BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49970.1
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923431 jgi|Araly1|923431|scaffold_104712.1 1941 0.0
Ahg356151 jgi|Araly1|356151|fgenesh1_pg.C_scaffold_7003324 518 6e-146
Ahg474126 jgi|Araly1|474126|fgenesh2_kg.1__4080__AT1G49960.1 470 2e-131
> Ahg923431 jgi|Araly1|923431|scaffold_104712.1
Length=1206
Score = 1941 bits (1051), Expect = 0.0
Identities = 1154/1204 (96%), Gaps = 5/1204 (0%)
Strand=Plus/Plus
Query 132 GGTTGCTAAATCGAAGATGGCGACTGCTCTGGTTTCTCCTCTTACTTCACAACTCAACCA 191
||| ||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 5 GGTAGCTAAATCGGAGATGGCGACTTCTCTGGTCTCTCCTCTTACTTCACAGCTCAACCA 64
Query 192 TGAAGCTGTCTGTTCCAAGTTTGTG-TTACCCAAATCGCCGTTCATGTCGGGATCTAAGC 250
|||||||||||||||||||| |||| || |||||||| ||||||||||| ||||||||||
Sbjct 65 TGAAGCTGTCTGTTCCAAGTCTGTGCTT-CCCAAATCACCGTTCATGTCTGGATCTAAGC 123
Query 251 TCTTTTCATCGAACATGCCTTGCTCTACTGTTCCTAGACGCACAAGAAGATCACACTGCT 310
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 124 TCTTTTCATCGAACATGCCTTGCTCTACTGTTCCTAGACGTACAAGGATATCACACTGCT 183
Query 311 TTGCTTCTGCTAAAGATATGAGCTTTGACCATATCCCTAAACAATTTCGTGGAGACAATC 370
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 184 TTGCTTCTGCTAAAGATATGAGCTTTGACCATATCCCTAAACAATTTCGAGGAGACAATC 243
Query 371 TCAAAGACGGAGTGATGCAGAACTTCAAGAACGTACCACAATATTTTTACGGGCTTAATT 430
|||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 244 TCAAAGACGGAGTGGTGCAGAACTTCAAGAATGTACCGCAATATTTTTACGGGCTGAATC 303
Query 431 CAGCTCAAATGGATATGTTCATGACAGAAGATAGCCCTGTCCGTAGGCAAGCGGAAAAAG 490
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 304 CAGCTCAAATGGATATGTTCATGACGGAGGATAGCCCTGTCCGTAGGCAAGCGGAAAAAG 363
Query 491 TTACAGAGGAAAGCATCTCGTCTAGAA-ATAACTATTTGAACAATGGAGGAATATGGAGT 549
||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||||
Sbjct 364 TTACAGAGGAAAGCATCTCGTCTAGAAGA-AATTATTTGGACAATGGAGGAATATGGAGT 422
Query 550 ATGTCCGGTATGAATGCAGCAGATGCTAGAAGATATAGCATGAGTGTCCAGATGTACAGA 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ATGTCCGGTATGAATGCAGCAGATGCTAGAAGATATAGCATGAGTGTCCAGATGTACAGA 482
Query 610 GGTGGAGGTGGCGGCGGAGGATCTGAAAGACCAAGAACTGCTCCTCCAGATTTGCCTTCT 669
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GGTGGAGGTGGCGGAGGAGGATCTGAAAGACCAAGAACTGCTCCTCCAGATTTGCCTTCT 542
Query 670 TTGCTATTGGATGCTCGCATATGCTACCTTGGCATGCCAATCGTACCTGCAGTTACTGAG 729
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 543 TTGCTATTGGATGCTCGGATATGCTACCTTGGAATGCCAATCGTACCTGCAGTTACTGAG 602
Query 730 TTACTCGTTGCTCAATTTATGTGGTTAGACTATGATAACCCAACAAAGCCCATCTACTTA 789
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 603 TTACTCGTTGCTCAATTTATGTGGCTAGATTATGATAACCCAACAAAGCCCATCTACCTA 662
Query 790 TATATAAATTCACCCGGGACCCAGAATGAGAAGATGGAAACTGTTGGATCAGAAACAGAG 849
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 663 TATATAAATTCACCCGGGACCCAGAATGAGAAGATGGAAACTGTTGGGTCAGAAACAGAG 722
Query 850 GCTTATGCCATAGCCGATACTATTTCTTATTGCAAATCAGATGTATACACTATCAATTGT 909
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 723 GCTTATGCCATAGCTGATACCATCTCTTATTGCAAATCAGATGTATACACTATCAATTGT 782
Query 910 GGCATGGCTTTTGGTCAAGCAGCAATGCTTCTTTCTCTCGGGAAAAAAGGTTATCGTGCC 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GGCATGGCTTTTGGTCAAGCAGCAATGCTTCTTTCTCTCGGGAAAAAAGGTTATCGTGCC 842
Query 970 GTACAACCACATTCATCAACAAAATTATATCTGCCAAAAGTAAACAGATCGAGTGGAGCT 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GTACAACCACATTCATCAACAAAATTATATCTGCCAAAAGTAAACAGATCGAGTGGAGCT 902
Query 1030 GCCATAGACATGTGGATAAAGGCCAAGGAACTTGATGCAAATACCGAGTACTACATCGAG 1089
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 903 GCCATAGACATGTGGATAAAGGCCAAGGAACTTGATGCAAATACTGAGTACTACATCGAG 962
Query 1090 CTGTTAGCTAAGGGAACAGGGAAATCCAAAGAGCAGATCAACGAGGACATCAAGCGACCT 1149
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTGTTAGCGAAGGGAACAGGGAAATCCAAAGAGCAGATCAACGAGGACATCAAGCGACCT 1022
Query 1150 AAATATCTCCAAGCTCAAGCAGCCATTGACTATGGAATTGCAGACAAGATAGCTGACTCG 1209
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1023 AAATATCTCCAAGCACAAGCAGCTATTGACTATGGAATTGCAGACAAGATAGCGGACTCG 1082
Query 1210 CAGGACAGTTCTTTCGAGAAACGGGATTACGATGGGACCCTTGCCCAGAGAGCTATGAGA 1269
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 1083 CAGGATAGTTCCTTCGAGAAACGGGATTATGATGGGACTCTTGCCCAGAGAGCCATGAGA 1142
Query 1270 CCTGGAGGAGGCAGTCCAGCAGCTCCAGCCGGACTAAGATGATCAATTCCCACCAGAAAG 1329
|||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1143 CCTGGAGGAGGCAGCCCAACAGCTCCAGCCGGACTAAGATGATCAATTCCCATTAGAAA- 1201
Query 1330 AAAG 1333
||||
Sbjct 1202 AAAG 1205
> Ahg356151 jgi|Araly1|356151|fgenesh1_pg.C_scaffold_7003324
Length=1779
Score = 518 bits (280), Expect = 6e-146
Identities = 312/327 (95%), Gaps = 4/327 (1%)
Strand=Plus/Plus
Query 148 ATGGCGACTGCTCTGGTTTCTCCTCTTACTTCACAACTCAACCATGAAGCTGTCTGTTCC 207
||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGACTTCTCTGGTCTCTCCTCTTACTTCACAGCTCAACCATGAAGCTGTCTGTTCC 60
Query 208 AAGTTTGTG-TTACCCAAATCGCCGTTCATGTCGGGATCTAAGCTCTTTTCATCGAACAT 266
||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTTCGTGCTT-CCCAAATCACCGTTCATGTCGGGATCTAAGCTCTTTTCATCGAACAT 119
Query 267 GCCTTGCTCTACTGTTCCTAGACGCACAAGAAGATCACACTGCTTTGCTTCTGCTAAAGA 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCCTTGCTCTACTGTTCCTAGACGCACAAGAAGATCACACTGCTTTGCTTCTGCTAAAGA 179
Query 327 TATGAGCTTTGACCATATCCCTAAACAATTTCGTGGAGACAATCTCAAAGACGGAGTGAT 386
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 TATGAGCTTTGACCATATCCCTAAACAATTTCGAGGAGACAATCTCAAAGACGGAGTGAT 239
Query 387 GCAGAACTTCAAGAAC-GTACCACAATATTTTTACGGGCTTAATTCAGCTCAAATGGATA 445
|||||||||| ||| | ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 240 GCAGAACTTCCAGA-CTGTACCGCAATATTTTTACGGGCTTAATCCAGCTCAAATGGATA 298
Query 446 TGTTCATGACAGAAGATAGCCCTGTCC 472
|||||||||| || |||||||||||||
Sbjct 299 TGTTCATGACGGAGGATAGCCCTGTCC 325
> Ahg474126 jgi|Araly1|474126|fgenesh2_kg.1__4080__AT1G49960.1
Length=1781
Score = 470 bits (254), Expect = 2e-131
Identities = 307/330 (93%), Gaps = 14/330 (4%)
Strand=Plus/Minus
Query 1361 CTGGAATATGTAGCTCTTACAATCTATAAGCAAACACATGTGGTAGTAACATACAAAAAA 1420
||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1781 CTGGAATATGTAGCTTTTACAATCTATAAGCAAACACATGTTGTAGTAACATAC-AAAAA 1723
Query 1421 GTGTTGGCAAAAAGGG----AAATAACATCAAAAGTTATCTAGGTGGAAAGTTATTTGTA 1476
|||||||||||||||| ||| ||||||||||||| |||||| |||||||||||||||
Sbjct 1722 GTGTTGGCAAAAAGGGAAAAAAAAAACATCAAAAGTTCTCTAGGCGGAAAGTTATTTGTA 1663
Query 1477 TTATACATGTATCTCTCTAGATGCAGGTTTCTCACACTCTGAAAAAACCGAGTTTTGGGT 1536
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1662 TTATACATGTATCTCTCTAGATGCAGGTTTCTCACACTCTGAAAAAACCTAGTTTTGGGT 1603
Query 1537 TTTCGGGATTTTCAGAAT-----GAA-G--GG-AAGAATCGGTTGAGGTTGTAAGGCAAT 1587
|||||||||||||||||| ||| | || |||||||||||||||||||||||||||
Sbjct 1602 TTTCGGGATTTTCAGAATTTTCAGAAAGAAGGGAAGAATCGGTTGAGGTTGTAAGGCAAT 1543
Query 1588 GCGTAAAATTCTTCTGTTCGAGTATCAGTGTGGTAGACTCTGAATTTCTCCCACCAATGT 1647
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 GCGTAAAACTCTTCTGTTCGAGTATCAGTGTGGTAGACTCTGAATTTCTCCCACCAATGT 1483
Query 1648 CTTCCGCTGTCTCTCCTCACCGAGGCATGT 1677
||||| |||||||||||||| |||||||||
Sbjct 1482 CTTCCACTGTCTCTCCTCACTGAGGCATGT 1453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62886994495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5