BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G49740.1 Length=1844 Score E Sequences producing significant alignments: (Bits) Value Ahg474106 jgi|Araly1|474106|fgenesh2_kg.1__4060__AT1G49740.1 2139 0.0 > Ahg474106 jgi|Araly1|474106|fgenesh2_kg.1__4060__AT1G49740.1 Length=1603 Score = 2139 bits (1158), Expect = 0.0 Identities = 1396/1503 (93%), Gaps = 47/1503 (3%) Strand=Plus/Plus Query 1 ACCGACTCACGCGCACTTCCGTTCACTCTATTTTTATCCTTAAAATCCTCTCATTGTATT 60 |||||| |||||||||||||||||||||||||||||||||||||||||||||| | || | Sbjct 1 ACCGACACACGCGCACTTCCGTTCACTCTATTTTTATCCTTAAAATCCTCTCA-T-TA-T 57 Query 61 TACTTTATTTTATTTGT-TTCTTAGAATCT-TTTTCACGCAAATGCAAACCACCAACAAA 118 | | ||| || |||| | || || || | |||||||||||||||||||||||||| || Sbjct 58 T-CATTA-TTCATTT-TATT-TT---ATTTGTTTTCACGCAAATGCAAACCACCAACCAA 110 Query 119 TCTATATTCTAGCATGATGATGAAGTAGCTACTTGcttcttcttcttcttcttcttAAAT 178 |||| | |||| ||| |||||||||||||| |||| |||||||||||||||||||||| Sbjct 111 TCTA-A-TCTAACATCATGATGAAGTAGCTTCTTG---CTTCTTCTTCTTCTTCTTAAAT 165 Query 179 TTTGGGGTTTTTACTTTTTGGTGAAGACAGCCATGTTTCAAAGATTATTACTCTTCCTTC 238 ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 166 TTTTGGGTTTTTACTTTTTGGCGAAGATAGCCATGTTTCAAAGATTATTACTCTTCCTTC 225 Query 239 TCATTGCTCTTCTGCTCCAATCTTCTTTCCTTTTAGAGATTTCCTCTGCTCTCAAGGAAG 298 |||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 226 TCATAGCTCTTCTGGTTCAATCTTCTTTCCTTTTAGAGATTTCCTCTGCTCTCAAGGAAG 285 Query 299 GAAAAACATGTATAACAAACAGCAACTGTGACGCTGGATTACACTGCGAAACATGTATAG 358 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 GAAAAACATGTATAGCAAACAGCAACTGTGACGCTGGATTACACTGCGAAACATGTATAG 345 Query 359 CCAACACTGATTTTAGACCTAGATGCTCCAGAACCCAACCCATCAACCCCATCACCAAGG 418 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 346 CCAACACTGATTTTAGACCTAGATGCTCCCGAACCCAACCCATCAACCCCATCTCCAAGG 405 Query 419 CAAAGGGGTTGCCTTTTAACAAGTATTCATGGTTAACCACACACAACTCTTTTGCTCGTT 478 ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 406 CAAAGGGATTGCCTTTCAACAAGTATTCATGGTTAACCACACACAACTCCTTTGCTCGTT 465 Query 479 TGGGGGAAGTATCACGGACCGGTTCTGCT-ATTTTGGCTCCTACTAACCAGCAAGATTCA 537 ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| Sbjct 466 TGGGGGAAGTATCACGGACCGGTTCTG-TGATTTTGGCGCCTACTAACCAGCAAGATTCA 524 Query 538 ATCACAAGCCAACTCAATAATGGTGTAAGAGGGTTTATGCTCGACATGTATGACTTCCAA 597 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 525 ATCACAAGCCAACTCAATAATGGTGTAAGAGGGTTTATGCTCGACATGTATGACTTCGAA 584 Query 598 AACGATATCTGGCTTTGCCATTCTTTCGATGGAACATGTTTCAATTTCACCGCTTTTCAA 657 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 585 AACGATATCTGGCTTTGCCATTCTTTCGACGGAACATGTTTCAATTTCACAGCTTTTCAA 644 Query 658 CCGGCTATTAACATTTTAAGGGAGTTTCAAGTGTTTCTAGAGAAGAACAAAGAGGAAGTT 717 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 645 CCGGCGATTAACATTTTAAGGGAGTTTCAAGTGTTTCTAGAGAAGAACACAGAGGAAGTT 704 Query 718 GTAACGATTATCATCGAAGATTATGTGAAATCGCCTAAAGGTCTCACAAAAGTGTTTGAT 777 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 705 GTAACGATTATCATCGAAGACTATGTGAAATCTCCTAAAGGTCTCACAAAAGTGTTTGAT 764 Query 778 GCGGCTGG-CTTACGAAAGTTCATGTTTCCAGTATCTAGAATGCCCAAAAATGGAGGGGA 836 |||||||| || |||||||||||||||||| ||| |||||||||||||||||||||| || Sbjct 765 GCGGCTGGGCT-ACGAAAGTTCATGTTTCCGGTAGCTAGAATGCCCAAAAATGGAGGAGA 823 Query 837 CTGGCCAAGGCTTGATGACATGGTGCGAAAAAACCAACGGTTGCTAGTTTTTACATCCGA 896 |||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||| || Sbjct 824 TTGGCCAAGGCTTGACGACATGGTTCGACAAAACCAACGGTTGCTTGTTTTTACATCTGA 883 Query 897 TTCACATAAAGAAGCAACCGAAGGGATCGCCTATCAATGGAAGTATATGGTTGAGAATCA 956 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 884 TTCACATAAAGAAGCAACCGAAGGGATCGCATATCAATGGAAGTATATGGTTGAGAATCA 943 Query 957 ATATGGAAATGGAGGGTTGAAGGTAGGAGTGTGTCCAAATAGAGCTCAATCAGCGCCAAT 1016 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || Sbjct 944 ATATGGAAATGGAGGACTGAAGGTAGGAGTGTGTCCAAATAGAGCTCAATCAGCACCGAT 1003 Query 1017 GAGCGATAAATCAAAATCTCTTGTTCTTGTGAACCATTTCCCTGATGCTGCGGATGTGAT 1076 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1004 GAGCGATAAATCGAAATCTCTTGTTCTTGTGAACCATTTCCCTGATGCTGCGGATTTGAT 1063 Query 1077 AGTAGCATGTAAGCAAAACTCAGCTTCTCTTCTTGAATCCATAAAGACATGTTACCAAGC 1136 |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1064 AGTAGCATGTAAACAAAACTCTGCTTCTCTTCTTGAATCCATCAAGACATGTTACCAAGC 1123 Query 1137 CGCGGGACAGCGATGGCCTAACTTCATAGCAGTCGATTTCTACAAGAGAAGCGATGGTGG 1196 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1124 CGCAGGACAGCGATGGCCTAACTTCATAGCAGTCGATTTCTACAAGAGAAGCGATGGTGG 1183 Query 1197 AGGAGCTCCGCAAGCGGTTGATGTTGCGAATGGCAATTTGATATGCGGTTGCGATAACTT 1256 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1184 AGGAGCTCCCCAAGCAGTTGATGTTGCGAATGGCAATTTGATATGCGGTTGCGATAACTT 1243 Query 1257 TGCAGCGTGCAAGGCTGACGGCAAATGTGGATAGTAAGAAAGACTGAGCCACCAGAAGCA 1316 |||| ||||||||| ||||||||| ||||||||| || |||||||||||||||||||||| Sbjct 1244 TGCAACGTGCAAGGGTGACGGCAAGTGTGGATAGCAAAAAAGACTGAGCCACCAGAAGCA 1303 Query 1317 ACTCCCATAACCAAA-GGCTTTCTGCGTTTGTTGTCACCTTTGTGTCATCTTTTCCATAA 1375 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1304 ACTCCCATAACCAAAAGGCTTTCTGCGTTTGTTGTCACCTTTGTGTCATCTCTTCCATAA 1363 Query 1376 AGTTTTA-GCTA---GTGTAGTAACGGTTAGTTTTTGTTTTAGATTATTTAGAGATTAGT 1431 ||||| | ||| |||||||||||||||||||||||||| | | | | Sbjct 1364 AGTTTGAAGCTTTTCGTGTAGTAACGGTTAGTTTTTGTTTT---T------G---T-A-- 1408 Query 1432 ACTGTACTGGTTAGTTTCATTACTCTAAATTTCCTAATCATATATGAACTAGTCACCGAA 1491 | || | |||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 1409 A-TG----G-TTAGTTTCATTATTCTAAATTTCCTAATCATATACGAACTAGTCACCGAA 1462 Query 1492 TAA 1494 ||| Sbjct 1463 TAA 1465 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69248065410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5