BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49820.1
Length=1577
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474113 jgi|Araly1|474113|fgenesh2_kg.1__4067__AT1G49820.1 2372 0.0
> Ahg474113 jgi|Araly1|474113|fgenesh2_kg.1__4067__AT1G49820.1
Length=1547
Score = 2372 bits (1284), Expect = 0.0
Identities = 1471/1557 (94%), Gaps = 30/1557 (2%)
Strand=Plus/Plus
Query 1 ATTGGTCACTGATATGAAACAAAACC-AAACTAGAATC-TTTGACAAAAATCGAACCTTT 58
||||| |||||| ||||||||||||| ||| |||||| |||| ||||||||||||||||
Sbjct 1 ATTGGCCACTGACATGAAACAAAACCAAAAGAAGAATCTTTTG-CAAAAATCGAACCTTT 59
Query 59 AAAACTCAGATTTTATCTCTCTTCAGTCTCCACGCTGCTTGAAACTGAAGCAGAGAAGCA 118
|||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 60 AAAACTCAGA-TTTATCTCTC--CAGTCTCCACACTGCTTGAAACTGAAGCAGAGAAGCA 116
Query 119 AAGA-GATGTCTTTTGAGGAGTTTACGCCGTTAAACGAGAAGTCTCTTGTAGACTACATC 177
|| | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 117 AA-ACGATGTCTTTTGAGGAGTTTAAGCCATTAAACGAGAAGTCTCTTGTAGACTACATA 175
Query 178 AAGTCAACACCTGCTCTCTCTTCCAAGATCGGAGCCGACAAGTCCGATGATGATTTGGTT 237
||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 176 AAGGCAACGCCTGCTCTCTCTTCCAAGATCGGAGCCGACAAGTCC---GATGATTTGGTT 232
Query 238 ATCAAAGAAGTTGGAGATGGCAATCTCAATTTCGTTTTCATCGTTGTTGGATCCTCTGGT 297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 233 ATCAAAGAAGTTGGAGATGGCAATCTCAATTTCGTTTTCATCGTTGTCGGATCCTCTGGT 292
Query 298 TCTCTTGTCATCAAACAGGCTCTTCCATATATTCGCTGTATCGGTGAATCATGGCCAATG 357
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 293 TCTCTTGTCATCAAACAGGCACTTCCATATATTCGCTGTATCGGTGAATCGTGGCCAATG 352
Query 358 ACGAAAGAAAGAGCTTATTTTGAAGCAACAACTTTGAGAAAGCATGGAAATTTATCACCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 ACGAAAGAAAGAGCTTATTTTGAAGCAACAACTTTGAGAAAGCATGGAAATTTATCACCT 412
Query 418 GATCATGTTCCTGAAGTCTACCATTTTGACAGAACAATGGCGTTGATTGGAATGAGATAC 477
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 413 GATCATGTTCCTGAAGTCTACCATTTTGACAGAACAATGGCGTTGATCGGAATGAGATAC 472
Query 478 CTTGAGCCTCCTCATATCATTCTCCGCAAAGGACTCATTGCTGGGATTGAGTATCCTTTC 537
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 473 CTCGAGCCTCCTCATATCATTCTCCGTAAAGGACTCATTGCCGGGATTGAGTATCCTTTC 532
Query 538 CTCGCAGACCACATGTCTGATTACATGGCGAAGACTCTCTTCTTCACTTCTCTCCTCTAT 597
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 533 CTTGCAGACCACATGTCTGATTACATGGCGAAGACTCTCTTCTTCACTTCGCTCCTCTAT 592
Query 598 CACGATACCACAGAGCACAGAAGAGCAGTAACCGAATTTTGTGGTAATGTGGAGTTATGC 657
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 593 CACGATACCACAGAGCACAGAAGAGCAGTAACTGAATTTTGTGGTAATGTGGAGTTATGC 652
Query 658 CGATTAACGGAGCAAGTTGTGTTTTCGGACCCATATAGAGTTTCCACATTTAATCGTTGG 717
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 653 CGATTAACGGAGCAAGTTGTGTTTTCGGACCCATATAGAGTTTCTACATTTAATCGCTGG 712
Query 718 ACTTCACCTTATCTTGATGATGATGCTAAGGCTGTGCGCGAAGACAGTGCCTTGAAGCTC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 ACTTCACCTTATCTTGATGATGATGCTAAGGCTGTGCGCGAAGACAGTGCCTTGAAGCTC 772
Query 778 GAAATCGCAGAGCTAAAATCGATGTTCTGTGAAAGAGCTCAAGCTTTAATACATGGTGAT 837
|| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 773 GAGATCGCAGAGCTTAAATCGATGTTCTGTGAAAGAGCTCAAGCTCTAATACATGGTGAT 832
Query 838 CTTCATACTGGTTCTGTCATGGTTACTCAAGATTCAACGCAAGTTATAGATCCAGAGTTT 897
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 833 CTTCACACTGGTTCTGTCATGGTTACTCAAGATTCGACACAAGTTATAGATCCAGAGTTT 892
Query 898 TCGTTCTA-TGGACCGATGGGTTTCGATATTGGCGCTTATCTTGGTAACTTGATACTAGC 956
||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 893 TCGTT-TATTGGACCGATGGGTTTCGATATTGGAGCTTATCTTGGTAACTTGATACTAGC 951
Query 957 TTTCTTTGCACAAGATGGACACGCCACTCAGGAAAATGATCGAAAAGAATACAAGCAGTG 1016
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 952 TTTCTTTGCACAAGATGGACACGCCGCTCAGGGAAATGATCGAAAAGAATACAAGCAGTG 1011
Query 1017 GATCTTGAGAACCATTGAGCAAACTTGGAATTTGTTTAACAAAAGGTTCATTGCGCTATG 1076
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1012 GATCTTGAGAACCATTGAGCAAACTTGGGATTTGTTTAACAAAAGGTTCATTGCGCTATG 1071
Query 1077 GGATCAAAACAAAGATGGACCAGGCGAAGCATACCTTGCAGATATCTATAACAATACCGA 1136
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1072 GGATCAAAACAAAGATGGACCCGGCGAAGCATACCTTGCAGATATCTATAACAACCCCGG 1131
Query 1137 GGTTTTGAAGTTTGTTCAAGAAAACTACATGAGGAATTTGTTGCATGACTCACTCGGATT 1196
||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GGTTTTGCAGCTTGCTCAAGAAAACTACATGAGGAATTTGTTGCATGACTCACTCGGATT 1191
Query 1197 CGGCGCTGCAAAGATGATTAGGAGAATTGTGGGAGTGGCACATGTTGAGGACTTTGAATC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 CGGCGCTGCAAAGATGATTAGGAGAATTGTGGGAGTGGCACATGTTGAGGACTTTGAATC 1251
Query 1257 AATCGAAGAAGATAAGCGAAGAGCTATTTGCGAGAGAAGTGCACTCGAGTTTGCGAAGAT 1316
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 1252 AATCGAAGAAGATAAGCGAAGAGCGGTTTGCGAGAGAAGTGCGCTCGAGTTTGCAAAGAT 1311
Query 1317 GCTTCTCAAGGAAAGGAGAAAGTTTAAGAGTATCGGTGAAGTTGTTTCAGCAATTCAACA 1376
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1312 GCTTCTTAAGGAAAGGAGAAAGTTTACTTGTATCGGTGAAGTTGTTTCAGCAATTCAACA 1371
Query 1377 ACAAAGCTAAGACAATTTATAATG---T-T-CTTCTGCTGAAGTTCTTGAAAGTCTTGTT 1431
||||||||||||| ||||||||| | | |||||||| ||||||||||||||||||||
Sbjct 1372 TCAAAGCTAAGACATTTTATAATGAAATGTTCTTCTGCTAAAGTTCTTGAAAGTCTTGTT 1431
Query 1432 TTG-ATCTTGGGAGTTAATTGGCAAGAAAAGTATCACAATGCTGC--TTATCACATGGAT 1488
||| ||||||| ||||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 1432 TTGGATCTTGG-AGTTAATTGCCAAGAAAAATATCACAATGCTGGAGTTATCACATGGAT 1490
Query 1489 TTGTAATTTAGTGGTTTGTG-----GTGGTGATGATG---GTATTCAAATGCATTTT 1537
|||||||| |||||||||| |||||| ||||| |||||||||||||||||
Sbjct 1491 ATGTAATTTGGTGGTTTGTGCCTTTGTGGTGGTGATGATAGTATTCAAATGCATTTT 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59077969995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5