BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50020.1
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474138 jgi|Araly1|474138|fgenesh2_kg.1__4092__AT1G50020.1 1240 0.0
> Ahg474138 jgi|Araly1|474138|fgenesh2_kg.1__4092__AT1G50020.1
Length=871
Score = 1240 bits (671), Expect = 0.0
Identities = 813/876 (93%), Gaps = 31/876 (4%)
Strand=Plus/Plus
Query 8 TATAAAACACAGCTTCCTT-CTT-CTCCTATATATTCATCGGCGACGCCTTGATCATGAT 65
||||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1 TATAAAACACAGCTTCCTTCCTTCCTCCTATATATTCAGCGGCGACGCCTGGATCATGAT 60
Query 66 TCTTTCCGGAAACTGATAAGAGGAACAAAAATGGCTTCTTCTTCTCTGGAGATTGTTAAA 125
||||||||| | |||| ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCTTTCCGGCATCTGA-AAGAGAAACAAAAATGGCTTCTTCTTCTCTCGAGATTGTTAAA 119
Query 126 TTGTGTGGCTCTCCTGTATCGT-TTCCCCGCCATAAATCTCCCATAAAATTGGAATGTAG 184
||||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||
Sbjct 120 TTGTGTGGCTCTCCTGTTTC-TATTCCCCGCCATAAATCTCCCATTAAATTGGAATGTAG 178
Query 185 AAAAAGGGTTTTCAGATTACCCAATTCTAGGAGTTGGCA---TC---GT-C-----TTAG 232
|||||||||| | |||||| || ||||||||| |||||| || || | ||||
Sbjct 179 AAAAAGGGTTCTAAGATTATCCGATTCTAGGACTTGGCATCGTCTTGGTACATGTGTTAG 238
Query 233 GGTTTCTTCATCTGCTCTCAATGGTGGTGATAATCAGTCCAAAGGTGAAGAACCTCCAGA 292
||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 239 GGTTTATTCTTCTGCTCTCAA---CGGTGATAATCAGTCCAAAGGTGAAGAACCTCCAGA 295
Query 293 ATCTTTATTTATGAAAGAATTGAAGAGACGTGGTATGACTCCTACTTCCTTGCTTCAAGA 352
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 296 ATCTTTATTTATGAAAGAATTGAAGAGACGTGGTATGACTCCTACTTCGTTGCTTCAAGA 355
Query 353 CTATGAAGTGGATCAGGATGAGATCAAAACCGGTAAAGAAACCGGAAACAGCTCTAAAAC 412
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 356 CTATGAAGTGGATCAGGATGAGATCAAAACCGATAAAGAAACCGGAAACAGTTCTAAAAC 415
Query 413 GACTGCAACTACTCCGGCCTTCGATAAAAGCTTGTTAAATCAGAGAGAGAGATCTTTGGC 472
|||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 416 GACTGCAACTTCTCCGGCGTTTGATAAAAGCTTGTTAAATCAGAGAGAGAGATCTTTGGC 475
Query 473 TTTAAACAGCGAAGGGCTTGAGGGGTTGATTCCGCGTGCTAGGATCTTGCTGACAATTGG 532
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTTAAACAGTGAAGGGCTTGAGGGGTTGATTCCGCGTGCTAGGATCTTGCTGACAATTGG 535
Query 533 AGGGACTTTCTTCTTGGGCTTTTGGCCATTGATAGTCTTAACTCTCGGCGCCTTCTCTGC 592
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 AGGGACTTTCTTCTTGGGCTTTTGGCCATTGATAGTCCTAACTCTCGGCGCCTTCTCTGC 595
Query 593 TCTTTACCTTTACTTTGGAGCAGATTTCATTCATGATGGAAGTAGAACTCCGGTTTCACC 652
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 596 TCTTTACCTTTACTTTGGAGCAGATTTCGTTCATGATGGAAGTAGAACTCCCGTTTCACC 655
Query 653 ACCACCTTACATCGATCCATATGCTCTGTTGGAGGATGAGAGGATATCAGGGATGGATCC 712
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ACCACCGTACATCGATCCATATGCTCTGTTGGAGGATGAGAGGATATCAGGGATGGATCC 715
Query 713 TCGTCTAAATTAGCAGGCAACAAGTTGTTCT-T-TA-T-TGCATAACTAGT-GTA--GAG 765
|||| |||||||||||||||||||||||||| | || | | |||||||| | ||| |||
Sbjct 716 TCGTGTAAATTAGCAGGCAACAAGTTGTTCTCTATACTCTACATAACTACTAGTATAGAG 775
Query 766 CATATAT-TT-GCTCT-AAGtatatatttttattt-acagcctttccttttatttatttt 821
||||||| || ||||| |||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 776 CATATATATTTGCTCTTAAGTATATATTTTTATTTTACAGTCTTTCCTTTCATTTATTTT 835
Query 822 CCTTACGGTTGTAAAAAGAATCGTTGCTTCTCTATT 857
||||||||||||||||||||||||||||||||||||
Sbjct 836 CCTTACGGTTGTAAAAAGAATCGTTGCTTCTCTATT 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34234379466
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5