BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G49670.2 Length=2833 Score E Sequences producing significant alignments: (Bits) Value Ahg337119 jgi|Araly1|337119|fgenesh1_pg.C_scaffold_1003684 1973 0.0 > Ahg337119 jgi|Araly1|337119|fgenesh1_pg.C_scaffold_1003684 Length=1905 Score = 1973 bits (1068), Expect = 0.0 Identities = 1200/1265 (95%), Gaps = 4/1265 (0%) Strand=Plus/Plus Query 88 ATGGAGATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGGTCGA 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGGTCGA 60 Query 148 GCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCGCTGATTTTTCGGAG 207 |||||||||||||||||||| || |||||||| ||||| || || | ||||||||||||| Sbjct 61 GCTCTCTGCTTAGCTCTTGCGGATAAAGGAGTGTTTGTTACGGTGGTTGATTTTTCGGAG 120 Query 208 GAGAAAGGACAAGAGACTACTTCGCTTGTTCGAGAAGCGAATGCCAAGTTTCAT-CAGGG 266 |||||||||||||||||||| |||||||||||| |||| |||||||| | |||| | ||| Sbjct 121 GAGAAAGGACAAGAGACTACCTCGCTTGTTCGAAAAGCAAATGCCAAATATCATCCCGGG 180 Query 267 CTTAAGCTTTCCTTCTGCTATCTTTGTGAAATGTGATGTGACTAATAGAGGAGATCTCCT 326 ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 181 -TTAAGCTCTCCTTCTGCTATCTTTGTGAAATGTGATGTCACTAATAGAGGAGATCTCGT 239 Query 327 CGCTGCTTTCGATAAGCATTTAGCCACATTTGGAACACTTGACATCTGTATCAACAATGC 386 ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 240 GGCTGCTTTCGAGAAGCACTTAGCCACATTTGGAACACTTGACATTTGTATCAACAATGC 299 Query 387 TGGGATTAGCACTCCTTTAAGATTTGATAAAGATGACACTGATGGATCTAAATCATGGAA 446 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGGGATTAGCACTCCTCTAAGATTTGATAAAGATGACACTGATGGATCTAAATCATGGAA 359 Query 447 ACACACCATTAATGTCGATCTGATTGCAGTAGTTGAAGGCACACAACTTGCGATCAAAGC 506 ||||||||||||||||||||| ||||||||| | |||||||||||||||| |||||||| Sbjct 360 ACACACCATTAATGTCGATCTCATTGCAGTAATCCAAGGCACACAACTTGCAATCAAAGC 419 Query 507 TATGAAAGCAAAACAAAAGCCTGGAGTTATCATTAACATGGGATCAGCTGCGGGTCTTTA 566 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TATGAAAGCCAAACAAAATCCTGGAGTTATCATTAACATGGGATCAGCTGCGGGTCTTTA 479 Query 567 TCCAATGCCCGTTGATCCTATCTATGCTGCCTCTAAAGCCGGTGTCGTATTATTCACTAG 626 |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 480 TCCAATGCCCATTGATCCTATCTACGCTGCCTCTAAAGCCGGTGTCGTATTATTCACTAG 539 Query 627 ATCATTAGCATATTACAGGCGCCAGGGGATTCGCATCAATGTGCTTTGCCCTGAATTTAT 686 ||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||| Sbjct 540 ATCATTAGCATATTACAGGCGTCAAGGGATCCGCATCAATGTACTTTGCCCTGAATTTAT 599 Query 687 CAAGACAGACTTAGCTGAAGCTATTGATGCTTCAATACTAGAGTCAATAGGCGGTTACAT 746 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 600 CAAGACAGACTTAGCTGAAGCTATTGATGCTTCAATACTTCAGTCAATAGGTGGTTACAT 659 Query 747 GTCTATGGACATGTTGATTAAAGGTGCTTTTGAGCTTATAACCGATGAGAAAAAGGCGGG 806 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 660 GTCTATGGACATGTTAATTAAAGGTGCTTTTGAGCTTATAACCGATGAGAAAAAGGCCGG 719 Query 807 GGCATGTCTATGGATTACCAAACGCAGGGGTTTGGAGTATTGGCCAACTCCAATGGAAGA 866 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 720 GGCATGTCTATGGATTACCAACCGCAGAGGTTTGGAGTATTGGCCAACTCCAATGGAAGA 779 Query 867 GACAAAGTACTTGGTGGGTTCAAGTTCCAGGAAAAGACCTTCTTTTAAAGTTTCTACAAA 926 |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | || Sbjct 780 GACAAAGTACTTGGTGGGTTCAAGTTCCAGAAAAAGACCTTCGTTTAAAGTATCTTCCAA 839 Query 927 AATAGAATTTCCTCAAAGCTTCGAGAAAATGATTGTACACACCTTGTCTCACAAATTCCG 986 ||| ||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 840 AATTGAACTTCCTCAAAGCTTCGAGAAAATAATTGTACACACCTTGTCTCATAAATTCCG 899 Query 987 CAGTGCTACCCGCATAGTCCGTGCACCACTACAATTACCCATTGGACCACACCAAGTTCT 1046 || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 900 CAACGCTACCCGCATAGTCCGTGCACCACTAAAATTACCCATTGGACCACACCAAGTTCT 959 Query 1047 CCTGAAAATCATCTATGCTGGTGTTAACGCAAGTGATGTAAACTTCAGCTCAGGTCGTTA 1106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 CCTGAAAATCATCTATGCTGGTGTTAACGCAAGTGATGTAAACTTCAGCTCAGGTCGTTA 1019 Query 1107 CTTTA-CTGGTGGCTCCCCGAAGCTTCCCTTTGATGCTGGATTTGAGGGAGTTGGACTAA 1165 ||||| | || ||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1020 CTTTAGC-GGCGGCTCACCGAAGCTTCCCTTTGATGCTGGGTTTGAGGGAGTTGGACTAA 1078 Query 1166 TTGCAGCAGTGGGAGAATCTGTTAAGAATTTGGAAGTTGGGACTCCAGCTGCTGTTATGA 1225 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 TAGCAGCAGTAGGAGAATCTGTTAAGAATTTGGAAGTTGGGACTCCAGCTGCTGTTATGA 1138 Query 1226 CGTTTGGAGCATATTCTGAATACATGATAGTATCTTCTAAGCATGTTCTTCCTGTTCCAA 1285 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1139 CATTTGGAGCATATTCTGAATACATGATAGTATCTTCTAAGCATGTGCTTCCTGTTCCGA 1198 Query 1286 GACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTG 1345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 GACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTG 1258 Query 1346 AAAAG 1350 ||||| Sbjct 1259 AAAAG 1263 Score = 1002 bits (542), Expect = 0.0 Identities = 612/643 (95%), Gaps = 15/643 (2%) Strand=Plus/Plus Query 1418 AGGCAGGACAAATGAAATCAGGTGAAACTGTACTTGTGACTGCTGCTGCAGGAGGGACTG 1477 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1262 AGGCAGGACAAATGAAATCAGGTGAAACAGTACTTGTGACTGCTGCTGCAGGAGGGACTG 1321 Query 1478 GACAATTT---G--C--AG----TC----CAGCTTGCAAAGTTATCAGGAAATAAAGTGA 1522 |||||||| | | || || ||||||||||||||| ||||||||||||||| Sbjct 1322 GACAATTTGCAGTCCAGAGATTCTCTATGCAGCTTGCAAAGTTAGCAGGAAATAAAGTGA 1381 Query 1523 TTGCTACTTGCGGGGGATCAGAGAAGGCCAAGCTATTGAAAGAGCTTGGGGTCGATCGAG 1582 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1382 TTGCTACTTGCGGGGGATCAGAGAAGGCCAAGCTATTGAAAGAGCTCGGGGTCGATCGAG 1441 Query 1583 TCATAGACTACAAATCCGAGAATATAAAGACGGTCTTGAAAAAGGAGTTTCCGAAGGGTG 1642 ||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||| Sbjct 1442 TCATAGACTACAAATCCGAGAATATCAAGACTGTCTTGAAAAAAGAGTTTCCAAAGGGTG 1501 Query 1643 TAAATATCATCTATGAATCTGTAGGTGGTCAAATGTTTGACATGTGCTTGAATGCTCTTG 1702 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1502 TGGATATCATCTATGAATCTGTAGGTGGTCAAATGTTTGACATGTGCTTGAATGCTCTTG 1561 Query 1703 CTGTTTACGGACGACTCATCGTGATTGGAATGATCTCTCAGTATCAAGGAGAGAAGGGAT 1762 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1562 CTGTTTACGGAAGACTCATCGTGATTGGAATGATCTCTCAGTATCAAGGAGAGAAGGGAT 1621 Query 1763 GGGAACCTGCAAAATATCCAGGGCTCTGCGAGAAAATTTTAGCAAAAAGCCAAACCGTGG 1822 ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1622 GGGAACCCGCAAAATATCCAGGGCTCTGCGAGAAACTTTTAGCAAAAAGCCAAACCGTGG 1681 Query 1823 CTGGTTTCTTTCTGGTGCAATATAGTCAACTGTGGAAACAAAATCTTGACAAGTTGTTCA 1882 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1682 CTGGTTTCTTTCTGGTGCAATACAGTCAACTGTGGAAACAAAATCTTGACAAGTTATTCA 1741 Query 1883 ATCTTTACGCTCTCGGAAAGCTCAAGGTTGGGATTGATCAGAAAAAGTTTATAGGTCTAA 1942 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1742 ATCTTTACTCTCTCGGAAAGCTTAAGGTTGGGATTGATCAGAAAAAGTTTATAGGTCTAA 1801 Query 1943 ATGCTGTAGCAGATGCTGTTGAATATCTGCATTCGGGTAAAAGCACCGGAAAGGTTGTCG 2002 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1802 ATGCTGTAGCAGATGCTGTTGAATATCTGCATTCGGGTAAAAGCACCGGAAAGGTTGTCG 1861 Query 2003 TTTGCATTGATCCCGCATTTGAGCAGAAAACGTCGAGACTGTA 2045 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1862 TTTGCATTGATCCCGCATTTGAGCAGAAAACGTCGAGACTGTA 1904 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 106919317715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5