BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50140.1
Length=3237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923455 jgi|Araly1|923455|scaffold_104736.1 4841 0.0
Ahg479491 jgi|Araly1|479491|fgenesh2_kg.3__2192__AT3G19740.1 1738 0.0
> Ahg923455 jgi|Araly1|923455|scaffold_104736.1
Length=3050
Score = 4841 bits (2621), Expect = 0.0
Identities = 2909/3047 (95%), Gaps = 23/3047 (1%)
Strand=Plus/Plus
Query 19 AACTGAGGAAAGAAACTTGCAATGTATACAAGGACAATAAGAAGGAACCAGAGATGGGGT 78
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACAGAGGAAAGAAACTTGCAATGTATACAAGGACAATAAGAAGGAACCAGAGATGGGGT 60
Query 79 TTTGTATTGCAGCAAGACAAATGCTTAGT---TAGGCCAGTGATTCGTGACCACACCGGT 135
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 61 TTTGTATTGCAGCAAGACAAATACTTAGTGAGGAGGCCAGTGATTCGTGACCACACCGTT 120
Query 136 TCCCAATCTTATAGATCCACCACA-AGTATACTAACAGATCATTTGAGAAGAAACCATCA 194
||||||||| ||||||||||||| | |||||||||| ||||||||| ||||||||||||
Sbjct 121 TCCCAATCTCCTAGATCCACCACATA-TATACTAACAAATCATTTGACAAGAAACCATCA 179
Query 195 TTCTCATGGTGCTATTGCCTCTAGAGATTATTTAAGTTATTCTTGGAATAGCCAATTGCG 254
||||| || ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 180 TTCTC------CTGTTGCCTCTAGAGACTATTTAAGTTATTCTTGGAACAGCCAATTGCG 233
Query 255 TCGGTTTAGTTCTGAAGGTGATGGAAATAATGCTAGTGAGGACAGCCGTTTCCCTCTGAA 314
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 234 TCGGTTTAGTTCTGAAGGTGATGGAAGCAATGCTAGTGAGGACAGCCGTTTCCCTCTGAA 293
Query 315 TAAAGACAAGATGGGAAAAGAGAAGAGCACG-GTC-GGTGTTGAGCATTTTGATTCTCAC 372
|||||| |||| |||||||||||| | | | ||| |||||||||||||||||||||||
Sbjct 294 TAAAGAAAAGACGGGAAAAGAGAA-A-AATGTGTCTGGTGTTGAGCATTTTGATTCTCAT 351
Query 373 GCTCAACTTGGAGTA-CAAGACCAAATAGAATGGCTCAACAATGAGAAGCGTGCAAGTGA 431
||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 352 GCTCAACTTGGAG-AGCAAGACCAAATAGAATGGCTCAACAATGAGAAGCTTGCAAGTGA 410
Query 432 AAGCAGAAAGGAGTCACCTTTTCTTAATAAACGAGAAAGATTGAAGAATGAGTTCTTGCG 491
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 411 AAGCAGAAAGGAGTCACCTTTTCTTAATAAACGAGAACGATTGAAGAATGAGTTCTTGCG 470
Query 492 GAGAATTCAACCTTGGGAAACTATACAGCTCTCTTGGGAGTCTTTCCCTTACTACGTCCA 551
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GAGGATTCAACCTTGGGAAACTATACAGCTCTCTTGGGAGTCTTTCCCTTACTACGTCCA 530
Query 552 CGAACACACAAAAGATACTCTGGTGGAATGTGTTAGCTCACATATTAAGCAAAAAAGTAT 611
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 531 CGAACACACAAAGGATACTCTGGTGGAATGTGTTAGCTCACATATTAAACAAAAAAGTAT 590
Query 612 GACTTCCAAATATGGTGCTCGTTTAGATTCTTCAAGTGGGAGAATATTGCTCCAGAGTGT 671
|| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 591 GATTTCCAAGTATGGTGCTCGTTTAGATTCTTCAAGTGGGAGAATACTGCTCCAGAGTGT 650
Query 672 TCCAGGCACTGAGCTCTACCGAGAGAGGTTGGTGCGAGCACTTGCTCGAGATACACAAGT 731
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 651 TCCAGGCACTGAGCTCTACCGGGAGAGGTTGGTACGAGCACTTGCTCGAGATACACAAGT 710
Query 732 TCCCCTGTTGGTTCTTGACAGCAGCGTTCTTGCACCTTACGATTTTGCTGATGATTACAA 791
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct 711 TCCCCTGTTGGTTCTTGACAGCAGCGTTCTTGCACCTTACGATTGTGCTGATGACTACCA 770
Query 792 TGAAGAGTCTGAATCAGATGACGACATTGCAGAATCAGACCAGTGCACGTCACAGTCAGA 851
||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||
Sbjct 771 TGAAGAGTCTGAATCAGATGATGACATTGCAGAGTCAGATCAGTGCACGTCAGAGTCAGA 830
Query 852 AGCTGAAGAAGAAACCGATGGGGACAATGATGATACTAGTAGTAGTGAAACAAAAATAGA 911
|||||| ||||||||||||| |||||||||| || ||||| ||||| |||| |||||
Sbjct 831 AGCTGAGGAAGAAACCGATGCAAACAATGATGAGACGAGTAGCGGTGAAGCAAAGATAGA 890
Query 912 AGGAACTGACGACGAAGAAAGATATTTGGAGATTTCTAAGGAAGTCCTCAAGAAACTTGG 971
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AGGAACTGACGATGAAGAACGATATTTGGAGATTTCTAAGGAAGTCCTCAAGAAACTTGG 950
Query 972 GGCCGACATAGAGGATATCGAGAAGAGAATGTCAGAACAACTATATGGCTCTAGTGAGGT 1031
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 951 GGCCGACATAGAGGATATCGAGAAGAGAATGTCGGAACAACTATATGGCTCTAGAGAGGT 1010
Query 1032 GTCAGAAGCTGCAGCTGTTGATCA-AGATGATAAAGCGAAGCGGCCTCTTAAGAAAGGAG 1090
||||||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 1011 GTCAGAAGCTGCACCTGTTGATCATTG-TGATAAAGCCAAGCGGCCTCTTAAGAAAGGAG 1069
Query 1091 ACCAAGTAAAGTATGTTGGGTCTCCTAAGAAGGACGAAGCAAAACATAGGGTCGTATTGG 1150
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1070 ACCAAGTAAGGTATGTTGGGTCTCCTAAGAAGGACGAAGCAAAGCATAGGGTCGTATTGG 1129
Query 1151 GGAAGATTTCCACATCTGATGGTCAAAAGAGTGCTTTTACCGTTATTCCTGGCAGGCCAT 1210
|||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1130 GGAAGATTTCTACATCTGATGGTCAAAAGAGTGCTTTTACCGTCATTCTTGGCAGGCCAT 1189
Query 1211 TGTCTAGTGGACAACGTGGAGAGGTATATGAGGTGATTGGGAACCGTGTTGCTGTCATAT 1270
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1190 TGTCTAGTGGACAACGTGGAGAGGTATATGAGGTGAGTGGGAACCGTGTTGCTGTCATAT 1249
Query 1271 TCGAATACGGTGATGATAAAACATCAGAGGGAAGTGAGAAAAAGCCAGCAGAGCAGCCCC 1330
| || || ||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1250 TTGACTATGGTAATGATAAAACAACAGAGGGAAGTGAGAAAAAGCCAGCAGAGCAGCCCC 1309
Query 1331 AGATGTTACCCATCCACTGGTTAGATGTGAAAGACCTGAAGTACGATTTGGATATGCAGG 1390
|||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1310 AGATGTTACCTATCCACTGGGTAGATGTGAAAGACGTGAAGTACGATTTGGATATGCAGG 1369
Query 1391 CAGTTGATGGCTACATTGCTATGGAAGCTTTAAATGAGGTTTTGCAATCCATTCAACCAC 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 CAGTTGATGGCTACATTGCTATGGAAGCTTTAAATGAGGTTTTGCAATCCATTCAACCAC 1429
Query 1451 TTATAGTCTATTTTCCAGACTCGACGCAGTGGTTGTCTAGAGCTGTGCCTAAGACAAGAC 1510
||||||||||||||||||||||| | |||||||||||||||||||| | |||||| ||||
Sbjct 1430 TTATAGTCTATTTTCCAGACTCGTCACAGTGGTTGTCTAGAGCTGTTCTTAAGACGAGAC 1489
Query 1511 GAAAGGAATTTGTAGACAAAGTTAAGGAAATGTTTGATAAACTATCAGGTCCGATTGTTA 1570
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1490 GAAAGGAATTTGTAGACAAAGTTCAGGAAATGTTTAATAAACTATCAGGTCCGATTGTTA 1549
Query 1571 TGATCTGTGGGCAGAACAAGATAGAAACAGGCTCAAAAGAAAGAGAGAAATTCACGATGG 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 TGATCTGTGGGCAGAACAAGATAGAAACAGGCTCAAAAGAAAGAGAGAAATTCACGATGG 1609
Query 1631 TACTCCCAAACCTTAGCCGAGTTGTGAAGCTGCCTCTTCCCTTGAAGGGCCTAACTGAGG 1690
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TACTCCCAAACTTTAGCCGACTTGTGAAGCTGCCTCTTCCCTTGAAGGGCCTAACTGAGG 1669
Query 1691 GATTCACGGGAAGGG-GAAAATCAGAGGAGAATGAGATATACAAGCTTTTCACTAATGTT 1749
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 GATTCACGGG-AGGGAAAAAATCAGAGGAGAATGAGATATACAAGCTTTTCACTAATGTT 1728
Query 1750 ATGCGCCTACATCCTCCGAAGGAGGAGGATACCCTCAGATTATTCAAGAAACAACTAGGA 1809
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1729 ATGCGCCTACATCCTCCGAAGGAGGAAGATACCCTCAGATTATTCAAGAAACAACTAGGA 1788
Query 1810 GAAGATAGGAGAATTGTGATATCGCGGAGCAATATAAATGAGTTGCTAAAGGCACTTGAA 1869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 GAAGATAGGAGAATTGTGATATCGCGGAGCAATATAAATGAGTTGCTAAAGGCACTTGAA 1848
Query 1870 GAACATGAGTTATTGTGCACAGATTTATATCAAGTGAACACCGATGGGGTTATATTGACA 1929
|||||||| ||||| |||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 1849 GAACATGAATTATTATGCACAGACTTGTATCAAGTGAACACCGATGGGGTGATATTGACA 1908
Query 1930 AAGCAAAAAGCAGAGAAAGCTATTGGCTGGGCCAAAAATCACTATTTAGCTTCTTGTCCA 1989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 AAGCAAAAAGCAGAGAAAGCTATTGGCTGGGCCAAAAATCACTATTTAGCTTCTTGTCCA 1968
Query 1990 GTCCCATTGGTTAAAGGAGGTCGCTTGTCTCTGCCTCGTGAAAGCCTTGAGATATCAATT 2049
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 GACCCATTGGTTAAAGGAGGTCGCTTGTCTCTGCCTCGTGAAAGCCTTGAGATATCAATT 2028
Query 2050 GCGAGGTTAAGAAAATTAGAAGATAACTCCCTAAAGCCTTCGCAAAACTTGAAGAATATT 2109
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 2029 GCGAGGTTAAGAAAATTAGAAGATAATTCTCTAAAGCCCTCGCAAAACTTGAAGAATATT 2088
Query 2110 GCAAAGGATGAGTACGAAAGAAATTTTGTCTCGGCTGTGGTTGCTCCTGGAGAAATTGGC 2169
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 2089 GCAAAGGATGAGTATGAAAGAAATTTTGTCTCGGCTGTGGTTGCGCCTGGTGAAATAGGC 2148
Query 2170 GTCAAATTTGAAGATATTGGGGCTCTCGAAGACGTGAAAAAAGCATTAAATGAGCTGGTT 2229
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2149 GTCAAATTTGAAGATATTGGGGCTCTCGAAGACGTTAAAAAGGCATTAAATGAGCTGGTT 2208
Query 2230 ATTCTTCCCATGAGAAGGCCAGAGCTTTT-TGCCCGTGGAAATCTCTTGCGGCCCTGTAA 2288
||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 2209 ATTCTTCCCATGAGAAGGCCAGAGCTTTTCT-CGCGTGGAAATCTCTTGCGGCCCTGTAA 2267
Query 2289 AGGAATATTGCTTTTTGGTCCTCCTGGAACGGGTAAGACGCTCCTAGCTAAGGCGCTTGC 2348
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2268 AGGAATATTGCTTTTTGGTCCTCCTGGAACGGGTAAGACGCTCCTTGCTAAGGCACTTGC 2327
Query 2349 AACAGAAGCTGGGGCAAACTTCATTAGCATAACTGGCTCAACACTTACATCAAAGTGGTT 2408
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2328 AACTGAAGCTGGAGCAAACTTCATTAGCATAACTGGCTCAACACTTACATCAAAGTGGTT 2387
Query 2409 CGGAGATGCAGAGAAGCTCACTAAGGCTCTCTTTTCCTTTGCCACCAAGCTAGCACCTGT 2468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2388 CGGAGATGCAGAGAAGCTCACTAAGGCTCTCTTTTCCTTTGCCACCAAGCTAGCACCTGT 2447
Query 2469 AATTATTTTTGTTGATGAGATCGACAGTCTGCTAGGTGCTCGTGGTGGCTCTTCCGAGCA 2528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2448 AATTATTTTTGTTGATGAGATCGACAGTCTGCTAGGTGCTCGTGGTGGCTCTTCCGAGCA 2507
Query 2529 CGAAGCTACCAGAAGAATGAGAAATGAGTTCATGGCAGCTTGGGACGGGCTCAGGTCAAA 2588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2508 CGAAGCTACCAGAAGAATGAGAAATGAGTTCATGGCAGCTTGGGACGGGCTCAGGTCAAA 2567
Query 2589 AGACAGCCAAAGGATCCTCATTCTTGGTGCCACCAACCGTCCCTTTGATCTTGATGATGC 2648
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2568 AGACAGTCAAAGGATCCTCATTCTTGGTGCCACCAACCGTCCCTTTGATCTTGATGATGC 2627
Query 2649 TGTCATTCGTCGTCTACCAAGGCGGATATATGTCGACTTACCAGATGCCGAAAACCGGTT 2708
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2628 GGTCATTCGTCGTCTACCAAGACGGATATATGTCGACTTACCAGATGCCGAAAACCGGTT 2687
Query 2709 AAAGATACTGAAAATATTTCTAACTCCTGAAAATCTGGAATCTGATTTCCAGTTCGAGAA 2768
||||||||||||||||||||||||||| |||||||||||||| | ||||||||| || ||
Sbjct 2688 AAAGATACTGAAAATATTTCTAACTCCAGAAAATCTGGAATCCGGTTTCCAGTTTGACAA 2747
Query 2769 ACTTGCAAAGGAAACTGAAGGTTATTCCGGTAGCGATCTGAAGAATCTATGCATTGCTGC 2828
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2748 ACTTGCAAAGGAAACTGAAGGCTATTCCGGTAGCGATCTGAAGAATCTATGCATTGCTGC 2807
Query 2829 TGCGTACAGGCCTGTTCAAGAACTGTTACAAGAAGAACAAAAGGGTGCAAGAGCAGAAGC 2888
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2808 TGCGTACAGGCCTGTTCAAGAACTGTTACAAGAAGAACAAAAGGGTGCAAGAGCGGAAGC 2867
Query 2889 ATCTCCTGGTCTACGGTCGCTAAGTTTGGATGACTTCATTCAGTCTAAAGCTAAGGTGAG 2948
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2868 GTCTCCTGGTCTACGGTCGCTGAGTTTGGATGACTTCATTCAGTCTAAAGCTAAGGTGAG 2927
Query 2949 CCCATCTGTGGCGTACGATGCGACTACGATGAATGAGCTGAGAAAATGGAACGAGCAATA 3008
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 2928 CCCATCTGTGGCGTACGATGCGACAACGATGAACGAGCTGAGAAAATGGAATGAGCAATA 2987
Query 3009 TGGTGAAGGAGGCAGCAGGACAAAGTCTCCTTTTGGCTTCTGATGAA 3055
||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 2988 CGGTGAAGGAGGGAGCAGGACAAAGTCTCCTTTTGGCTTCTGAAGAA 3034
> Ahg479491 jgi|Araly1|479491|fgenesh2_kg.3__2192__AT3G19740.1
Length=3293
Score = 1738 bits (941), Expect = 0.0
Identities = 1587/1893 (84%), Gaps = 68/1893 (4%)
Strand=Plus/Plus
Query 1203 CAGGCCATTGTCTAGTGGACAACGTGGAGAGGTATATGAGGTGATTGGGAACCGTGTTGC 1262
||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1351 CAGGCCATTATCTAGCGGACAACGTGGAGAGGTCTATGAGGTGAATGGGAACCGTGTTGC 1410
Query 1263 TGTCATATTCGAATACGGT-GATGATAAAACATCAGAGGGAAGTGAGAA-AAAGCCAGCA 1320
|||||||| | | | || | ||| | | |||||||||||| ||||| ||| || ||
Sbjct 1411 GGTCATATTTG-ACAATGTAGGTGAGACATCATCAGAGGGAAACGAGAAGAAA-TCAACA 1468
Query 1321 GAGCAGC-CCCAGATGTTACCCATCCACTGGTTAGATG-TGA---A-AGA-------C-C 1366
||||| | |||| | | ||| || |||||| |||||| | | | | | | |
Sbjct 1469 GAGCA-CTCCCATAAGCTACATATGCACTGGATAGATGCTAACTTACATATTTTCTGCGC 1527
Query 1367 --T--G-AA-GT--A-C--GATTTGGATATGCAGGCAGTTGATGGCTACATTGCTATGGA 1415
| | || | | | ||||||||||||||||||| |||||||| || || |||||
Sbjct 1528 AGTCGGAAACCTAAAGCATGATTTGGATATGCAGGCAGAAGATGGCTATATCGCCATGGA 1587
Query 1416 AGCTTTAAATGAGGTTTTGCAATCCAT-TCAACCACTTATAGTCTATTTTCCAGACTCGA 1474
||||||| |||||||||||||||| | ||||||||||| ||||||||||| ||||||
Sbjct 1588 GGCTTTAAGTGAGGTTTTGCAATCC-TCGCAACCACTTATTGTCTATTTTCCCGACTCGT 1646
Query 1475 CGCAGTGGTTGTCTAGAGCTGTGCCTAAGACAAGACGAAAGGAATTTGTAGACAAAGTTA 1534
|||||||||||||||||||||| |||||| ||| || ||| || |||||| ||||||||
Sbjct 1647 CGCAGTGGTTGTCTAGAGCTGTACCTAAGTCAAAACAAAATGAGTTTGTAAACAAAGTTC 1706
Query 1535 AGGAAATGTTTGATAAACTATCAGGTCC-GATTGTTATGATCTGTGGGCAG-AACAAGA- 1591
||||||||||||||||| | |||||||| | |||| ||||||||||| | | |||||||
Sbjct 1707 AGGAAATGTTTGATAAATTGTCAGGTCCTG-TTGTAATGATCTGTGGAC-GAAACAAGAC 1764
Query 1592 TAGAAACAGGCTCAAAAGAAAGAGAGAAATTCACGATGGTACTCCCAAACCTT-AGCCGA 1650
| ||||||||||||||||| ||||||||||| |||||| |||||||||| ||| ||||
Sbjct 1765 T-GAAACAGGCTCAAAAGAGAGAGAGAAATTTACGATGATACTCCCAAA-CTTCGGCCGT 1822
Query 1651 GTTGTGAAGCTGCCTCTTCCCTTGAAGGGCCTAACTGAGGGATTCACGGGAAGGGGAAA- 1709
||| ||| ||||| ||||| |||||| || ||||| ||| ||||||||| || |||
Sbjct 1823 CTTGGGAAACTGCCCCTTCCGTTGAAGCATCTCACTGAAGGACTCACGGGAA-GGAAAAC 1881
Query 1710 ATCAGAGGAGAATGAGATATACAAGCTTTTCACTAATGTTATGCGCCTACAT-CCTCCGA 1768
||||||||| ||||||||||||||||| ||||||||||||||| ||||| | ||||| |
Sbjct 1882 ATCAGAGGATAATGAGATATACAAGCTCTTCACTAATGTTATGAACCTAC-TCCCTCCTA 1940
Query 1769 AGGAGGAGGATACCCTCAG-ATTATTCAAGAAACAACTAGGAGAAGATAGGAGAATTGTG 1827
|||| || |||| |||| | | ||||||| |||||||| |||||||| || |||||||||
Sbjct 1941 AGGAAGAAGATAACCTC-GTAGTATTCAACAAACAACTTGGAGAAGACAGAAGAATTGTG 1999
Query 1828 ATATCGCGGAGCAATATAAATGAGTTGCTAAAGGCACTTGAAGAACATGAGTTATTGTGC 1887
|| || ||||||||| |||||||| | || ||||| ||||| ||| | ||||| ||||||
Sbjct 2000 ATGTCACGGAGCAATTTAAATGAGCTACTTAAGGCGCTTGAGGAAAACGAGTTTTTGTGC 2059
Query 1888 ACAGATTTATATCAAGTGAACACCGATGGGGTTATATTGACAAAGCAAAAAGCAGAGAAA 1947
|| || || || ||||||||||||||||| || |||||||||||||||| ||| ||||||
Sbjct 2060 ACTGACTTGTACCAAGTGAACACCGATGGCGTGATATTGACAAAGCAAAGAGCGGAGAAA 2119
Query 1948 GCTATTGGCTGGGCCAAAAATCACTATTTAGCTTCTTGTCC-AGTCCCATTGGTTAAAGG 2006
| |||||||||||||| ||| ||||||||| |||||||||| || ||||| | ||||||
Sbjct 2120 GTTATTGGCTGGGCCAGAAACCACTATTTATCTTCTTGTCCTAG-CCCATCGATTAAAGA 2178
Query 2007 AGGTCGCTTG-TCTCTGCCTCGTGAAAGCCTTGAGATATCAATTGCGAGG-TTAA-GAAA 2063
||| ||| || | |||||| ||||||||| ||||||| ||| || ||| | || | |
Sbjct 2179 AGGCCGCCTGAT-TCTGCCCCGTGAAAGCATTGAGATTTCAGTTAAAAGGCTAAAGGCAC 2237
Query 2064 ATTAGAAGATAACTCCCTAAAGCCTTCGCAAAACTTGAAGAATATTGCAAAGGATGAGTA 2123
| |||||||| || | ||||| | || ||||||||||||||||| |||||||||||
Sbjct 2238 A--AGAAGATATTTCTCGGAAGCCCACACATAACTTGAAGAATATTGCTAAGGATGAGTA 2295
Query 2124 CGAAAGAAATTTTGTCTCGGCTGTGGTTGCTCCTGGAGAAATTGGCGTCAAA-TTTGAAG 2182
||||| ||||||||||| || ||||||||||||||||||||||| || ||| ||||| |
Sbjct 2296 CGAAACCAATTTTGTCTCAGCCGTGGTTGCTCCTGGAGAAATTGGGGT-AAAGTTTGACG 2354
Query 2183 ATATTGGGGCTCTCGAAGACGTGAAAAAAGCATTAAATGAGCTGGTTATTCTTCCCATGA 2242
| ||||| ||||| ||| | |||||||| ||| |||||||| ||||||||||||||||||
Sbjct 2355 ACATTGGTGCTCTTGAACATGTGAAAAAGGCACTAAATGAGTTGGTTATTCTTCCCATGA 2414
Query 2243 GAAGGCCAGAGCTTTTTGCCCGTGGAAATCTCTTGCGGCCCTGTAAAGGAATATTGCTTT 2302
|||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||
Sbjct 2415 GAAGGCCAGAGCTTTTCACCCGTGGAAATCTCTTGCGGCCATGTAAAGGCATATTGCTTT 2474
Query 2303 TTGGTCCTCCTGGAACGGGTAAGACGCTCCTAGCTAAGGCGCTTGCAACAGAAGCTGGGG 2362
||||||||||||| |||||||| || || || || |||||||||||||||||||||||||
Sbjct 2475 TTGGTCCTCCTGGTACGGGTAAAACACTACTTGCCAAGGCGCTTGCAACAGAAGCTGGGG 2534
Query 2363 CAAACTTCATTAGCATAACTGGCTCAACACTTACATCAAAGTGGTTCGGAGATGCAGAGA 2422
| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 2535 CGAACTTCATTAGCATAACTGGCTCAACGCTTACCTCAAAGTGGTTTGGAGATGCAGAGA 2594
Query 2423 AGCTCACTAAGGCTCTCTTTTCCTTTGCCACCAAGCTAGCACCTGTAATTATTTTTGTTG 2482
||||||| |||||| | || |||||||| | ||| ||||| ||||| ||||| |||||||
Sbjct 2595 AGCTCACAAAGGCTTTGTTCTCCTTTGCAAGCAAACTAGCCCCTGTCATTATATTTGTTG 2654
Query 2483 ATGAGATCGACAGTCTGCTAGGTGCTCGTGGTGGCT-CTTCCGAGCACGAAGCTACCAGA 2541
||||| | |||||| || | |||||||||||||| | ||| ||||| || || ||| ||
Sbjct 2655 ATGAGGTTGACAGTTTGTTGGGTGCTCGTGGTGG-TGCTTTTGAGCATGAGGCAACCCGA 2713
Query 2542 AGAATGAGAAATGAGTTCATGGCAGCTTGGGACGGGCTCAGGTCAAAAGACAGCCAAAGG 2601
||||||||||||||||| |||||||||||||| || ||||| |||||||| |||||||||
Sbjct 2714 AGAATGAGAAATGAGTTTATGGCAGCTTGGGATGGACTCAGATCAAAAGATAGCCAAAGG 2773
Query 2602 ATCCTCATTCTTGGTGCCACCAACCGTCCCTTTGATCTTGATGATGCTGTCATTCGTCGT 2661
|| |||||||| |||||||||||||| || |||||||||||||| |||||||||||| |
Sbjct 2774 ATTCTCATTCTCGGTGCCACCAACCGACCTTTTGATCTTGATGACGCTGTCATTCGTAGG 2833
Query 2662 CTACCAAGGCGGATATATGTCGACTTACCAGATGCCGAAAACCGGTTAAAGATACTGAAA 2721
|||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| ||||
Sbjct 2834 CTACCAAGACGGATATATGTCGATTTACCAGATGCGGAAAACCGGTTGAAGATTTTGAAG 2893
Query 2722 ATATTTCTAACTCCTGAAAATCTGGAATCTGATTTCCAGTTCGAGAAACTTGCAAAGGAA 2781
||||| || || || |||||||| ||| ||| |||| |||| || |||||||||||||||
Sbjct 2894 ATATTCCTGACACCAGAAAATCTTGAAACTGGTTTCGAGTTTGAAAAACTTGCAAAGGAA 2953
Query 2782 ACTGAAGGTTATTCCGGTAGCGATCTGAAGAATCTATGCATTGCTGCTGCGTACAGGCCT 2841
|| ||||| ||||| || ||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 2954 ACCGAAGGATATTCAGGAAGCGATCTGAAGAATCTATGCATAGCTGCTGCATACAGACCT 3013
Query 2842 GTTCAAGAACTGTTACAAGAAGAACAA-AAGGG-TGCAAG-AGCAGAA-GCATCTCCTGG 2897
|| |||||| |||||||||||||| || |||| | | | |||| || ||||| ||||
Sbjct 3014 GTGCAAGAATTGTTACAAGAAGAA-AACAAGGACT-CG-GTAGCA-AATGCATCCCCTGA 3069
Query 2898 TCTACGGTCGCTAAGTTTGGATGACTTCATTCAGTCTAAAGCTAAGGTGAGCCCATCTGT 2957
|||||| | || |||||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct 3070 TCTACGACCACTGAGTTTGGACGACTTCATTCAATCTAAAGCTAAGGTAAGTCCATCTGT 3129
Query 2958 GGCGTACGATGCGACTACGATGAATGAGCTGAGAAAATGGAACGAGCAATATGGTGAAGG 3017
||| ||||| || || || ||||| || |||||||||||||||||||||| ||||||||
Sbjct 3130 GGCATACGACGCAACCACAATGAACGAATTGAGAAAATGGAACGAGCAATACGGTGAAGG 3189
Query 3018 AGGCAGCA-GGACAAAGTCTCCTTTTGGCTTCT 3049
||| | || |||| |||||||||||||||||||
Sbjct 3190 AGGGA-CACGGACCAAGTCTCCTTTTGGCTTCT 3221
Score = 643 bits (348), Expect = 0.0
Identities = 915/1173 (78%), Gaps = 102/1173 (9%)
Strand=Plus/Plus
Query 40 ATGTATACAAGGACAAT-AAGAAGGAACCAGAGATGGGGTTTTGTATTGCAGCAAGACAA 98
|||||||||||| || | ||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 212 ATGTATACAAGGGCATTAAAG-AGGAACCAGAGATGGGGTTTGGTATTGCAGCAAGCCAA 270
Query 99 ATGCTTAGTTAGGCCAG-TGATTCGTGACCACACCGGTTCCCA-ATCTTATAGATCCAC- 155
|| |||||||||||||| | |||||||| | | ||||| ||| ||||| | ||| |||
Sbjct 271 ATACTTAGTTAGGCCAGCCG-TTCGTGACTATA-CGGTTTCCAGATCTTGTGGATTCACA 328
Query 156 CA-CAAGTATACTAACAGAT-C--ATTTGAGAAGAA--AC-C-A------TCA--TTCT- 198
| || || ||||| || | | |||||| ||||| | | | ||| ||||
Sbjct 329 AATCATTTA-ACTAATAG-TGCAAATTTGACAAGAACGTCTCTACTTGGTTCATTTTCTC 386
Query 199 CAT--GGT-G--CTATTGCCTCTAGAG-ATTATTTAAGTTATTCTTG--GAATAGCCAAT 250
| | ||| | |||||||||| | | ||| |||||| | || ||| ||||||||| |
Sbjct 387 CCTGCGGTGGTACTATTGCCTC-GGGGAATTGTTTAAG-TGTT-TTGAAGAATAGCCAGT 443
Query 251 TGCGTCGGTTTAGTTCTGAAGGTGATGGAAATAATGCTAGTGAGGACAGCCGTTTCCCTC 310
||||| | |||||||||||||||||||||| |||||||||||||| | | | || ||
Sbjct 444 TGCGTTGTTTTAGTTCTGAAGGTGATGGAAGGAATGCTAGTGAGGATAAACATATCTCTT 503
Query 311 TGAATAAA--G-A-----CA-A-GATGGGAAAA--GAGAA-GAG-CACG--GT--CGGTG 352
|||| ||| | | | | ||||| |||| | ||| ||| | | | |||||
Sbjct 504 TGAACAAAGGGAATGGTGTAGATGATGGAAAAACCGGGAAGGAGAAAAGTAATAGCGGTG 563
Query 353 TTGAGCATTTTGATTCTCACGCTCAACTTGGAGTACAAGACCAAATAGAATGGCTCAACA 412
||| |||||| |||||||| ||||||||||||| ||| |||||||||||||||||||| |
Sbjct 564 TTGGGCATTTGGATTCTCATGCTCAACTTGGAGAACAGGACCAAATAGAATGGCTCAATA 623
Query 413 ATGAGAAGCGTGCAAGTGAAAGC--AGA-AAGGAGTCACCTTTTCTTAATAAACGAGAAA 469
||||||||| ||| |||||| || | | |||||||||||||| ||||||| ||||||||
Sbjct 624 ATGAGAAGCTTGCTAGTGAATGCAAAAAGAAGGAGTCACCTTTCCTTAATAGACGAGAAA 683
Query 470 GATTGAAGAATGAGTTCTTGCGGAGAATTCAACCTTGGGAAACTATACAGCTCTCTTGGG 529
|||| || || |||||||| |||||||| ||||||||||||| |||||||| || ||||
Sbjct 684 GATTCAAAAACGAGTTCTTACGGAGAATCCAACCTTGGGAAAAAATACAGCTTTCGTGGG 743
Query 530 AGTCTTTCCCTTACTACGTCCACGAACACAC-AAAAGATACTCTGGTGGAATGTGTTAGC 588
|| | ||||||||||| ||||||| ||||| |||| ||| | ||||||||||||||| |
Sbjct 744 AGACCTTCCCTTACTATATCCACGACCACACGAAAA-ATATTTTGGTGGAATGTGTTACC 802
Query 589 TCACATATTAAGCAAAAAAGTATG--ACTTCCAAATATGGTGCTCGTTTAGATTCTTCAA 646
||||||| |||| | ||||| ||| |||||| ||||||||| ||||||||||||||||
Sbjct 803 TCACATA-TAAG-ACAAAAGAATGCCGCTTCCATATATGGTGCCCGTTTAGATTCTTCAA 860
Query 647 GTGGGAGAATATTGCTCCAGAGTGTTCCAGGCACTGAGCTCTACCGAGAGAGGTTGGTGC 706
|||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |
Sbjct 861 GTGGAAGAATATTGCTCCAGAGTGTTCCAGGTACTGAGCTTTACCGGGAGAGGTTGGTAC 920
Query 707 GAGCACTTGCTCGAGATACACAAGTTCCCCTGTTGGTTCTTGACAGCAGCGTTCTTGCAC 766
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 921 GAGCACTTGCTCGAGATGTACAAGTTCCCCTGTTGGTTCTTGACAGCAGCGTTCTTGCCC 980
Query 767 CTTACGATTTTGCTGATGATTACAATGAAGAGTCTGAATCAGATGACGACATTGCAGAAT 826
| || |||||||||||||| ||||||||||| |||||||| |||| || | |||||||
Sbjct 981 CATATGATTTTGCTGATGACTACAATGAAGATTCTGAATCTGATGGTGAGAATGCAGAAG 1040
Query 827 CAGAC-CAG-TG---C-ACGTCACAGTCAGAAGCTGAAGAAGAAACCGATGGGGACAATG 880
| || ||| || | ||| || |||| |||||||| |||||| | ||| | | |
Sbjct 1041 CGGAAGCAGATGAGTCCACGACAGAGTCTGAAGCTGAGGAAGAATC---TGGTG-C--TC 1094
Query 881 ATGATACTAGTAGTAGT--GAAACAAAAATAGAAGGAACTGACGACGAAGAAAGATAT-T 937
|| | | || || | | ||| | |||| ||| || | |||| | || ||| | | | |
Sbjct 1095 AT-AG-CGAGGAGGATTCTGAAGCGAAAACAGATGGGAGTGACAATGAGGAA-GCT-TGT 1150
Query 938 -TGGAGATTTCTAAGGAAG-TCCTCAAGAAACTTGGGGCCGACA-TAGAGGA-TATCGAG 993
| ||| ||||| |||||| | |||||||| ||| | || | | | ||||| | ||||
Sbjct 1151 CTCGAGGTTTCTGAGGAAGCTA-TCAAGAAAATTGTG-CCAAAACTTGAGGAGT-TCGAA 1207
Query 994 AAG--AGAATGTCAGAACAACTATATGGCTCTAGTGAGG-T-GTCAGAAGCTGCAGCTGT 1049
||| || | | ||||| ||||| |||| ||| |||| | | | | || || ||||||||
Sbjct 1208 AAGCTAGTA-G-CAGAAGAACTACATGGTTCTGGTGAAGCTTG-C-GAGGCGGCAGCTGT 1263
Query 1050 TGATCAAGATGATAAAGCGAAGCGGCCT-CTTAAGAAAGGAGACCAAGTAAAGTATGTTG 1108
||| | ||| ||||| | ||| || | ||||||||||| | ||||| |||||||
Sbjct 1264 TGAGCCTTCTGAAAAAGCCAGGCGACCGGCA-AAGAAAGGAGATCGTGTAAAATATGTTG 1322
Query 1109 GGTCTCCTAAGAAGGAC-GAAGCAAAACATAGG 1140
|| || ||||||||| | || ||||| || |||
Sbjct 1323 GGCCTTCTAAGAAGG-CTGATGCAAAGCACAGG 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122164809330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5