BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50450.1
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474174 jgi|Araly1|474174|fgenesh2_kg.1__4128__AT1G50450.1 2194 0.0
Ahg474173 jgi|Araly1|474173|fgenesh2_kg.1__4127__AT1G50440.2 156 5e-37
> Ahg474174 jgi|Araly1|474174|fgenesh2_kg.1__4128__AT1G50450.1
Length=1329
Score = 2194 bits (1188), Expect = 0.0
Identities = 1282/1329 (96%), Gaps = 0/1329 (0%)
Strand=Plus/Plus
Query 10 GGGAGGGAGAGAGAATGACTCGAGCTCTGCTGCTGCAACCGTACAGAGCGACGGTGCGAG 69
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGGAGGGAGAGAGAATGGCTCGAGCTCTGCTGCTGCAACCGTACAGAGCGACGGTGCGAG 60
Query 70 CAGCTTCATCTAGGGAAACGCAATACGACGGCGTTCCGGAGGTTAAGTTCTCGGATCCTA 129
||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CAGCTTCATCTAGCGAAACGAAATACGACGGCGTTCCGGAGGTTAAGCTCTCGGATCCTA 120
Query 130 GCCGGAACTATCGGGTCTTGGTGTTGGGTGGAACGGGTCGGGTCGGTGGGTCTACTGCTA 189
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 CCCGGAACTACCGGGTCTTGGTGTTGGGTGGAACGGGTCGGGTCGGCGGGTCTACTGCTA 180
Query 190 CTGCTCTTTCTAAGCTATGTCCTGAGCTAAAAATCGTCGTCGGTGGACGCAACAGAGAGA 249
||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGCTCTCTCTAAGTTATGTCCCAAGCTAAAAATCGTCGTCGGTGGACGCAACAGAGAGA 240
Query 250 AAGGTGAAGCAATGGTGGCTAAGCTGGGAGAGAATTCTGAATTTTCTCAAGTAGATATCA 309
|||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 241 AAGGTGAAGCAATGGTGGCTAAATTGGGAGAGAATTCTGAGTTTGCTCAAGTAGATATCA 300
Query 310 ATGATGCTAAGATGCTTGAGACAAGTTTAAGAGACGTTGATCTTGTAGTCCATGCCGCTG 369
|||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 ATGACACTAAGATGCTTGAAACAAGTTTAAGAGACGTAGATCTTGTAGTCCATGCCGCTG 360
Query 370 GACCATTCCAACAAGCACCTCGATGCACTGTTCTTGAAGCTGCCATAAAGACCAAGACTG 429
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GACCATTCCAGCAAGCTCCTCGATGCACTGTTCTTGAAGCTGCCATAAAGACCAAGACTG 420
Query 430 CATATCTCGATGTTTGTGATGACACAAGCTATGCTTTCCGTGCAAAATCTCTTGAAGCTG 489
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATATCTTGATGTTTGTGACGACACAAGCTATGCTTTCCGTGCAAAATCTCTTGAAGCTG 480
Query 490 AGGCAATTGCTGCGAATATTCCGGCGTTAACAACAGCTGGAATATATCCAGGAGTTAGCA 549
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGCAATTGCTGCGAATATCCCGGCGTTAACAACAGCTGGAATATATCCAGGAGTTAGCA 540
Query 550 ATGTGATGGCGGCTGAAATGGTCGCTGCAGCAAGAAGCGAAGATAAAGGAAAACCAGAGA 609
||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 541 ATGTGATGGCGGCAGAAATGGTCGCTGCAGCAATAAGCGAAGACAAAGGAAAACCAGAGA 600
Query 610 AATTGAGGTTCTCCTATTACACAGCAGGCACTGGCGGTGCAGGTCCTACAATATTAGCAA 669
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATTGAGGTTCTCTTATTACACAGCAGGCACTGGCGGTGCAGGTCCTACAATATTAGCAA 660
Query 670 CGAGTTTTCTACTTCTTGGAGAGGAAGTTACTGCATATAAACAAGGAGAGAAGGTAAAAC 729
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 CGAGTTTTCTACTACTCGGAGAGGAAGTTACTGCATATAAACAAGGAGAGAAGGTGAAAC 720
Query 730 TAAGACCCTACAGTGGAATGATAACCGTGGATTTCGGAAAAGGCATCCGGAAAAGAGATG 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TAAGACCCTACAGTGGAATGATAACCGTGGATTTCGGAAAAGGCATCCGGAAAAGAGATG 780
Query 790 TTTATCTTTTGAATTTGCCAGAGGTGAGATCAACTCATGAAGTTCTAGGAGTGCCAACTG 849
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 781 TTTATCTTTTGAATTTGCCAGAGGTTAGATCAACTCATGAAGTTCTAGGAGTGCCAACTG 840
Query 850 TCGTTGCTCGATTCGGCACAGCTCCTTTCTTCTGGAACTGGGGAATGGAGATAATGACAA 909
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 TCGTTGCTCGATTCGGCACAGCTCCTTTCTTTTGGAACTGGGGAATGGAGATAATGACAA 900
Query 910 AACTCTTACCATCGGAGGTCCTTAGAGACAGAACCAAAGTCCAACAAATGGTAGAGCTTT 969
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 AACTCTTACCATCGGAGGTCCTTAGAGACAGAACCAAAGTCCAACAAATGGTAGAGCTGT 960
Query 970 TTGACCCTGTCGTTAGAGCCATGGATGGCTTTGCTGGAGAGCGTGTCTCAATGAGGGTTG 1029
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 961 TTGACCCTGTCGTTAGAGCCATGGATGGCTTTGCTGGAGAGCGTGTCTCGATGAGGGTTG 1020
Query 1030 ATTTGGAGTGCTCGGATGGACGGACCACAGTTGGGTTATTTAGTCATAAAAAACTATCAG 1089
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1021 ACTTGGAGTGCTCGGATGGACGGACCACAGTTGGGTTATTTAGTCATAAAAAACTATCCG 1080
Query 1090 TATCCGTTGGAGTTTCGACCGCAGCTTTTGTTGCAGCAATGCTTGAAGGAAGCACACAAC 1149
|||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| |
Sbjct 1081 TATCCGTTGGAGTTTCAACCGCGGCTTTTGTTGTAGCAATGCTTGAAGGAAGCACACAGC 1140
Query 1150 CAGGGGTTTGGTTTCCAGAAGAGCCTCAAGGGATCGCAGTGGAAGCAAGGGAAGTTCTTC 1209
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1141 CAGGGGTTTGGTTTCCAGAAGAGCCTCAAGGGATCGCAGTAGAGGCAAGGGAAGTTCTTC 1200
Query 1210 TCAAACGTGCATCACAAGGAACATTCAATTTCATACTGAACAAGCCACCCTGGATGGTTG 1269
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1201 TCAAACGTGCATCACAAGGAACATTCAATTTCATACTGAATAAGCCACCCTGGATGGTTG 1260
Query 1270 AGACCGAGCCGAAGGAGGTGGTTTTAGGGATATACGTATGAGTTCGACTGAGGAAGAAGA 1329
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct 1261 AGACCGAGCCGAAGGAGGTGGTTTTAGGGATATATGTATGAGTTCGACCGAGGATGAAGA 1320
Query 1330 AACATAGAT 1338
|||||||||
Sbjct 1321 AACATAGAT 1329
> Ahg474173 jgi|Araly1|474173|fgenesh2_kg.1__4127__AT1G50440.2
Length=1221
Score = 156 bits (84), Expect = 5e-37
Identities = 105/115 (91%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 1305 GTATGAGTTCGACTGAGGAAGAAGAAACATAGA-TGATCATCGATACTTTACTTTGTAAA 1363
||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1221 GTATGAGTTCGACCGAGGATGAAGAAACATAGATTGATCATCGATACTTTACTTTGTAAA 1162
Query 1364 CCAATTTACTTCTGATATGTATACTCGAACAGATAAACATGTTCATCAGAAGATA 1418
||||||| | |||||| ||||||||| |||||||||||| ||||||| ||||||
Sbjct 1161 CCAATTTGCGTCTGATGTGTATACTCTTACAGATAAACATTTTCATCAAAAGATA 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5