BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49750.1
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474107 jgi|Araly1|474107|fgenesh2_kg.1__4061__AT1G49750.1 1812 0.0
Ahg479447 jgi|Araly1|479447|fgenesh2_kg.3__2148__AT3G19320.1 699 0.0
> Ahg474107 jgi|Araly1|474107|fgenesh2_kg.1__4061__AT1G49750.1
Length=1659
Score = 1812 bits (981), Expect = 0.0
Identities = 1185/1281 (93%), Gaps = 24/1281 (2%)
Strand=Plus/Plus
Query 242 ccttctccccctccatgccctcctcca--ccct-ctcctcctccaagccctcctcctcca 298
||| |||| ||||| |||||||||| |||| ||||||||||| |||||||| |||||
Sbjct 200 CCTCCTCCACCTCC---CCCTCCTCCATGCCCTCCTCCTCCTCCATGCCCTCCTGCTCCA 256
Query 299 cagcttcca-c-c-tcctccacagcttccGCCGCCTGCACCGCCTAAACCCCAGCCATCG 355
||||||||| | | ||| |||| || ||| || ||| | ||||| || || | ||
Sbjct 257 CAGCTTCCACCGCATCCACCACCGCATCCACCACCT--A-CGCCT-AA--GAAG-C--CG 307
Query 356 CCGCCAACACCTGATCTACCGTTTGCGAGCTCATTATTAAAGAAAGTCTATCCAGTTCTC 415
||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct 308 CCGCCAACACCTGATCTACAGTTTGCGAGCTCACTAATAAAGAAAGTCTATCCAGTTCTG 367
Query 416 CAAAGATTTAAGGATCTAGTCGCAGATGATAAACTTAAGTCTTGGGAAGGCCCCGACATT 475
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 368 CAAAGATTCAAGGATCTAGTCGCAGATGATAAACTTAAGTCTTGGGAAGGACCCGACATT 427
Query 476 TGCAACAAATACCTCGGACTCAAATGCGCCA-TTTTCCCGAAAACAAAGCATCTCGCACT 534
|||||||||||||||||||||||||| || | |||||| | || || | ||||||||||
Sbjct 428 TGCAACAAATACCTCGGACTCAAATGTGCGATTTTTCCAGGAACCACCG-ATCTCGCACT 486
Query 535 CGCGAGCGTCCAGTTTAATGGGTTAAACTTGAGAGGCAAGATAGGCAAGATCCTCAAGTT 594
|| || |||| |||||||||||||||| ||||||| ||||| |||||||| ||| |||
Sbjct 487 CGGGATCGTCAAGTTTAATGGGTTAAAATTGAGAGCCAAGAGAGGCAAGAAACTCCTGTT 546
Query 595 AGATAACTTCCTCGACAAGTTAGAAGAAGTCACCATCTTCCACGCAAACTCCAACGGTTT 654
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 547 AGATAGCTTCCTCGACAAGTTAGAAGAAGTCACCATCTTCCACGCAAACTCCAACGATTT 606
Query 655 CACAGGCTCTGTGCCTGATTTCAGCAATTTGAAATTCTTATACGAGCTCGATCTAAGCAA 714
|| ||||||||||||||| ||||||| |||| || ||||| ||||||||||||||||||
Sbjct 607 CATAGGCTCTGTGCCTGACATCAGCAAGTTGACATACTTATTCGAGCTCGATCTAAGCAA 666
Query 715 CAACAAACTCACAGGAGATTTCCCAACTAGTGTCTTGAAAG-GAAACAATCTCACGTTTC 773
|||||||||||| |||||||||||||| | ||||||| | | |||||||||||||||||
Sbjct 667 CAACAAACTCACCGGAGATTTCCCAACCAATGTCTTG-ATGAAAAACAATCTCACGTTTC 725
Query 774 TTGATCTCAGGTTCAATTC-TTTCTCAGGCTCTGTTCCTCCTCAGGTCTTTAATCTCGAC 832
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 726 TTGATCTCAGGTTCAA-TCAGTTCTCAGGCTCTGTTCCTCCTCAGGTCTTTAATCTCGAC 784
Query 833 CTCGACGTCTTGTTCATCAACAACAACAATCTTGTTCAGAAGCTTCCACTCAATCTTGGA 892
|| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 785 CTTGATGTCTTGTTCATCAACAACAACAATCTTGTTCAGAAGCTTCCAAGCAATCTTGGA 844
Query 893 TCCATCACTGCTCTTTACCTCACCTTCGCCAACAACAGGTTCACGGGTCCAATTCCCGAA 952
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 845 TCCATCACTGCTCTTTACCTCACCTTCGCCAACAACAGGTTCACGGGTTCAATACCCGAG 904
Query 953 AGCATAGGCAACATCAAGTACCTACAAGAAGTCCTTTTCCTGAATAACAAGTTAACCGGA 1012
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 905 AGCATAGGCAACATCAAGTACCTACAAGAAGTCCTTTTCTTGAATAACCAGTTAACCGGA 964
Query 1013 TGCTTACCGTACCAAATCGGAAACCTAACCCGAGCCACTGTTTTCGATGTTGGGTTCAAC 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TGCTTACCGTACCAAATCGGAAACCTAACCCGAGCCACTGTTTTCGATGTTGGGTTCAAC 1024
Query 1073 CAATTAACCGGTCCAATACCGTACTCTTTCGGTTGCTTAGAAACGATGGAACAACTCAAT 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 CAATTAACCGGTCCAATACCGTACTCTTTCGGTTGCTTAGAAACGATGGAACAACTCAAT 1084
Query 1133 TTAGCCGGAAACAAGTTCTATGGAACCATACCGGAGATTGTATGCGAGATTGCTTGTCTC 1192
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1085 TTAGCCGGAAACAAGTTCTATGGAACCATACCGGAGATCGTATGCGAGATTGCTTGTCTC 1144
Query 1193 CAAAACGTTTCTCTCTCGAATAATTACTTCACTCAGGTTGGTCCGAAATGTAGAAAACTC 1252
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 AAAAACGTTTCTCTCTCGTATAATTACTTCACTCAGGTTGGTCCGAAATGTAGAAAACTC 1204
Query 1253 ATCAAGAGAAAAATTATGGACGTTAGTATGAATTGTATACTTGATCTTCCAAACCAGAAA 1312
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 ATCAAGAGAAACATTATGGACGTTAGTATGAATTGTATACTTGATCTTCCAAACCAGAAA 1264
Query 1313 ACGCCATCGGAGTGTGCTAAGTTCTTCATGCGGAAACAGACTTGTCCTAATTCCAAGTCT 1372
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1265 ACGCCATCGGAGTGTGCTAAGTTCTTCATGCGGAAACAGACTTGTCTTAATTCCAAGTCT 1324
Query 1373 TTGTTTACTGTCCCTTGTGATAAGAATCCAAACCGGGGTAAACCGGATCAAGAACGATTG 1432
||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 1325 TTGTTTACTGTCCCTTGTGGTAAGAATCCAAACAGGGTTAAACCGGATCAAGAACAATTG 1384
Query 1433 GAGGAGGAAAAAGCTCAAGTTTCTCATCCGGTAACTTACAACACACTTAACCCGGACCGG 1492
||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1385 GAGGACGAAAAAGCTCGAGTTTCTCATTCGGTATCTTACAACACACTTAACCCGGACCGG 1444
Query 1493 CTTCGGAATCTATAACCTTGG 1513
||||||||||||||||||||
Sbjct 1445 ATTCGGAATCTATAACCTTGG 1465
Score = 346 bits (187), Expect = 3e-94
Identities = 227/245 (93%), Gaps = 8/245 (3%)
Strand=Plus/Plus
Query 1 ACCACAAAAtctcatcaactcaatggcttcaattctctcaattcttcttctcattctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCACAAAATCTCATCAACTCAATGGCTTCAATTCTCTCAATTCTTCTTCTCATTCTTTC 60
Query 61 actttcaaatctccacttcacttcaaCC-ACCGGAAACAACCACATTAACGACAGAAAAT 119
|||||| |||||||||||||||| | || |||||||||| ||||||||||||||||||||
Sbjct 61 ACTTTCTAATCTCCACTTCACTTTA-CCTACCGGAAACAGCCACATTAACGACAGAAAAT 119
Query 120 CCTTAGAAATCATTATCGGTGGTGGTAACGACAACAATCCTCCACCGTCACCTTCACCGG 179
|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 120 CCTTAGAAATCATTATCGGTGGTGGTGACGACGGCAATCCTCCACCGTCACC------GG 173
Query 180 AACCAGAACCAGAACCTGCAGATTGccctcctccccctcctcctcctccatgccctcctc 239
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 174 AACCGGAACCAGAACCTGCAGATTGCCCTCCTCCACCTCCCCCTCCTCCATGCCCTCCTC 233
Query 240 cacct 244
| |||
Sbjct 234 CTCCT 238
Score = 239 bits (129), Expect = 6e-62
Identities = 170/189 (90%), Gaps = 5/189 (3%)
Strand=Plus/Plus
Query 1565 AGCCAAGTTGTTTATAATTTGAGGTGTCTAATGCAATATAAGTGAATAAATGTATT-GTA 1623
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1475 AGCCAAGTTGTTTATAATTTGAGGTGTCTAATGCAATATAAAAGAATAAATGTATTTGTA 1534
Query 1624 GTTGTGTACTTTCGGATCATCACTATATGTATTTTCATTGATGTATAATCCATCCTTCTG 1683
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 1535 GTTGTGTACTTTCGGATCATCACTATATGTATTTTCATTGTTGTTTAATCCATCCTT-T- 1592
Query 1684 TTTTTTCTTTGTACATCTTGCTTTGTGTGAATCACTGTAAAATTGTTCATCCAATGGTGG 1743
| || | |||||||| ||||| |||||||||| ||| ||||||||||||||||||
Sbjct 1593 TCTTAA-TAAA-ACATCTTGTTTTGTATGAATCACTGCAAACTTGTTCATCCAATGGTGG 1650
Query 1744 ATATCATCG 1752
|||||||||
Sbjct 1651 ATATCATCG 1659
> Ahg479447 jgi|Araly1|479447|fgenesh2_kg.3__2148__AT3G19320.1
Length=1485
Score = 699 bits (378), Expect = 0.0
Identities = 801/999 (80%), Gaps = 53/999 (5%)
Strand=Plus/Plus
Query 458 TGGGAAGGCCCCGACATTT--G--CA--ACAAATACCTCGGACTCA-AATGCGCCATTTT 510
|||| |||| ||||||||| | || ||||||| | ||||| | | ||||||| ||
Sbjct 448 TGGGTAGGCACCGACATTTGCGCTCAGGACAAATATATAGGACT-AGAGTGCGCCAAGTT 506
Query 511 CCCGAAAACAAAGC-ATCTCGCACTCGCGAGCGTCCAGTTTAATGGGTTAAACTTGAGAG 569
|||| |||||| | | |||||||| || ||| | ||||| || || |||||| |||
Sbjct 507 CCCGGGAACAAA-CGACCTCGCACTTGCCAGCATTCAGTTCAACAACTTTAACTTGGGAG 565
Query 570 GCAAGATAGGCAAGATCCTCAAGTTAGATAACTTCCTCGACAAGTTAGAAGAAGTCACCA 629
||||| | || ||| | ||||||||||||| |||||||||||||||||||||
Sbjct 566 GCAAG--A---AA-CTCCGC---CTAGATAACTTCCTTAACAAGTTAGAAGAAGTCACCA 616
Query 630 TCTTCCACGCAAACTCC-AACGGTTTCACAGGCTCTGTGCCTGATTTCAGCAATTTGAAA 688
||||||||||||| | ||| ||||| |||||||| || | |||||||| |||||
Sbjct 617 TCTTCCACGCAAA-TAGTAACAGTTTCGTGGGCTCTGTTCCAAAATTCAGCAACTTGAAG 675
Query 689 TTC-TTATACGAGCTCGATCTAAGCAACAACAAACTCACAGGAGATTTCCCAA-CTAGTG 746
| | || | |||||| ||||| |||||||| || ||| | ||||| ||||||| || ||
Sbjct 676 TACCTTTT-CGAGCTTGATCTCAGCAACAATAAGCTCTCTGGAGAGTTCCCAAGCTC-TG 733
Query 747 T-CTTGAAAGGAAACAATC-TCACGTTTCTTGATCTCAGGTTCAATTCTTTCTCAGGCTC 804
| || |||| || ||| | | |||||||| |||||||| |||||||||||||| || ||
Sbjct 734 TACTA-AAAGCAA-CAAACCTAACGTTTCTCGATCTCAGATTCAATTCTTTCTCCGGTTC 791
Query 805 TGTTCCTCCTCAGGTCTTTAATCTCGACCTCGACGTCTTGTTCATCAACAACAACAATCT 864
||| |||||||| || |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 792 TGTGCCTCCTCATGTTTTTAATCTCGACCTGGACGTATTGTTCATCAACAACAACAATCT 851
Query 865 TGTTCAGA-AGCTTCCACTCA-A-TCTTGGATCCATCACTGCTCTTTACCTCACCTTCGC 921
|||||||| | || || || | | ||| |||||||||||||||||||||||||| |||||
Sbjct 852 TGTTCAGAGA-CT-CC-CTGAGAATCTCGGATCCATCACTGCTCTTTACCTCACATTCGC 908
Query 922 CAACAACAGGTTCACGGGTCCAATTCCCGAAAGCATAGGCAACATCAAGTACCTACAAGA 981
|||||||| ||||| ||||| ||||| | |||||| || ||||||||| |||||||||
Sbjct 909 TAACAACAGATTCACAGGTCCTATTCCGGGAAGCATTGGTGACATCAAGTCCCTACAAGA 968
Query 982 AGTCCTTTTCCTGAATAACAAGTTAACCGGATGCTTACCGTACCAAATCGGAAACCT-AA 1040
|||||||||| |||||||||||||||| || |||||||| |||||||| || ||||| ||
Sbjct 969 AGTCCTTTTCTTGAATAACAAGTTAACAGGTTGCTTACCATACCAAATTGGGAACCTTAA 1028
Query 1041 CCCGAGCCACTGTTTTCGATGTTGGGTTCAA-CCAATTAACCGGTCCAATACCGTACTCT 1099
|| |||| || ||||||||||||| || ||| ||| |||||||||| || |||||||||
Sbjct 1029 CC-GAGCTACGGTTTTCGATGTTGAGT-CAAACCAGTTAACCGGTCTGATTCCGTACTCT 1086
Query 1100 TTCGGTTGCTTAGA-AACGATGGAACAACTCAATTTAGCCGGAAACAAGTTCTATGGAAC 1158
||||| ||| || | || |||||| || |||||||| || ||||||| ||||| || ||
Sbjct 1087 TTCGGATGCCTAAACAA-GATGGAGCAGCTCAATTTGGCTAGAAACAACTTCTACGGTAC 1145
Query 1159 CATACCGGAGATTGTATGCGAGAT-TGCTTGTC-TCCAA-AACGTTTCTCTCTCGAATAA 1215
|||||||||||||| |||||| | | | | | || || ||| ||||||||||| ||
Sbjct 1146 TATACCGGAGATTGTCTGCGAGCTCT-CA-GCCCTC-AAGAACCTTTCTCTCTCGTCCAA 1202
Query 1216 TTACTTCACTCAGGTTGGTCCGAAATGTAGAAAACTCATCAAGAGAAAAATTATGGACGT 1275
||||||||| ||||| ||||| |||||| ||| ||||||||| || || ||| | || ||
Sbjct 1203 TTACTTCACGCAGGTAGGTCCAAAATGTCGAACACTCATCAAAAGGAAGATTCTTGATGT 1262
Query 1276 TAGTATGAATTGTATACTTGATCTTCCAAACCAGAAAA-CGCCATCGGAGTGTGCTAAGT 1334
|||||||||||||||| |||||| | || || || | | |||| ||| || || ||||
Sbjct 1263 GGGTATGAATTGTATACTAGATCTTGCGAATCA-AAGAGCACCATGGGAATGCGCCAAGT 1321
Query 1335 TCTTCATGCGGAAACAGACTTGTCCTAATTCCAAGTCTTTGTTT-ACTGTCCCTTGTG-A 1392
| ||| |||||||||||| ||||||||| | |||||||| ||| | ||||||||||| |
Sbjct 1322 TTTTCTTGCGGAAACAGAGTTGTCCTAACTATAAGTCTTTCTTTTA-TGTCCCTTGTGGA 1380
Query 1393 TAAGAATCCAAACCGGGGTAAACCGGATCAAGAACGATT 1431
|||| ||| ||||| |||||| ||||||||| ||||
Sbjct 1381 AAAGA-TCCGCACCGGATTAAACCAGATCAAGAAGGATT 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5