BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G49720.2 Length=1589 Score E Sequences producing significant alignments: (Bits) Value Ahg474101 jgi|Araly1|474101|fgenesh2_kg.1__4055__AT1G49720.1 1701 0.0 Ahg474105 jgi|Araly1|474105|fgenesh2_kg.1__4059__AT1G49730.1 111 1e-23 > Ahg474101 jgi|Araly1|474101|fgenesh2_kg.1__4055__AT1G49720.1 Length=1533 Score = 1701 bits (921), Expect = 0.0 Identities = 1088/1165 (93%), Gaps = 25/1165 (2%) Strand=Plus/Plus Query 68 AGAATTTGGAAGGAAGTGATTCCGTTGTGAAACAGAAAAGAAGTATGGGTACTCACATTG 127 |||| |||||||||||||||| | |||||||||||| ||||||||||||||||||||| | Sbjct 90 AGAA-TTGGAAGGAAGTGATTTC-TTGTGAAACAGAGAAGAAGTATGGGTACTCACATCG 147 Query 128 ATATCAACAACTTAGGCGGCGATACT-TCT--A--G-A-G-G-G-AATG------AGTCA 171 || |||||||||||||||||||| | ||| | | | | | | |||| ||||| Sbjct 148 ATTTCAACAACTTAGGCGGCGAT-TTGTCTGGAGGGAATGAGTGTAATGCTAACCAGTCA 206 Query 172 AAGCCATTGGCGAGGCAGTCTTCGTTATATTCCTTAACGTTTGATGAGCTTCAGAGCACA 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 207 AAGCCATTGGCGAGGCAGTCTTCGTTATATTCCTTAACGTTTGATGAGCTTCAGAGTACA 266 Query 232 TTAGGTGAGCCGGGGAAAGATTTTGGGTCTATGAATATGGATGAGTTACTCAAGAACATA 291 ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 267 TTAGGTGAGCCAGGGAAAGATTTTGGGTCAATGAATATGGATGAGCTACTCAAGAACATA 326 Query 292 TGGACTGCTGAGGATACTCAAGCCTTTATGACTACTACATCTTCGGTTGCAGCCCCGGGA 351 |||||| |||||||||||||||||||||||||| ||||||||||||||||||| || || Sbjct 327 TGGACTACTGAGGATACTCAAGCCTTTATGACTGCTACATCTTCGGTTGCAGCAGCGAGA 386 Query 352 CCTAGTGGTTTTGTTCCGGGAGGAAATGGTTTACAGAGGCAAGGCTCCTTGACCTTGCCT 411 |||||||||| |||||||||||| |||| |||||||||||||||||||||||| |||||| Sbjct 387 CCTAGTGGTTGTGTTCCGGGAGGGAATGCTTTACAGAGGCAAGGCTCCTTGACTTTGCCT 446 Query 412 AGAACGCTTAGTCAGAAGACTGTCGATGAAGTCTGGAAATACCTGAATTCGAAAGAAGGT 471 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 447 AGAACGCTTAGTCAGAAGACTGTCGATGAAGTCTGGCAATACTTGAATTCGAAAGAAGGT 506 Query 472 AGTAATGGGAATACTGGAACGGATGCGCTTGAGAGGCAACAGACTTTAGGGGAAATGACT 531 || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 507 AGCAATGGGAATACTGGAACGGATGCGCCTGAGAGGCAACAGACTTTAGGGGAAATGACT 566 Query 532 CTGGAAGATTTCTTACTCCGTGCTGGCGTTGTTAAAGAAGATAATACTCAGCAGAACGAA 591 ||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| || Sbjct 567 CTGGAGGATTTCTTGCTCCGTGCTGGCGTTGTTAAAGAAGATAATGCTCAGCAGAACAAA 626 Query 592 AACAGTAGTAGCGGGTTTTATGCTAACAACGGTGCTGCTGGTTTGGAGTTTGGATTTGGT 651 |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 627 AACAGTAGTACCGGGTTTTATGCTAACAACAGTGCTGCTGGTTTGGGGTTTGGATTTGGT 686 Query 652 CAGCCGAATCAAAACAGCATATCGTTCAACGGGAACAATAGTTCTATGATCATGAATCAA 711 |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || Sbjct 687 CAGCCGAATCAAAACAGCATATCGTTCAACGGCAACAATAATTCTATGATCATGAATAAA 746 Query 712 GCACCTGGTTTAGGCCTCAAAGTTGGTGGAACCATgcagcagcagcagcagccacatcag 771 ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 747 GCACCTGTTTTAGGCCTCAAAGTTGGTGGAACCAT------GCAGCAGCAGCCACATCAG 800 Query 772 cagcagttgcagcagcCACATCAGAGACTGCCTCCAACTATCTTTCCAAAACAAGCGAAT 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 801 CAGCAGTTGCAGCAGCCACATCAGAGACTGCCTCCAACTATCTTTCCAAAACAAACGAAT 860 Query 832 GTAACATTTGCGGCGCCTGTAAATATGGTCAACAGGGGTTTATTTGAGACTAGCGCAGAT 891 ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 861 GTAACATTTGCAGCGCCTGTGAATATGGTCAACAGGGGTTTATTTGAGACTGGCGCAGAT 920 Query 892 GGTCCAGCCAACAGTAATATGGGAGGAGCAGGGGGTACTGTTACAGCTACTTCTCCTGGG 951 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 921 GGTCCAGTCAACAGTAATATGGGAGGAGCAGGGGCCACTGTTACAGCTACTTCTCCTGGG 980 Query 952 ACGAGCAGTGCAGAAAACAATACTTGGTCATCACCAGTTCCTTACGTGTTTGGTCGGGGA 1011 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| | Sbjct 981 ACGAGCAGTGCAGAAAACAATGCTTGGTCATCACCAGTTCCTTATGTGTTTGGTCGGGCA 1040 Query 1012 AGAAGAAGCAATACGGGCCTGGAGAAGGTTGTTGAGAGAAGGCAAAAGAGAATGATCAAG 1071 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1041 AGAAGAAGCAATACCGGCCTGGAGAAGGTTGTTGAGAGAAGGCAAAAGAGAATGATCAAG 1100 Query 1072 AATCGGGAATCCGCTGCTAGATCAAGGGCTCGAAAACAGGCTTATACCTTGGAACTGGAA 1131 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1101 AATCGGGAATCCGCTGCTAGATCAAGGGCTCGAAAGCAGGCTTATACCTTGGAACTGGAA 1160 Query 1132 GCTGAGATTGAAAGTCTCAAGCTAGTGAATCAAGATTTGCAGAAGAAACAGGCTGAAATA 1191 || ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 1161 GCCGAGATTGAAAGTCTCAAGCAAGTGAATCAAGATTTGCAGAAAAAACAGGCTGAAATT 1220 Query 1192 ATGAAAACCCATAATAGTGAGGTAA 1216 |||||||| || ||||||||| ||| Sbjct 1221 ATGAAAACTCAGAATAGTGAGCTAA 1245 Score = 385 bits (208), Expect = 6e-106 Identities = 276/306 (90%), Gaps = 15/306 (5%) Strand=Plus/Plus Query 1238 CTAAAGGAATTTTCGAAGCAGCCTCCATTGCTGGCCAAAAGACAATGCTTGAGAAGAACC 1297 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1242 CTAAAGGAATCGTCGAAGCAGCCTCCATTGCTGGCCAAAAGACAATGCTTGAGAAGAACC 1301 Query 1298 CTTACCGGTCCGTGGTAAGAAGGTGAAGTCAAAGCAAGAAGAACCTGCTAATGTAATACA 1357 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1302 CTTACCGGTCCGTGGTAAAAAGGTGAAGTCAAAGCAAGAAGAGCCTGCTAATGTAATACA 1361 Query 1358 GGACCACTCAAAAGGAAGACACTGGGAGAGTAATATGTAATAGAAGATAGTGCTACTGTA 1417 |||| ||||| |||||| ||||||| |||||||||||||| ||||||||||||||| Sbjct 1362 TCACCA---AAAAG-AAGACATTGGGAGACTAATATGTAATAGATGATAGTGCTACTGTA 1417 Query 1418 CAGGAGAAATTACAGAGACGCTTACAATGTAGAAATCTTTTGAGCTGAATTTAACTAAGA 1477 ||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||||| Sbjct 1418 CAGGAGAGATTACAGAGACTCTTACAATGTAGAAATCTTT-GAGCTGAATCTAACTAAGA 1476 Query 1478 GTGCAGTCTGTGTAGAGTATGAGA-GCTTTCAATATGAATTCATAATTTTCATAAACATA 1536 |||| | | ||||| ||| ||||||||||||||||||||||||||||| | ||| Sbjct 1477 GTGC--T------A-AGTATCAGAAGCTTTCAATATGAATTCATAATTTTCATATATATA 1527 Query 1537 TGTAAA 1542 |||||| Sbjct 1528 TGTAAA 1533 > Ahg474105 jgi|Araly1|474105|fgenesh2_kg.1__4059__AT1G49730.1 Length=2177 Score = 111 bits (60), Expect = 1e-23 Identities = 81/90 (90%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 1501 AGCTTTCAATATGAATTCATAATTTTCATAAACATATGTAAAACTTTCAGATTTAGCTAT 1560 |||||||||||||||||||||||||||||| | ||||||||| ||||| |||||||||| Sbjct 2177 AGCTTTCAATATGAATTCATAATTTTCATATATATATGTAAA-CTTTCCTATTTAGCTAT 2119 Query 1561 AGAGAAGATGTGACT-AACTCAGAAAGAAA 1589 ||||| ||||||| |||||||||||||| Sbjct 2118 AGAGA---TGTGACTTAACTCAGAAAGAAA 2092 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59535052935 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5