BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50300.1 Length=1488 Score E Sequences producing significant alignments: (Bits) Value Ahg923473 jgi|Araly1|923473|scaffold_104754.1 1520 0.0 > Ahg923473 jgi|Araly1|923473|scaffold_104754.1 Length=985 Score = 1520 bits (823), Expect = 0.0 Identities = 886/916 (97%), Gaps = 5/916 (1%) Strand=Plus/Plus Query 118 TCCTACTAATGGATCAGTCTACGTTTCAAATCTCCCCTTAGGAACTGACGAGAATATGTT 177 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 47 TCCTACTAATGGATCAGTCTACGTTTCCAATCTCCCATTAGGAACTGACGAGAATATGTT 106 Query 178 GGCTGACTATTTTGGGACCATTGGGTTGCTTAAGAGAGACAAACGAACTGGTACTCCTAA 237 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 107 GGCTGAGTATTTTGGGACCATTGGGTTGCTTAAGAGAGACAAACGAACTGGCACTCCTAA 166 Query 238 GGTATGGCTGTACCGGGATAAAGAAACTGATGAGCCCAAGGGAGATGCTACTGTTACCTA 297 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 167 GGTATGGCTGTACCGGGATAAAGAGACTGATGAGCCCAAGGGAGATGCTACTGTTACCTA 226 Query 298 TGAGGATCCGCATGCTGCTTTGGCTGCTGTTGAATGGTTCAATAACAAAGATTTTCATGG 357 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 227 TGAGGATCCCCATGCTGCTTTGGCTGCTGTTGAATGGTTCAATAACAAAGATTTTCATGG 286 Query 358 AAACACCATTGGAGTTTTTATGGCCGAGTCGAAGA-ATAAAAATGCTGGTGATGCAGTTG 416 |||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||| Sbjct 287 AAACACCATTGGAGTTTTTATGGCTGAGTCG-AGACATAAAAATGCTGGTGATGCAGTTG 345 Query 417 AGTTTGTTGAATTCGATGGAGGTGCTGAGGAAACAAATGGAGGTGCTGGAAGGGGGAGGG 476 |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || | Sbjct 346 AGTTTGTTGAATTCGATGGAGGTGCTCAGGAAACAAATGAAGGTGCTGGAAGGGGTAGAG 405 Query 477 GTCAGGCTGATTCTTCGGCAAAGCCATGGCAGCAAGATGGTGACTGGATGTGCCCTAATA 536 ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 406 GTCAGGCTGATCCGTCGGCAAAGCCATGGCAGCAAGATGGTGACTGGATGTGCCCAAATA 465 Query 537 CAAGTTGTACAAATGTGAATTTTGCATTCCGTGGGGTTTGTAACCGCTGTGGAACTGCTA 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 CAAGTTGTACAAATGTGAATTTTGCATTCCGTGGGGTTTGTAACCGCTGTGGAACTGCTA 525 Query 597 GACCAGCTGGTGCATCTGGTGGCAGCATGGGTGCTGGT---CGTGGAAGGGGTCGAGGTG 653 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 526 GACCAGCTGGTGCATCTGGTGGCAGCATGGGTGCTGGTGGTCGTGGAAGGGGTCGAGGTG 585 Query 654 GAGGCGCTGATGGTGGGGCCCCGGGGAAGCAGCCCAGTGGTGCTCCTACTGGTCTCTTTG 713 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 586 GAGGCGCTGATGGTGGGGCACCTGGGAAGCAGCCCAGTGGTGCTCCTACTGGTCTCTTTG 645 Query 714 GTCCAAATGATTGGGCTTGTCCAATGTGTGGCAATGTCAACTGGGCGAAACGTCTAAAAT 773 |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| Sbjct 646 GTCCAAATGATTGGGCTTGTCCAATGTGTGGCAATGTCAACTGGGCTAAGCGTTTAAAAT 705 Query 774 GTAATATCTGCAACACCAATAAACCTGGTCAGAATGAAGGTGGTGTGAGGGGAGGCCGTG 833 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 706 GTAATATCTGCAACACCAATAAACCTGGTCAGAATGAAGGTGGTGTGAGGGGAGGTCGTG 765 Query 834 GTGGTGGTTACAAGGAATTAGATGAACAAGAATTAGAGGAAACGAAGAGACGCAGGCGTG 893 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 766 GTGGTGGTTACAAGGAATTGGATGAACAAGAATTAGAGGAAACAAAGAGACGCAGGCGTG 825 Query 894 AGGCTGAAGAAGATGATGGTGAAATGTATGATGAGTTTGGGAATCTAAAGAAGAAGTACC 953 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 826 AGGCTGAAGAAGATGATGGCGAAATGTATGATGAGTTTGGGAATCTAAAGAAGAAGTACC 885 Query 954 GTGTTAAAACAAACCAAGCTGACACCAGACCTGCTGTTGCTGCTGGTCGTGCTGGGTGGG 1013 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 886 GTGTTAAAACAAGCCAAGCTGACACCAGACCTGCTGTTGCTGCTGGTCGTGCTGGGTGGG 945 Query 1014 AAGTCGAGGAACTAGG 1029 |||| ||||||||||| Sbjct 946 AAGTAGAGGAACTAGG 961 Score = 60.2 bits (32), Expect = 4e-08 Identities = 32/32 (100%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 87 TTTGATGAAATTGGATTACGATGGCTGGATAT 118 |||||||||||||||||||||||||||||||| Sbjct 1 TTTGATGAAATTGGATTACGATGGCTGGATAT 32 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55687938190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5