BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49780.1
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474109 jgi|Araly1|474109|fgenesh2_kg.1__4063__AT1G49780.1 2137 0.0
Ahg479456 jgi|Araly1|479456|fgenesh2_kg.3__2157__AT3G19380.1 883 0.0
Ahg946807 jgi|Araly1|946807|scaffold_703036.1 501 5e-141
Ahg951771 jgi|Araly1|951771|scaffold_15800002.1 496 3e-139
Ahg930537 jgi|Araly1|930537|scaffold_302994.1 414 7e-115
> Ahg474109 jgi|Araly1|474109|fgenesh2_kg.1__4063__AT1G49780.1
Length=1286
Score = 2137 bits (1157), Expect = 0.0
Identities = 1244/1287 (97%), Gaps = 2/1287 (0%)
Strand=Plus/Plus
Query 24 aaaaaaaaTGCCGGGGAATTTAGAGCCGTTGGATCTCGGAATCCAAATACCATACCATTT 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAATGCCGGGGAATTTAGAGCCGTTGGATCTCGGAATCCAAATACCATACCATTT 60
Query 84 CAGATGCCCAATCTCACTTGACCTAATGTCTGATCCCGTAACCATCTCCACCGGCCAAAC 143
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CAGATGCCCAATCTCACTTGACCTAATGTCCGATCCCGTAACCATCTCCACCGGCCAAAC 120
Query 144 TTACGACCGAACCAGCATCGACTCATGGATCGCTATGGGCAACACCACTTGTCCAGTCAC 203
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TTACGACCGAACCAGCATCGACTCATGGATCGCTATGGGCAACACCACTTGTCCTGTCAC 180
Query 204 ACGTGTCGCTCTCTCCGACTTCACTCTCATCCCTAACCACACTCTCCGCCGTCTTATCCA 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACGTGTCGCTCTCTCCGACTTCACTCTCATCCCTAACCACACTCTCCGCCGTCTTATCCA 240
Query 264 AGAATGGTGCGTCGCTAACCGCTCTAACGGCGTCGAACGGATTCCTACACCTAAACAACC 323
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 241 AGAATGGTGCGTCGCTAACCGCTCTAACGGCGTTGAACGGATTCCTACACCGAAACAACC 300
Query 324 GGCGGATCCAATCTCCGTTAGGTCACTTCTCAGTCAAGCATCCGCAATTACCGGAACTCA 383
|||||||||||||||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct 301 GGCGGATCCAATCTCCGTTAGGTCTCTCCTTAGTCAAGCCTCCGCAATTACCGGAACTCA 360
Query 384 CGTCTCTGTTCGTTCACGCGCCGCCGCTATTCGTCGTTTGAGAGGATTAGCTAGAGATAG 443
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 CGTCTCTGTTCGCTCACGCGCCGCCGCGATTCGTCGTTTGAGAGGATTAGCTAGAGATAG 420
Query 444 TGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGGGAGATTTTGGTGAGGATTTT 503
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 TGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGAGAGATTTTGGTGAGGATTTT 480
Query 504 GTTCGCCGATATTGAAACGACGTCGTTGTCTTCGGAGCTTGTTTCTGAGTCGCTTGCTCT 563
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 481 GTTCGCCGATGTTGAAACGACGTCGTCGTCGTCGGAGCTTGTTTCTGAGTCGCTTGCTCT 540
Query 564 TTTGGTTTTATTGCATATGACGGAGACGGAGTGTGAAGCTGTTGCGTCGGATCCTAGTCG 623
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 541 TTTGGTTTTATTGCATATGACGGAGACGGAGTGTGAAGCTATTGCGTCGGATCCGGGTCG 600
Query 624 GGTCGGGTTTATGACCCGATTGTTGTTTGATTCTTCGATTGAAATTAGGGTTAACGCCGC 683
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTCGGGTTTATGACCCGGTTGTTGTTTGATTCTTCGATTGAAATTAGGGTTAACGCCGC 660
Query 684 CGCGTTGATTGAGATGGTGTTGACCGGAGCGAAATCCATGGATCTGAAATTGATCATTTC 743
||||||||||||||||||||||||||| ||||||| |||||||||||| |||| |||||
Sbjct 661 CGCGTTGATTGAGATGGTGTTGACCGGTTCGAAATCGATGGATCTGAAACTGATAATTTC 720
Query 744 CGGATCTGATTCGATATTCGAAGGCGTTCTCGATCTTCTCAAGAATCCGATTTCATCGCG 803
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGGATCCGATTCGATTTTCGAAGGCGTTCTCGATCTTCTCAAGAATCCGATTTCATCGCG 780
Query 804 GCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTGAAACAAACGAG 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTGAAACAAACGAG 840
Query 864 ACATCTAGCGATCTCCGCCGGAGCTCCGGGGATTTTAATCGACCGTCTCGCGGCGGATTT 923
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACATCTCGCGATCTCCGCCGGAGCTCCGGGGATTTTAATCGACCGTCTCGCGGCGGATTT 900
Query 924 CGATAGGTGTGATACGGAGCGAGGTTTAGCGACAGTGGAGCTTCTTTGCCGATTACCAGA 983
|||||| |||||||| ||||| ||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 901 CGATAGATGTGATACAGAGCGGGGTTTAGCGACGGTGGAGCTTCTCTGCCGGTTACCGGA 960
Query 984 AGGATGTGCTGCGTTTGGTGAGCATGCTTTGACGGTGCCGCTAATGGTGAAGACGATATT 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGGATGTGCTGCGTTTGGTGAGCATGCTTTGACGGTGCCGCTAATGGTGAAGACGATATT 1020
Query 1044 AAGAGTTTCAGATAGAGCGACGGAGTACGCGGCGGGAGCGTTGTTGGCTTTATGTACGGC 1103
|||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1021 GAGAGTTTCGGAAAGAGCGACGGAGTACGCGGCGGGAGCGTTGTTGGCTTTGTGTACGGC 1080
Query 1104 GGAGGAACGGTGTAGAGATGAAGCTGCGGCGGCGGGATTGGTGACGCAGTTGTTGCT-TC 1162
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 1081 GGAGGAACGGTGTAGAGATGAGGCAGCGGCGGCGGGATTGGTGACGCAGTTGTTGCTAT- 1139
Query 1163 TGGTGCAGAGTGATTGTACGGAGAGAGCGAAGAGAAAAGCTCAGATGCTTTTGAAGCTTC 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGGTGCAGAGTGATTGTACGGAGAGAGCGAAGAGAAAAGCTCAGATGCTTTTGAAGCTTC 1199
Query 1223 TCAGAGACTCTTGGCCTGACGATTCTACCGTTCATTCCGACGATTTCAATCGTAGCGAAG 1282
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1200 TCAGAGATTCTTGGCCTGACGATTCTACCGTTAATTCCGACGATTTCAATCGTAGCGAAG 1259
Query 1283 TGGCGCCGTTTTGAGtttttttttttt 1309
|||||||||||||||||||||||||||
Sbjct 1260 TGGCGCCGTTTTGAGTTTTTTTTTTTT 1286
> Ahg479456 jgi|Araly1|479456|fgenesh2_kg.3__2157__AT3G19380.1
Length=1614
Score = 883 bits (478), Expect = 0.0
Identities = 1003/1248 (80%), Gaps = 70/1248 (6%)
Strand=Plus/Plus
Query 30 aaTGCCGGGGAATTTAGAGCCGTTGGATCTCGGAATCCAAATACCATACCATTTCAGATG 89
|||||| | |||||| | || |||||||| |||||||||||||| ||||||||| ||||
Sbjct 184 AATGCCTAGAAATTTACAACCATTGGATCTTGGAATCCAAATACCGTACCATTTCCGATG 243
Query 90 CCCAATCTCACTTGACCTAATGTC-TGATCCC-GTAACCATCTCCACCGGCCAAACTTAC 147
|||||||| || || || ||| | || ||| || ||| ||| |||||||||||| |||
Sbjct 244 TCCAATCTCTCTCGAACTTATG-CAAGA-CCCTGTCACCGTCTGCACCGGCCAAACCTAC 301
Query 148 GACCGAACCAGCATCGACTCATGGATCGCTAT-GG--GCAACACCACTTGTCCAGTCACA 204
|||||| |||||||||| |||||| || | || || |||||| || ||||||||||||
Sbjct 302 GACCGAGCCAGCATCGAGTCATGGGTCTCCATCGGTAACAACACAACCTGTCCAGTCACA 361
Query 205 CGTG-TCGCTCTCTCCGACTTCACTCTCATCCCTAACCACACTCTCCGCCGTCTTATCCA 263
|| | || |||||||||||||||| |||||||| |||||||||||||| ||||| |||||
Sbjct 362 CGCGCTC-CTCTCTCCGACTTCACACTCATCCCCAACCACACTCTCCGTCGTCTCATCCA 420
Query 264 AGAATGGTGCGTCGCTAACCGCTCTAACGGCGTCGAACGGATTCCTACACCTAAACAACC 323
|||||||||||||||||||||||| || ||||||||||| || ||||| |||||||||||
Sbjct 421 AGAATGGTGCGTCGCTAACCGCTCCAATGGCGTCGAACGTATCCCTACTCCTAAACAACC 480
Query 324 GGCGGATCCAATCTCCGTTAGGT-CACTTCTCAGTCAAGCATCCGCAATTACCGGAACTC 382
|| ||||||| ||| ||| || | |||||||||||||| ||||| || || |||||||
Sbjct 481 AGCTGATCCAACCTCTGTT-CGTGCTCTTCTCAGTCAAGCCTCCGCTATAACGGGAACTC 539
Query 383 ACGTCTCTGTTCGTTCACGCGCCGCCGCTATTCGTCGTTTGA-GAGGATTAGCTAGAGAT 441
||||||||||||||||||||||||||||| | || ||||| | | ||||| ||| | |||
Sbjct 540 ACGTCTCTGTTCGTTCACGCGCCGCCGCTCTCCGCCGTTT-ACGTGGATTCGCTCGTGAT 598
Query 442 AGTGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGGGAGATTTTGGTGAGGATT 501
||| || || |||||||||||||| | ||||||||| | ||| ||||| | ||||||
Sbjct 599 TCTGATAAAAACCGCGTTTTGATCGCAGCTCATAACGCTACAGAGGTTTTGATTAGGATT 658
Query 502 TTGTTCGCCGATATTGAAACGACGTCGTTGTCTTCGGAGCTTGTT-TCTGAGTCGCTT-G 559
||||| | | ||||||||||||| | |||| ||| | ||||||||| || |
Sbjct 659 CTGTTCTC---T---GAAACGACGTCGT---C---GGAG-TTGGTCTCTGAGTCG-TTAG 704
Query 560 CTCTT-TTGGTTTTATTGCATATGACGGAGACGGAGT--GTGAAGCT--G-T-TGCGTCG 612
||||| ||| || | || | || ||||| || || | ||| | | | | | | |||
Sbjct 705 CTCTTCTTG-TTATGTTACCGATAACGGA-ACCGAATCAGTGC-GTTTCGATAT-CTTCG 760
Query 613 GATCCTAGTCGGGTCGGGTTTATGACCCGATTGTTGTTTGATTCTTCGATTGAAATTAGG 672
||||| ||||||||| |||| ||||||| ||||| || ||||| ||||| |||| | |
Sbjct 761 GATCCGGGTCGGGTCGAGTTTTTGACCCGGTTGTTATTCGATTCCTCGATCGAAAC-ACG 819
Query 673 -GTTAACGCCGCCGCGTTGATTGAGATGGTGTT-GACCGGAGCGAAATCCATGGATCTGA 730
|||||||||||||||||||| ||||| || || ||| ||| | ||||| | ||||||||
Sbjct 820 CGTTAACGCCGCCGCGTTGATCGAGATTGT-TTCGACGGGAACCAAATCGACGGATCTGA 878
Query 731 AAT---TGAT--C-ATTTCCGGAT-CTGATTC-GATATTCGAAGGCGTTCTCGATCTTCT 782
|| || | | ||||| | || |||| || | |||||||||| ||||||||||||||
Sbjct 879 AAGGAATGTTTTCGATTTC-GAATTCTGAATCTG-TATTCGAAGGAGTTCTCGATCTTCT 936
Query 783 CAAGAATCCGATTTCATCGCGGCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCT 842
| |||||||||||| || || |||||| | || |||||||||||| | | ||||| ||
Sbjct 937 GAGGAATCCGATTTCGTCACGACGAGCTCTCAAAATCGGAATCAAAACTCTGTTCGCGCT 996
Query 843 CTGTCTC-GTGAAA-CAAACGAGACATC-TAGCGATCTCCGCCGGAGCTCCGGGGATTTT 899
||| || |||||| | | || |||| | |||||||| ||||||| || |||| |||| |
Sbjct 997 CTG-CTTAGTGAAATCCA-CGCGACA-CATAGCGATCACCGCCGGTGCGCCGGAGATTCT 1053
Query 900 AATCGACCGTCTCGCGGCGGATTTCGATAGGTGTGATACGGAGCGAGGTTTAGCGACAGT 959
||| ||| | ||||||||||||||||| ||||| || || ||||| | |||||||| ||
Sbjct 1054 AATAGACAGACTCGCGGCGGATTTCGACAGGTGCGACACAGAGCGTGCCTTAGCGACGGT 1113
Query 960 GGAGCTTCTTTGCCGATTACCAGAAGGATGTGCTGCGTTTGGTGAGCATGCTTTGACGGT 1019
|||||| || ||||||| || |||||||| || ||||| || ||||| ||||| |||||
Sbjct 1114 GGAGCTACTCTGCCGATCGCCGGAAGGATGCGCCGCGTTCGGAGAGCACGCTTTAACGGT 1173
Query 1020 GCCGCTAATGGTGAAGACGATATTAAGAGTTTCAGATAGAGCGACGGAGTACGCGGCGGG 1079
|||| | ||||||| |||||||| |||||||| ||| | ||||||||||||||||||||
Sbjct 1174 GCCGTTGCTGGTGAAAACGATATTGAGAGTTTCGGATCGCGCGACGGAGTACGCGGCGGG 1233
Query 1080 AGCGTTGTT-G-GCTTTATGTACGGCGGAGGAACGGTGTAGAGATGAAGCTGCGGCGGCG 1137
|||||||| | ||||| |||| ||||||||| |||| | || ||||| |||||||||
Sbjct 1234 GGCGTTGTTAGCGCTTT--GTACAGCGGAGGAAAGGTGGCGGGAGGAAGCGGCGGCGGCG 1291
Query 1138 GGATTGGTGACGCAGTTGTTGCTTC-TGGTGCAGAGTGATTGTACGGAGAGAGCGAAGA- 1195
||| ||||| ||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 1292 GGAGTGGTGGTACAGTTGTTG-TTGATGGTGCAGAGTGAGTGTACGGAGAGAGCGAAGAA 1350
Query 1196 GAAAAGCTCAGATGCTTT-TGAAGCTTCTCAGAGACTCTTGGCCTGAC 1242
|||| || |||| | || |||||||||| ||||| || |||||||||
Sbjct 1351 GAAA-GCACAGAAG-TTACTGAAGCTTCTGAGAGATTCATGGCCTGAC 1396
> Ahg946807 jgi|Araly1|946807|scaffold_703036.1
Length=503
Score = 501 bits (271), Expect = 5e-141
Identities = 337/368 (92%), Gaps = 7/368 (2%)
Strand=Plus/Plus
Query 139 CAAACTTACGACCGAACCAGCATCGACTCATGGATCGCTATGGGCAA-CACCACTTGTCC 197
||||||||||||||||||| ||||||||||||||||| || |||||| | || |||||||
Sbjct 51 CAAACTTACGACCGAACCAACATCGACTCATGGATCGGTAAGGGCAATC-CCCCTTGTCC 109
Query 198 AGTCACACGTGTCGCTCTCTCCGACT-TCACTCTCATCCCTAACCACACTCTCCGCCGTC 256
| ||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 110 ATTCACACGGGTCGCTCTCTCCGA-TCTCACTCTCATCCCTAACCACACTCTCGGCCGTC 168
Query 257 TTATCCAAGAATGGTGCGTCGCTAACCGCTCTAACGGCGTCGAACGGATTCCTACACCTA 316
|||||||||||||||| |||| ||| ||||||||||| || |||||||||||||| || |
Sbjct 169 TTATCCAAGAATGGTGTGTCGATAATCGCTCTAACGGTGTTGAACGGATTCCTACTCCGA 228
Query 317 AACAACCGGCGGATCCAATCTCCGTTAGGTCACTTCTCAGTCAAGCATCCGCAATTACCG 376
|||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 229 AACAACCGGCAGATCCAATCTCCGTTAGGTCTCTTCTCAGTCAAGCCTCCGCAATTTCCG 288
Query 377 GAACTCACGTCTCTGTTCGTTCACGCGCCGCCGCTATTCGTCGTTTGAGAGGATTAGCTA 436
||||||||| ||||||||| |||||||||||||| ||| |||||||||||| ||||||||
Sbjct 289 GAACTCACGCCTCTGTTCGCTCACGCGCCGCCGCCATTTGTCGTTTGAGAGAATTAGCTA 348
Query 437 GAGATAGTGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGGGAGATTTTGGTGA 496
||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 349 GAG--A-TGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGAGAGATTTTGGTGA 405
Query 497 GGATTTTG 504
||||||||
Sbjct 406 GGATTTTG 413
Score = 84.2 bits (45), Expect = 2e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 563 TTTTGGTTTTATTGCATATGACGGAGACGGAGTGTGAAGCTGTTGCGTCGG 613
|||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 409 TTTTGGTTTTATTGCATATGACGGAGACAGAGTGTGAAGCTCTTGCGTCGG 459
> Ahg951771 jgi|Araly1|951771|scaffold_15800002.1
Length=722
Score = 496 bits (268), Expect = 3e-139
Identities = 336/368 (91%), Gaps = 7/368 (2%)
Strand=Plus/Plus
Query 139 CAAACTTACGACCGAACCAGCATCGACTCATGGATCGCTATGGGCAA-CACCACTTGTCC 197
||||||||||||||||||| ||||||||||||||||| || |||||| | || |||||||
Sbjct 51 CAAACTTACGACCGAACCAACATCGACTCATGGATCGGTAAGGGCAATC-CCCCTTGTCC 109
Query 198 AGTCACACGTGTCGCTCTCTCCGACT-TCACTCTCATCCCTAACCACACTCTCCGCCGTC 256
| ||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 110 ATTCACACGGGTCGCTCTCTCCGA-TCTCACTCTCATCCCTAACCACACTCTCGGCCGTC 168
Query 257 TTATCCAAGAATGGTGCGTCGCTAACCGCTCTAACGGCGTCGAACGGATTCCTACACCTA 316
|||||||||||||||| |||| ||| ||||||||| | || |||||||||||||| || |
Sbjct 169 TTATCCAAGAATGGTGTGTCGATAATCGCTCTAACAGTGTTGAACGGATTCCTACTCCGA 228
Query 317 AACAACCGGCGGATCCAATCTCCGTTAGGTCACTTCTCAGTCAAGCATCCGCAATTACCG 376
|||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 229 AACAACCGGCAGATCCAATCTCCGTTAGGTCTCTTCTCAGTCAAGCCTCCGCAATTTCCG 288
Query 377 GAACTCACGTCTCTGTTCGTTCACGCGCCGCCGCTATTCGTCGTTTGAGAGGATTAGCTA 436
||||||||| ||||||||| |||||||||||||| ||| |||||||||||| ||||||||
Sbjct 289 GAACTCACGCCTCTGTTCGCTCACGCGCCGCCGCCATTTGTCGTTTGAGAGAATTAGCTA 348
Query 437 GAGATAGTGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGGGAGATTTTGGTGA 496
||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 349 GAG--A-TGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGAGAGATTTTGGTGA 405
Query 497 GGATTTTG 504
||||||||
Sbjct 406 GGATTTTG 413
Score = 333 bits (180), Expect = 2e-90
Identities = 237/264 (90%), Gaps = 5/264 (2%)
Strand=Plus/Plus
Query 673 GTTAACGCCGCCGCGTTGATTGAGATGGTGTTGACCGGAGCGAAATCCATGGATCTGAAA 732
||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||
Sbjct 453 GTTAACGGCGCCGCGTTGATTGAGATGGTGTTGACCGGATCGAAATTGATGGATCTAAAA 512
Query 733 TTGATCATTTCCGGATCTGATTCGATATTCGAAGGCGTTCTCGATCTTCTCAAGAATCCG 792
|||| ||||| ||||| ||||| || || ||||||||||||||||||||||||| ||
Sbjct 513 CTGATAATTTCTGGATCCGATTCAATTTTTGAAGGCGTTCTCGATCTTCTCAAGATTCTT 572
Query 793 ATTTCATCGCGGCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTG 852
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 573 ATTTCATCGCGGCGAGCTTTGCAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTG 632
Query 853 AAACAAACGAGACATCTAGCGATCTCCGCCGGAGCTCCGGGGATTTTAATCGACCGTCTC 912
||||||| || |||||||||||||||| ||||||||||||| ||||||||||||| |
Sbjct 633 AAACAAAAGAAACATCTAGCGATCTCCACCGGAGCTCCGGGAATTTTAATCGACCAT--- 689
Query 913 GCGGCGGATTTCGATAGGTGTGAT 936
| | ||||||| ||||||||||||
Sbjct 690 G-G-CGGATTTTGATAGGTGTGAT 711
Score = 73.1 bits (39), Expect = 5e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 563 TTTTGGTTTTATTGCATATGACGGAGACGGAGTGTGAAGCTGTTG 607
|||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 409 TTTTGGTTTTATTGCATATGACGGAGACAGAGTGTGAAGCTCTTG 453
> Ahg930537 jgi|Araly1|930537|scaffold_302994.1
Length=332
Score = 414 bits (224), Expect = 7e-115
Identities = 287/317 (91%), Gaps = 5/317 (2%)
Strand=Plus/Plus
Query 620 GTCGGGTCGGGTTTATGACCCGATTGTTGTTTGATTCTTCGATTGAAATTAGGGTTAACG 679
|||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 8 GTCGGGTCGGGTGTATGACCCGGTGGTTGTTTGATTCTTCGATTGAAATTAAGGTTAACG 67
Query 680 CCGCCGCGTTGATTGAGATGGTGTTGACCGGAGCGAAATCCATGGATCTGAAATTGATCA 739
||||||||||||||||||||||||||||||| |||||| |||||||| ||| |||| |
Sbjct 68 GCGCCGCGTTGATTGAGATGGTGTTGACCGGATCGAAATTGATGGATCTAAAACTGATAA 127
Query 740 TTTCCGGATCTGATTCGATATTCGAAGGCGTTCTCGATCTTCTCAAGAATCCGATTTCAT 799
|||| ||||| ||||| || || ||||||||||||||||||||||||| || |||||||
Sbjct 128 TTTCTGGATCCGATTCAATTTTTGAAGGCGTTCTCGATCTTCTCAAGATTCTTATTTCAT 187
Query 800 CGCGGCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTGAAACAAA 859
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 CGCGGCGAGCTTTGCAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTGAAACAAA 247
Query 860 CGAGACATCTAGCGATCTCCGCCGGAGCTCCGGGGATTTTAATCGACCGTCTCGCGGCGG 919
|| |||||||||||||||| ||||||||||||| ||||||||||||| | | | |||
Sbjct 248 AGAAACATCTAGCGATCTCCACCGGAGCTCCGGGAATTTTAATCGACCAT---G-G-CGG 302
Query 920 ATTTCGATAGGTGTGAT 936
|||||||||||||||||
Sbjct 303 ATTTCGATAGGTGTGAT 319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52869260060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5