BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G49900.1 Length=2954 Score E Sequences producing significant alignments: (Bits) Value Ahg314403 jgi|Araly1|314403|fgenesh1_pm.C_scaffold_1003183 774 0.0 > Ahg314403 jgi|Araly1|314403|fgenesh1_pm.C_scaffold_1003183 Length=2508 Score = 774 bits (419), Expect = 0.0 Identities = 674/790 (85%), Gaps = 46/790 (6%) Strand=Plus/Plus Query 1973 atgatgatgatgttgatCCTTCCTCCAAAGACATACGTTTAGAA--GA--AGAAAACG-A 2027 |||||||||||| |||| |||||| | | ||| | |||||||| || | || | | Sbjct 1757 ATGATGATGATGATGATTCTTCCTTTACACACACAGGTTTAGAATCGATCCGGCAA-GAA 1815 Query 2028 GTGTGAAAACAGAGCCGTTATTAGGCCTAGCTTGAATAGTGTAGCACCAAATCAACAGCG 2087 | ||| |||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct 1816 G-AAGAATACAGAGCCGTTATTAGGCCTTGGTTGGTTAGTGTAGCACCAAATCAACAGCG 1874 Query 2088 TTTTGGTGATGATGAAGTTCcttcttcttcttcttctctctCCAAAGATGAAACCGCTGC 2147 ||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||| Sbjct 1875 TTTTGGTGATGATGAAG-T--TTCTTCTTCTTCTTCTCTCTCTGAGGATGAAACCGCTGC 1931 Query 2148 TCTCTGTCCCACACCGCATTCACAAACACAACCGCAATCGCAAACCCAACTGCAAAAGGT 2207 | || | | | | ||| ||| |||||||| | ||| || | Sbjct 1932 TATC--T--------G---T--C--ACA-AACGGCAATCGC--A---AAC-GC---A--- 1961 Query 2208 GACCCAACCTCAAACGCAGATGCTGCCTAAGTCTGAT-TC-TTACCAGTGCAACGTCTGT 2265 |||||||||||| | ||||||||||||||||||||| | ||| |||||| ||||||| Sbjct 1962 CACCCAACCTCAACCACAGATGCTGCCTAAGTCTGATCCCTTTA--AGTGCAGCGTCTGT 2019 Query 2266 GGAAGAGAGTTGCCTTCATATCAAGCTTTAGGTGGTCACAAGGCTAGCCACAGGACTAAG 2325 |||| |||||| ||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 2020 GGAAAAGAGTTTCCTTCATATCAAGCTTTAGGTGGTCACAAGGCTGGCCACAGGGTTAAG 2079 Query 2326 CCGCCTGTTGAAAACGCAACTGGGGAAAAAATGCGGCCAAAGAAGTTGGCCCCATCTGGG 2385 ||||||||||||||||||||||| ||||||| |||||||||| ||| || ||||||||| Sbjct 2080 CCGCCTGTTGAAAACGCAACTGGAGAAAAAACACGGCCAAAGAGGTTAGCTCCATCTGGG 2139 Query 2386 AAAATCCACAAGTGTTCTATTTGTCACCGAGAGTTTTCAACGGGACAATCCCTCGGTGGA 2445 |||||||||||||||||||||||||| || |||| ||||||||||||||||||| ||| Sbjct 2140 AAAATCCACAAGTGTTCTATTTGTCATAGATTGTTTCCAACGGGACAATCCCTCGGGGGA 2199 Query 2446 CACAAACGCCTTCATTACGAAGGAGTTCTCCGCGGTCACAAACGCAGCCAGGA-GAAGGA 2504 ||||||||||||||||||||||| |||||| |||||||||||||||||||||| | |||| Sbjct 2200 CACAAACGCCTTCATTACGAAGGTGTTCTCAGCGGTCACAAACGCAGCCAGGACG-AGGA 2258 Query 2505 GGCTGTTTCCCAAGGAGACAAGTTGAGTCCTAGTGGTAATGGGAGTGTTGTAACACATGT 2564 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2259 GGCTGGTTCCCAAGGAGACAAGTCGAGTCCTAGTGGTAATGGGAGTGTTGTAACACATGT 2318 Query 2565 ACCTGACCCAAAGCAGAGCCGAAAGGGATTGATAGTTATTAATAAAGTGCCATCGCCGGA 2624 | |||||||||||||||||| |||||||||||||| |||||||| |||||||||||| || Sbjct 2319 ATCTGACCCAAAGCAGAGCCTAAAGGGATTGATAGATATTAATACAGTGCCATCGCCAGA 2378 Query 2625 GTTTAATGATCCCGGCGACAAAGACATATTGGAGGGTGAAAGTGCATTGTTAGCAAACAA 2684 ||||||||| ||||| |||||||||||| |||||| |||||||||||||||||||||||| Sbjct 2379 GTTTAATGAACCCGGGGACAAAGACATAGTGGAGGTTGAAAGTGCATTGTTAGCAAACAA 2438 Query 2685 GCTTGAACAAGATAGAGGAATTACCAGTACTCGCATGATTAACGgtttgaaattttttaa 2744 |||| ||||||| ||||||||||||| |||| || ||| || ||||| | |||||||| Sbjct 2439 GCTTCAACAAGAAAGAGGAATTACCAATACTAACAGGATAAAGGGTTTTCATTTTTTTAA 2498 Query 2745 ctttctgtaa 2754 |||| ||||| Sbjct 2499 CTTTATGTAA 2508 Score = 459 bits (248), Expect = 7e-128 Identities = 342/387 (88%), Gaps = 8/387 (2%) Strand=Plus/Plus Query 555 GGCGCCTCCTAAGTCTGATTTGTTCAAGTGTAGCATCTGTGAAAAAGTGTTTACTTCGTA 614 |||||| || |||| |||||||||| ||||||| |||||| ||||| |||||||||||| Sbjct 522 GGCGCCGCCGAAGTTTGATTTGTTCGAGTGTAGTGTCTGTGGAAAAGGGTTTACTTCGTA 581 Query 615 TCAAGCTTTAGGTGGTCACAAAGCTAGCCACAGTATTAAGGCCG-CGCAA---C-T-T-G 667 |||||| |||||||||||||| || |||||||| |||| || | | ||| | | | | Sbjct 582 TCAAGCATTAGGTGGTCACAAGGCCAGCCACAGGGTTAA-GCAGCCACAACCGCTTATGG 640 Query 668 AAAACGCAGGCGCAGACGCTGGAGAAAAAACGCGGTCAAAGATGTTGTCACCGTCTGGGA 727 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 641 AAAACGCAGGCGCAGACGCTGGAGAGAAAACGCGGTCAAAGATGTTGTCTCCGTCTGGGA 700 Query 728 AAATCCACAAGTGTGATATATGTCATGTTCTGTTTCCCACCGGACAAGCCCTAGGTGGAC 787 ||||||||||||||||||||||||||||| ||||| |||| |||||||| || ||||||| Sbjct 701 AAATCCACAAGTGTGATATATGTCATGTTGTGTTTGCCACGGGACAAGCACTTGGTGGAC 760 Query 788 ACAAACGCCGTCACTACGAAGGCCTTCTCGGCGGTCACAAACGCGGTAATGACGAGGCTG 847 ||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| || Sbjct 761 ACAAACGCCGTCACTACGAAGGCGTTCTCGGCGGTCACAAACACGGTAATGCCGAGGTTG 820 Query 848 TTCTCAAGTTGAGTCCCAATAGCAATAAGAGCGTTGTAACAAAAGTGTTAGATGCAGAAC 907 |||||||||| |||||||||| ||| |||| |||||||||||||||||||| ||| || Sbjct 821 TTCTCAAGTTAAGTCCCAATAAAAATGGGAGCATTGTAACAAAAGTGTTAGATCCAGGAC 880 Query 908 AGAGTTTAAGGGCAAGTGACAACATTC 934 ||||||||| || |||||||||| ||| Sbjct 881 AGAGTTTAATGGTAAGTGACAACGTTC 907 Score = 283 bits (153), Expect = 5e-75 Identities = 212/238 (89%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 1006 AATGTGTTGGATCTAAAGCTGAGCCTAGGGGAAAGTGAC-G-G----CG---GTCACAAA 1056 ||||||||||||||||||||||||||| | ||||||||| | | || || ||||| Sbjct 919 AATGTGTTGGATCTAAAGCTGAGCCTAAGTGAAAGTGACGGAGTTCTCGTCAGTGACAAA 978 Query 1057 GACAGTCAGGACGAGGTTGTT-GTTCATGAAGACAAGTGTAGTCCTAGTAGCAATGGGAG 1115 | |||||||||| |||||||| | | | ||||||||||||||||||||||| |||||||| Sbjct 979 GGCAGTCAGGACCAGGTTGTTCG-TGAGGAAGACAAGTGTAGTCCTAGTAGTAATGGGAG 1037 Query 1116 TATTGTAACAAATGTGTCCGATCCAGAGCAGAGCGTAAGGAGATTGATAGATCTTAATAA 1175 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 1038 TATTGTAACAAATGTGTCGGATCCAGAGCAGAGCCTAAGGAGATTGATAGATCTTAATAA 1097 Query 1176 CCCGCCTTCACTCG-AGTTTGATCAATCTAGAGGCGGAGACGTGGAGGAAGTTGAAAA 1232 |||||| |||| || |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1098 CCCGCCGTCAC-CGGAGTTTGATGAATCTGGAGGCGGAGACGTGGAGGAAGTTGAAAA 1154 Score = 270 bits (146), Expect = 4e-71 Identities = 377/476 (79%), Gaps = 65/476 (14%) Strand=Plus/Plus Query 1467 AGACGAAGACGATGAGTGTGTTGAGATTGGGTTGGGGAGTTGTGAACAAGAGCCAATACA 1526 ||| ||||||||||||||||||||||||||||||| ||||||||||||| || |||||| Sbjct 1359 AGAAGAAGACGATGAGTGTGTTGAGATTGGGTTGGAGAGTTGTGAACAACAGTCAATACC 1418 Query 1527 AGAGCGTTTTGGTGATGATAAAGATCCTTCTTCGGATCACGGAAACGTAGAATCTATCCG 1586 ||||||||||||| ||||||||||||||||||||||||| || | ||||||| ||||| Sbjct 1419 AGAGCGTTTTGGTAATGATAAAGATCCTTCTTCGGATCAAAGAGTCCTAGAATCGATCCG 1478 Query 1587 GCTAGAAGAAGAAGACGCCGTTTTGTTTGAGCCTTGGTTGAAAAGCAGGTTGAAAAGCAG 1646 || ||||||||| |||||||||||| ||||||| ||||||||| | | ||| Sbjct 1479 GCGAGAAGAAGACGACGCCGTTTTGATTGAGCCCTGGTTGAAA--C-G---------CAG 1526 Query 1647 GGACAGGGAACAGTCTCAACGACAAGGTTTTGGTGAATACGAAGATTGTTTCTCGGAACG 1706 ||| | | ||| |||||||||||||| ||||| ||||||||| |||| |||||| Sbjct 1527 GGA-A-----CTGTCACAACGACAAGGTTTGGGTGACGACGAAGATTCTTTCGCGGAACA 1580 Query 1707 CAGGTTCTTACAAGAAGAAGAAGAAGAGTGTTTTGGTGACGATGAAGATTCTTTCTCGGA 1766 ||| |||||||||| |||||| | |||||||||||||||||||||||||||||||| Sbjct 1581 CAGCTTCTTACAAGTAGAAGA-G-----TGTTTTGGTGACGATGAAGATTCTTTCTCGGA 1634 Query 1767 TCAGATTTCATTCTTGGAATCGAACCGGCTagaagaagaatttgaagaagagaaagaagC 1826 | | | | || | | ||| | | |||||| || ||| |||| ||||| Sbjct 1635 --A--T--C------G-AA-C---C-GGC-A-A-GAAGAA---GA-GAA-AGAA-GAAGC 1667 Query 1827 AGCCCGGTTTTCAAACGACAACGATTTCGTTGAGCTTTTGTTTCAAGGTATTGAACAATC 1886 || |||||||||||||| ||| |||| ||||||||||||| | |||||||||| ||| Sbjct 1668 --CC-GGTTTTCAAACGACGACGTTTTCCTTGAGCTTTTGTTGGATGGTATTGAACGATC 1724 Query 1887 AAAATCAAAACCAAAGCCAAAGTC-TTGTTCTT-AT-T-atgatgatgatgatgat 1938 |||| | | ||||||||| || || ||||| || | ||||||||||||||||| Sbjct 1725 AAAA--A---C-AAAGCCAAA-TCGTTCTTCTTCATCTCATGATGATGATGATGAT 1773 Score = 58.4 bits (31), Expect = 3e-07 Identities = 33/34 (97%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 1442 TAAAAGTGATAGAACCGATCGGGCTAGACGAAGA 1475 |||||||||||||||||||||||||||| ||||| Sbjct 1322 TAAAAGTGATAGAACCGATCGGGCTAGAAGAAGA 1355 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 111528237360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5