BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50180.1 Length=2574 Score E Sequences producing significant alignments: (Bits) Value Ahg474150 jgi|Araly1|474150|fgenesh2_kg.1__4104__AT1G50180.1 3517 0.0 > Ahg474150 jgi|Araly1|474150|fgenesh2_kg.1__4104__AT1G50180.1 Length=2580 Score = 3517 bits (1904), Expect = 0.0 Identities = 2070/2151 (96%), Gaps = 8/2151 (0%) Strand=Plus/Plus Query 1 ATGGCAGAGGCTATTGTTTCTGTTACAGTGCAGAAGCTAGGACAGTTGCTCTTGGAAGAA 60 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1 ATGGCAGAGGCTATTGTTTCTGTTACAGTGCAGAAGCTGGGAGAGTTGCTCTTGGAAGAA 60 Query 61 CCGTTGTTCTTATTTGGTATAGGTGACCAAGTGAAGCAGCTGCAAGACGAATTGAAGCGT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCGTTGTTCTTATTTGGTATAGGTGACCAAGTGAAGCAGCTGCAAGACGAATTGAAGCGT 120 Query 121 TTGAATTGCTTTTTGAAAGATGCAGATGAGAAGCAGCATGAAAGCGAGAGAGTGCGTAAC 180 ||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 121 TTGAAGTGCTTTTTGAAAGATGCAGATGAGAAGCAGTATAAAAGCGAGAGAGTGCGTAAC 180 Query 181 TGGGTTGCAGGCATTAGAGAAGCTTCTTATGATGCAGAGGATATCCTCGAGGCATTTTTC 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 181 TGGGTTGCAGGCATTAGAGAAGCTTCTTATGATGCAGAGGATATCCTCGAGGCATGTTTC 240 Query 241 CTCAAAGCAGAATCAAGGAAACAAAAAGGGATGAAAAGGGTGCTTAGGAGGCTTGCTTGC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 241 CTCAAAGCAGAATCAAGGAAACAAAAAGGGATGAAAAGGGTGCTTAGGAGGCTTGCTTAC 300 Query 301 ATCTTGAACGAAGCGGTTTCACTTCATAGTGTTGGCTCAGAGATTAGAGAGATCACCTCC 360 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATCTTGAACGAGGCGGTTTCACTTCATAGTGTTGGCTCAGAGATTAGAGAGATCACCTCC 360 Query 361 AGGCTTTCTAAGATAGCAGCAAGCATGCTAGATTTTGGTATAAAAGAATCTATGGGCAGA 420 | |||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| Sbjct 361 AAGCTTTCTAAGATAGCAGCAAGCATGCTAGATTACGGTATAATAGAAGCTATGGGCAGA 420 Query 421 GAAGGTTTGAGTTTGTCTGATAGTCTAAGAGAACAGAGGCAATCGTTTCCATAT-GTTGT 479 ||||| ||||||||||||||||||| ||||||||||||||| |||||||||| | ||||| Sbjct 421 GAAGGCTTGAGTTTGTCTGATAGTCAAAGAGAACAGAGGCAGTCGTTTCCAT-TCGTTGT 479 Query 480 TGAGCATAATCTTGTTGGGTTAGAGCAGAGTCTAGAGAAGTTGGTGAATGATTTAGTTTC 539 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 480 TGAGCATAATCTTGTCGGGTTGGAGCAGAGTCTTGAGAAGTTGGTGAATGATTTAGTTTC 539 Query 540 CGGAGGTGAGAAACTAAGAGTCAC-GTCCATCTGCGGAATGGGTGGTTTGGGGAAAACAA 598 ||||||||||||||||| ||||| | ||||||| || |||||||||||||||||||||| Sbjct 540 TGGAGGTGAGAAACTAAGGGTCACAG-CCATCTGTGGGATGGGTGGTTTGGGGAAAACAA 598 Query 599 CTTTAGCCAAACAGATTTTCCATCAC-CATAAAGTGAGGCGTCATTTCGATAGATTTGCT 657 |||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| Sbjct 599 CTTTAGCCAAACAGATTTTCCATCACGGA-AAAGTGAGGCGTCATTTCGATAGGTTTGCT 657 Query 658 TGGGTATATGTTTCTCAAGACTGTAGACGGAGACATGTTTGGCAAGACATTTTTCTGAAT 717 ||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||| Sbjct 658 TGGGTATATGTTTCTCAAGACTGTAGACGGACACATATTTGGCAAGAGATTTTTCTAAAT 717 Query 718 CTCAGCTACAAGGATGAAAATCAGAGAATACTCAGCTTGAGGGATGAACAACTTGGAGAG 777 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 718 CTCAGCTACAAGGATGAGAATCAGAGAATACTCAGCTTGAGGGATGAACAGCTTGGAGAG 777 Query 778 GAGTTGCATCGGTTCTTGAAAAGGAATAAATGCCTCATTGTGCTTGATGATATCTGGGGC 837 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 GAGTTGCATAAGTTCTTGAAAAGGAATAAATGCCTCATTGTGCTTGATGATATCTGGGGC 837 Query 838 AAAGATGCTTGGGATTGTCTGAAACACGTCTTTCCACATGAAACAGGAAGCGAAATAATC 897 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 838 AAAGATGCTTGGGATTGTCTGAAACACGTTTTTCCACATGAAACAGGAAGCGAAATAATC 897 Query 898 CTCACTACTCGGAACAAGGAAGTCGCTTTATATGCTGATCCCAGGGGTGTGCTTCATGAG 957 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 CTCACCACTCGGAACAAGGAAGTCGCTTTATATGCTGATCCCAGGGGTGTGCTTCATGAG 957 Query 958 CCACAATTGCTAACATGTGAAGAGAGTTGGGAGCTGTTGGAGAAAATTTCATTATCTGGA 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 CCACAATTGCTAACATGTGAAGAGAGTTGGGAGCTGTTGGAGAAAATTTCATTATCTGGA 1017 Query 1018 AGAGAAAATATAGAGCCAATGTTGGTCAAGAAAATGGAGGAGATTGGGAAGCAGATAGTT 1077 |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1018 AGAGAAGATATAGAGCCAATGTTGGTCAAGAAACTGGAGGAGATTGGGAAGCAGATAGTC 1077 Query 1078 GTAAGGTGTGGAGGTTTACCTCTAGCTATAACAGTTCTTGGAGGACTTCTGGCAACGAAA 1137 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1078 GTAAGGTGTGGAGGTTTACCTCTAGCTATAACAGTTCTTGGAGGACTTCTGGCAATGAAA 1137 Query 1138 AGTACATGGAACGAGTGGCAAAGAGTATGCGAGAACATCAAATCATATGTTTCAAATGGA 1197 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1138 AGTACATGGAACGAGTGGCAAAGAGTATACGAGAACATCAAATCATATGTTTCAAACGGA 1197 Query 1198 GGTAGTAGCAATGGAAGTAAGAACATGCTAGTTGCAGATGTTTTGTGCTTGAGTTACGAG 1257 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1198 GGTAGTAGCAATGGAAGTAAGAACATGCTAGTTGCAGATGTTTTATGCTTGAGTTACGAG 1257 Query 1258 TACTTGCCTCCCCATGTAAAGCAATGTTTCCTCTACTTTGCTCATTATCCTGAAGACTAT 1317 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 TACTTGCCTCCCCATCTAAAGCAATGTTTCCTCTACTTTGCTCATTATCCTGAAGACTAT 1317 Query 1318 GAGGTTCATGTGGGAACACTAGTTAGTTATTGCATCGCAGAGGGAATGGTTATGCCTGTA 1377 |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| Sbjct 1318 GAGGTTCATGTGGGAACATTAGTTAGTTACTGGATCGCAGAGGGAATGGTTATGCCTGTA 1377 Query 1378 AAACACACAGAGGCTGGCACGACAGTGGAAGATGTCGGGCAAGATTATCTTGAGGAATTA 1437 |||||||||||||||||||||||||| |||||| | |||||||||||||| || |||||| Sbjct 1378 AAACACACAGAGGCTGGCACGACAGTAGAAGATATTGGGCAAGATTATCTCGAAGAATTA 1437 Query 1438 GTAAAGAGAAGCATGGTTATGGTTGGGAGGAGGGACATTGTAACTTCGGAAGTCATGACA 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 GTAAAGAGAAGCATGGTTATGGTTGGGAGGAGGGACATTGTAACTTCGGAAGTCATGACA 1497 Query 1498 TGCCGTATGCATGACCTCATGAGGGAGGTGTGTTTACAGAAGGCAAAGCAAGAAAGCTTT 1557 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1498 TGCCGTATGCATGACCTCATGAGGGAGGTGTGTTTACAGAAGGCAGAGCAAGAAAGCTTT 1557 Query 1558 GTGCAAGTTATTGATTCAAGGGATCAAGATGAAGCTGAGGCTTTTATATCTCTTTCGACC 1617 || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1558 GTCCAAGTTATTGATTCAAGGGATCAAGATGAAGCTGAGGCTTTTTTATCTCTTTCGACC 1617 Query 1618 AATACATCTCGTAGAATTTCTGTCCAACTACATGGTGGAGCAGAGGAGCACCATATCAAG 1677 ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| Sbjct 1618 AATACATCTCGTAGAATTTCTGTTCAATTACATGGTGGAGCAGAGGAGCACCAGATCAAG 1677 Query 1678 AGTCTGTCGCAGGTTTCCTTCAGAAAGATGAAACTTCTTCGAGTTCTAGATCTTGAGGGA 1737 || || || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1678 AGACTTTCTCAGGTTTCCTTCAGAAAGATGAAACTTCTTCGAGTTCTAGATCTCGAGGGA 1737 Query 1738 GCTCAAATCGAGGGAGGGAAGTTGCCAGACGATGTAGGAGATCTCATCCATTTGAGGA-A 1796 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1738 GCTCAAATCGAGGGAGGGAAGTTGCCAGACGATGTAGGAGATCTCATCCATTTGAG-ATA 1796 Query 1797 CCTGAGCGTGAGATTGACAAACGTGAAGGAACTTACATCATCTATTGGAAACTTAAAGTT 1856 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1797 CCTGAGCGTGAGATTGACAAACGTGAAGGAACTTACAACATCTATTGGAAACTTAAAGTT 1856 Query 1857 GATGATTACTCTAGACTTGTTCGTGAAAGGGCAACTGTATATTCCAAACCAACTCTGGGA 1916 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1857 GATGATTACTCTAGACTTGTTTGTGAAGGGGCAACTGTATATTCCAAACCAACTCTGGGA 1916 Query 1917 TTTTCCTGTTGGAAAGTGCAATCCAAGGGATCTTTTAGCAATGACAAGTCTTAGAAGATT 1976 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1917 TTTTCCTGTTGGAAAATGCAATCCAAGGGATCTTTTAGCAATGACCAGTCTTAGAAGATT 1976 Query 1977 GTCTATCAATCTTTCTTCGCAGAACACAGACTTCGTGGTGGTGTCTTCACTAAGTAAAGT 2036 ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| Sbjct 1977 GTCTATCAATCTTTCTTCGCAGAACACAGACTTCGAGGTGGTATCTTCTCTAAGTAAAGT 2036 Query 2037 CTTGAAACGTCTCCGTGGCTTGACAATAAACGTTCCATGCGAACCTATGCTTCCACCAGT 2096 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2037 CTTGAAACGTCTCCGTGGCTTGACAATAAACGTTCCATGCGAACCTATGCTTCCACCAGT 2096 Query 2097 AGATGTAACACAGTTGGTCTCTGCATTTACTAATCTCTGTGAACTGGAACT 2147 ||||||||||||||||| |||||||||||| |||||| |||||||||||| Sbjct 2097 TGATGTAACACAGTTGGTTTCTGCATTTACTGATCTCTCTGAACTGGAACT 2147 Score = 350 bits (189), Expect = 4e-95 Identities = 223/240 (93%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 2335 GAGAATCTAGAGGAGTGGACTGTAGAAGACGGTGCCATGATGCGTCTTGTCACCGTGGAG 2394 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 2341 GAGAATCTAGAGGAGTGGACTGTAGAAGACGGTGCCATGATGCGTCTTGTCTCCATGGAG 2400 Query 2395 CTAAAGTGTTGTAACAAACTGAAGTCAGTTCCTGAAGGAACGAGATTCCTAAAAAATCTA 2454 | ||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct 2401 TTGAAGTGCTGTAAGAAACTGAAGTCAGTTCCTGAAGGAACGAGATTCCTGAAGAATCTA 2460 Query 2455 CAAGAAGTAGAGATTGGGAACAGGACAAAGGCATTTAAGGACAAGCTAATCTCTGGTGGT 2514 |||||||| |||||| |||||| || ||||||||| ||||| ||||| |||||||||||| Sbjct 2461 CAAGAAGTGGAGATTAGGAACATGAAAAAGGCATTAAAGGATAAGCTGATCTCTGGTGGT 2520 Query 2515 GAAGATTTCTACAAGGTTCAACATGTGCCTTGTGTTGTTTTTGAGAACTGTGAACTTTAA 2574 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 2521 GAAGATTTCTACAAGGTTCAACATGTGCCTTGTGTTGTTTTCGAGAACTGTGACCTTTAA 2580 Score = 268 bits (145), Expect = 1e-70 Identities = 152/155 (98%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 2177 AACAGAGTTTCTCCTCTGATCTTGGTGCTCTACGTTTGTGGCAATGCGGATTAGTGGATG 2236 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2148 AACAGAG-TTCTCCTCTGATCTTGGTGCTCTACGTTTGTGGCAATGCGGATTAGTGGATG 2206 Query 2237 ACCCGTTTATGGTTCTCGAGAAGCTTCCAAACTTGAAGATTCTCCAACTGTTTGAAGGAT 2296 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2207 ACCCGTTTCTGGTTCTCGAGAAGCTTCCAAACTTGAAGATTCTCCAACTGTTTGAAGGAT 2266 Query 2297 CATTTGTAGGTAGTAAGCTTTGTTGTTCCAAGAAT 2331 ||||||||||||||||||||||||||||||| ||| Sbjct 2267 CATTTGTAGGTAGTAAGCTTTGTTGTTCCAAAAAT 2301 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97053944260 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5