTAATGCTTGGGACTCCTGCCTCCCCATTGAGAAA 1304
||| |||||||| || ||||||||||| ||||| ||||||||||| || ||| | |||||
Sbjct 1360 ACTTGCACTTGGCTTCTTGGATCATCTTATGCTGGGGACTCCTGCTTCACCACTAAGAAA 1419
Query 1305 AATCTTATTGGAAAGCGGTTTAGGAGAAGCTCTTGTTAATAGTGGGATGGAAGATGAACT 1364
|||||||||||||||||||||||||||||||||||| | ||||||| || ||| |||||
Sbjct 1420 AATCTTATTGGAAAGCGGTTTAGGAGAAGCTCTTGTCAGTAGTGGGTTGTCAGACGAACT 1479
Query 1365 TCTC-CAGCCCCAATTCAGTATAGGTTTGAAAGGTGTTTCCGATGATAATGTCCAAAAAG 1423
|| |||||||| |||||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct 1480 -CTTGCAGCCCCAGTTCAGTATTGGTTTGAAAGGTGTGTCCGAAGATAATGTTCAAAAGG 1538
Query 1424 TTGAAGAGTTGGTCATGAATACTCTGAGAAAGTTGGCAGATGAGGGGTTTGACACTGATG 1483
||||||||||| ||||| ||||||||| |||||||||||| || |||||||||| |||||
Sbjct 1539 TTGAAGAGTTGATCATGGATACTCTGAAAAAGTTGGCAGAAGAAGGGTTTGACAATGATG 1598
Query 1484 CTGTTGAAGCATCCATGAATACCATTGAGTTTTCTCTGAGAGAAAACAATACAGGGTCGT 1543
|||| || |||||||||||||| ||||||||||||||||| |||||||| ||||| || |
Sbjct 1599 CTGTGGAGGCATCCATGAATACAATTGAGTTTTCTCTGAGGGAAAACAACACAGGATCTT 1658
Query 1544 CCCCTCGTGGTTTATCACTTATGCTTCAATCAATTGCGAAATGGATATACGACATGGATC 1603
|||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct 1659 TCCCTCGTGGTTTATCACTTATGCTCCAATCTATTGCAAAATGGATATACGATATGGATC 1718
Query 1604 CTTTTGAGCCATTAAAGTATGA-GGAACCATTGAAGTCCCTGAAAGCTAGAATAGCTGAG 1662
|||||||||||||||||||| | ||||||||||||| |||||||| | |||||||| |||
Sbjct 1719 CTTTTGAGCCATTAAAGTAT-ACGGAACCATTGAAGGCCCTGAAAACCAGAATAGCGGAG 1777
Query 1663 AAAGGATCCAAGTCTGTCTTTTCTCCGCTGATAGAGGAGTATATTTTGAACAACCCTCAT 1722
| ||||||||| | |||||||| || ||||||||| ||| ||| ||||||||| | |||
Sbjct 1778 GAGGGATCCAAGGCCGTCTTTTCCCCACTGATAGAGAAGTTTATCTTGAACAACTCGCAT 1837
Query 1723 TGTGTTACTATAGAGATGCAGCCTGATCCAGAAAAAGCTTCTCTAGAGGAAGCGGAGGAG 1782
||||||| |||||||||||||||||||| ||||||||| ||| |||||||| ||| |||
Sbjct 1838 CGTGTTACCATAGAGATGCAGCCTGATCCCGAAAAAGCTACTCAAGAGGAAGTGGAAGAG 1897
Query 1783 AAAAGTATTCTAGAAAAAGTTAAAGCAAG-TATGACAGAAGAGGATCTTACAGAACTAGC 1841
|||| ||| || |||||||| |||||| | |||||||||||| |||||| |||| |||||
Sbjct 1898 AAAAATATCCTGGAAAAAGTCAAAGCA-GCTATGACAGAAGAAGATCTTGCAGAGCTAGC 1956
Query 1842 GCGTGCCACAGAGGAGTTGAGATTGAAGCAAGAGACTCCTGACCCTCCTGACGCACTGAA 1901
||||| ||||||||| | | |||||| ||||| ||||||||||||||||| ||| |||
Sbjct 1957 ACGTGCTACAGAGGAGCTAAAATTGAAACAAGAAACTCCTGACCCTCCTGAAGCATTGAG 2016
Query 1902 ATGCGTTCCAAGTTTAAATTTGAGTGACATTCCAAAAGAACCTA-TATATGTTCCCACTG 1960
||| || |||||||| || ||| ||||||||||||||||||||| | ||||||||||| |
Sbjct 2017 ATGTGTCCCAAGTTTGAACTTGGGTGACATTCCAAAAGAACCTACT-TATGTTCCCACCG 2075
Query 1961 AGGTTGGAGATATTAATGGCGTGAAGGTGTTGCGGAATGATCTCTTT-ACAAATAATATA 2019
||||||||||||||||||| |||||||| |||||| |||| || ||| || ||| |||||
Sbjct 2076 AGGTTGGAGATATTAATGGTGTGAAGGTTTTGCGGCATGACCT-TTTCACCAATGATATA 2134
Query 2020 CTCTACACTGAAGTAGTCTTTGATATGGGCTCAGT-AAAGCATGAGCTTCTTCAACT-GA 2077
||||| ||||||||||||||||||| || || | ||| ||||||||||||| ||| |
Sbjct 2135 ATCTACGCTGAAGTAGTCTTTGATATTGGTTCCCTGAAA-CATGAGCTTCTTCCACTAG- 2192
Query 2078 TACCCCTCTTCTGTCAATCATTACTAGAGATGGGCACGCAAGATTTGACTTTTGTACAAC 2137
|||| || ||||||||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 2193 TACCACTTTTCTGTCAATCATTACTGGAGATGGGCACAAAAGATTTGACTTTTGTTCAAC 2252
Query 2138 TTAATCAGTTAATTGGAAG-AAAGACAGGAGGGATATCAGTTTATCCCCTTACATCCTCT 2196
|||||||||| |||||||| ||| || ||||||||||||||||||||||||||||| ||
Sbjct 2253 TTAATCAGTTGATTGGAAGGAAA-ACGGGAGGGATATCAGTTTATCCCCTTACATCATCA 2311
Query 2197 GTGTATGG-TAGGGATGATCCATGTAGCAAAATCATTGTGCGTGGAAAATCCATGGTTGG 2255
||| | || || |||||| ||||| |||||||| || | || ||||||||||||| |||
Sbjct 2312 GTG-AGGGGTAAGGATGAACCATGCAGCAAAATTATCATACGCGGAAAATCCATGGCTGG 2370
Query 2256 ACGCGCTGAAGACCTTTTCAATTTGATGAACTG-TGTGCTGCAAGAGGTTCGATTTACCG 2314
|| ||||| |||||||| || ||||||| || | || |||||||||||| |||||| |
Sbjct 2371 GCGTGCTGACGACCTTTTTAACCTGATGAATTGCT-TGTTGCAAGAGGTTCAATTTACAG 2429
Query 2315 ATCAACAGCGGTTTAAACAATTCGTTTCTCAGAGTAGAGCACGAATGGAGAACCGATTGA 2374
|||| ||| |||||||||| || || ||||| || |||||||| ||||||||||||||||
Sbjct 2430 ATCAGCAGAGGTTTAAACAGTTTGTCTCTCAAAGCAGAGCACGGATGGAGAACCGATTGA 2489
Query 2375 GGGGAAGTGGTCAAGGAATTGCTGCTGCGAGGATGGATGCAATGTTGAACGTTGCTGGAT 2434
||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||
Sbjct 2490 GGGGAAGTGGTCATGGAATTGCTGCGGCGAGAATGGATGCAATGTTGAACATTGCTGGAT 2549
Query 2435 GGATGTCTGAACAGATGGGTGGTCTCAGTTACCTTGAATTTCTACACACTCTTGAACAGA 2494
|||||||||||||||||||||||||||| || ||||||||| |||| ||||||||| |||
Sbjct 2550 GGATGTCTGAACAGATGGGTGGTCTCAGCTATCTTGAATTTTTACATACTCTTGAAAAGA 2609
Query 2495 AGGTGGATCAAGACTGGGAAGGAATTTCATCCTCACTTGAGGAAATCAGAAGATCTTTCC 2554
| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 2610 AAGTGGATGAAGACTGGGAAGGAATTTCATCCTCACTTGAGGAGATCAGAAGATCTCTCC 2669
Query 2555 TTTCCAGGAATGGTTGCATAGTTAATATGACTGCTGATGGGAAGTCCCTCACAAACA-CG 2613
|| |||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||
Sbjct 2670 TTGCCAGGAATGGTTGCATAGTTAACATGACTGCTGATGGGAAGTCTCTCACCAACGTCG 2729
Query 2614 GAAAAATATGTTG-GAAAATTTCTTGATTTACTCCCTGAAAATCCGTCTGGTGAACTCGT 2672
|||||| ||||| |||| ||||| |||||||||||||| || || || |||| || ||
Sbjct 2730 -AAAAATCTGTTGCGAAA-TTTCTAGATTTACTCCCTGAGAACCCCTCCGGTGGGCTGGT 2787
Query 2673 CACTTGGGATGCTCGACTTCCTTTGAGAAATGAAGCTATAGTAATACCAACCCAGGTGAA 2732
||||||||||| |||||||||| | ||||||||||| || || |||||||||||||| ||
Sbjct 2788 CACTTGGGATGGTCGACTTCCTCTCAGAAATGAAGCAATTGTGATACCAACCCAGGTAAA 2847
Query 2733 CTATGTGGGAAAAGCGGGAAATATATACAGCAGTGGCTACAAACTTGATGGGAGTTCATA 2792
|||||| ||||||||||| || |||||||||| || || | |||||||| ||| ||||
Sbjct 2848 CTATGTTGGAAAAGCGGGTAACATATACAGCACCGGGTATGAGCTTGATGGCAGTGCATA 2907
Query 2793 TGTTATATCAAAGCATATTAGTAACACATGGTTATGGGATCGTGTTCGTGTAAGTGGTGG 2852
|||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||
Sbjct 2908 TGTTATATCAAAGCATATAAGCAATACATGGTTATGGGATCGTGTTCGTGTAAGCGGTGG 2967
Query 2853 TGCATATGGAGGTTCCTGTGATTTTGATTCACATTCGGGAGTATTTTCGTT-CTTATCTT 2911
|||||||||||||| ||||||||| ||||| ||||| ||||||||||| || ||||||||
Sbjct 2968 TGCATATGGAGGTTTCTGTGATTTCGATTCGCATTCAGGAGTATTTTC-TTACTTATCTT 3026
Query 2912 ACCGTGATCCCAACCTATTAAAGACTCTAGACATATATGATGGAACTGGGGATTTCTTAC 2971
|||| ||||| ||| | || ||||| || |||||||||||||||||||| ||||||||||
Sbjct 3027 ACCGGGATCCAAACTTGTTGAAGACACTTGACATATATGATGGAACTGGAGATTTCTTAC 3086
Query 2972 GTGGCCTCGATGTCGATGAAGACACCCTTACCAAAGCAATTATTGGGACAATTGGCGATG 3031
||||||| ||||| ||| |||| || || || ||||| |||||||| || || || ||||
Sbjct 3087 GTGGCCTTGATGTGGATCAAGAAACACTCACTAAAGCTATTATTGGCACCATCGGTGATG 3146
Query 3032 TCGATTCATACCAACTCCCTGATGCCAAAGGTTATACCAGTTTGTTGAGGCATTTACTTA 3091
| |||||||||||| | ||||||||||||||||||| |||||||||||||||||||||
Sbjct 3147 TTGATTCATACCAATTACCTGATGCCAAAGGTTATAGCAGTTTGTTGAGGCATTTACTCG 3206
Query 3092 -ATGTAACCGACGAAGAGAGG-CAAATAAGGCGTGAAGAGATATTATCTACAAGTTTGAA 3149
| ||||| |||||||| | | |||| || ||||||||||||| || | |||||||||||
Sbjct 3207 GA-GTAACTGACGAAGA-ACGACAAAGAAAGCGTGAAGAGATACTAACAACAAGTTTGAA 3264
Query 3150 GGACTTCAAGGAATTCGCAGAGGCAATAGACT-CTGTTAGTGATAAAGGCGTTGCAGTGG 3208
|||||||||||| |||||||| |||||||| | | ||||| ||||| || ||||| ||||
Sbjct 3265 GGACTTCAAGGATTTCGCAGAAGCAATAGA-TGCGGTTAGAGATAATGGTGTTGCGGTGG 3323
Query 3209 CCGTGGCATCA-CAAGAAGACATTGATGCAGCAAACAGA-GAACGCTCAAATTTTTTCGA 3266
| |||||||| || |||||||||||||||||||||| | |||||||| || ||||||||
Sbjct 3324 CTGTGGCATCCGCA-GAAGACATTGATGCAGCAAACA-ATGAACGCTCCAACTTTTTCGA 3381
Query 3267 GGTGAAGAAAGC 3278
||||||||||||
Sbjct 3382 GGTGAAGAAAGC 3393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135294672015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5