BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50660.1 Length=2928 Score E Sequences producing significant alignments: (Bits) Value Ahg923516 jgi|Araly1|923516|scaffold_104797.1 3627 0.0 Ahg479559 jgi|Araly1|479559|fgenesh2_kg.3__2260__AT3G20350.1 1096 0.0 > Ahg923516 jgi|Araly1|923516|scaffold_104797.1 Length=2230 Score = 3627 bits (1964), Expect = 0.0 Identities = 2143/2229 (96%), Gaps = 14/2229 (1%) Strand=Plus/Plus Query 432 TATGGCGGTGATTACGTGATGAAAGTCACCGGAAAGCCGTATTCGACGGCGACATTACCG 491 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 TATGGCGGTGATTAAGTGATGAAAGTCACCGGAAAGCCGTATTCGACGGCGACATTACCG 62 Query 492 GCCTTTGAGTCGGATAAGAATCTCTTCTCTCACGGTCCAGATCTCAGAGCTATTCAAAGA 551 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 GCTTTTGAGTCGGAAAAGAATCTCTTCTCTCACGGTCCAGATCTCAGAGCTATTCAAAGA 122 Query 552 GCTACTACTGTCACTAAACGTCGAGCTAGGAACCCGAGTTTGACTCGTCAGCGAAGATCC 611 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 123 GCTACTACAGTCACTAAACGTCGAGCAAGGAACCCGAGTTTGACTCGTCAGCGAAGATCC 182 Query 612 GGTCCTTCTGGTGGCAGACGAAGCCGGCCGGAGACTCCTTTATTGAAATGGAAGGTGGAG 671 | | |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 183 GTTGCTTCTGGTGGCAGACGAAGCCGGCCGGAGACTCCGCTATTGAAATGGAAGGTGGAG 242 Query 672 GATCGGAATAAAGAGAGAAGCGGCGTTGTAGAAGACGATGATTAC------GA-GGA--T 722 ||||||||||||||||||||||||||||| ||||||||||||||| || ||| | Sbjct 243 GATCGGAATAAAGAGAGAAGCGGCGTTGTCGAAGACGATGATTACGAGGATGATGGATGT 302 Query 723 -G--ATAATCACCAGGTTGCGAGGTCAGAGACTACTCGCCGCAAGGATCGGAGGAAAATC 779 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 AGTAATAATAACCAGGTTGCGAGGTCAGAGACTACTCGCCGCAAGGATCGGAGGAAAATC 362 Query 780 GCACGGCCTGTCTCTGTTAGGAAACTCGCCGCTGGGCTATGGCGGTTGCAAGTTCCTGAC 839 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 363 TCACGGCCTGTCTCTGTTAGGAAACTCGCCGCCGGGCTATGGCGGTTGCAAGTTCCTGAC 422 Query 840 GCGAGTTCCAGCGGCGGAGAAAGAAAGGGCAAAGAGGGGTTAGGGTTTCAGGGAAATGGT 899 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 423 GCGAGTTCTAGCGGCGGAGAAAGAAAGGGCAAAGAGGGGTTAGGGTTTCAGGGATGTGCT 482 Query 900 GGATACATGGGTGTTCCGTATCTTTATCACCATAGTGACAAACCCTCTGGTGGTCAGAGC 959 ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||| Sbjct 483 GGATACATGGGTGTTCCGTATCTTTATCATCATAGTGACAAACCTTCTGGCGGTCAAAGC 542 Query 960 AATAAGATAAGGCAGAACCCTAGTACTATTGCTACGACAAAAAATGGATTCTTGTGTAAG 1019 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 543 AATAAGATAAGGCAGAACCCTAGCACTATTGCTACGACAAAAAATGGATTCTTGTGTAAG 602 Query 1020 CTCGAACCTTCAATGCCATTTCCCCACTCAGCAATGGAGGGGGCGACAAAATGGGATCCT 1079 ||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 603 CTCGAGCCTTCAATGCCATTTCCCCACTCGGCCATGGAGGGGGCAACAAAATGGGATCCT 662 Query 1080 GTCTGCTTGGATACAATGGAGGAAGTACACCAAATATATAGCAACATGAAGCGTATTGAT 1139 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 663 GTCTGCTTGGATACAATGGATGAAGTACACCAAATATATAGCAACATGAAGCGTATTGAT 722 Query 1140 CAGCAAGTGAATGCTGTGTCATTGGTTTCTTCCCTTGAAGCAGAACTGGAGGAAGCACAT 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 723 CAGCAAGTGAATGCTGTGTCATTGGTTTCTTCCCTTGAAGCAGAACTGGAGGAAGCACAT 782 Query 1200 GCTCGCATAGAAGATCTCGAGAGCGAGAAGCGATCTCATAAAAAGAAGCTCGAGCAGTTC 1259 |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 783 GCTCGCATTGAAGATCTCGAGAGCGAGAAGCGATCTCATAAAAAGAAACTCGAGCAGTTT 842 Query 1260 TTGAGGAAAGTTAGCGAGGAGAGGGCTGCTTGGCGGAGCAGGGAGCATGAGAAGGTCCGA 1319 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 843 TTGAGGAAAGTTAGCGAGGAGAGGGCTGCTTGGCGGAGCAGGGAGCACGAGAAGGTCCGA 902 Query 1320 GCAATTATTGACGATATGAAAACTGATATGAACAGGGAGAAGAAAACCCGTCAGAGATTA 1379 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 903 GCAATCATTGATGATATGAAAACTGATATGAACAGGGAGAAGAAAACCCGTCAGAGATTA 962 Query 1380 GAAATCGTAAATCATAAACTAGTCAACGAGCTTGCAGATTCAAAGTTAGCCGTGAAGCGT 1439 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 963 GAAATCGTGAATCATAAATTAGTCAACGAGCTTGCAGATTCAAAGTTAGCCGTGAAGCGT 1022 Query 1440 TACATGCAGGACTACGAAAAGGAAAGGAAAGCAAGAGAATTGATTGAGGAAGTTTGCGAC 1499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 TACATGCAGGACTACGAAAAGGAAAGGAAAGCAAGAGAATTGATTGAGGAAGTTTGCGAC 1082 Query 1500 GAACTTGCAAAGGAAATAGGAGAAGATAAAGCTGAGATTGAAGCATTGAAGAGAGAATCC 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083 GAACTTGCAAAGGAAATAGGAGAAGATAAAGCTGAGATTGAAGCATTGAAGAGAGAATCC 1142 Query 1560 ATGAGCCTCAGAGAAGAAGTGGACGATGAAAGAAGAATGCTACAGATGGCTGAGGTCTGG 1619 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 1143 ATGAGCCTCAGAGAAGAAGTAGACGATGAAAGAAGAATGCTGCAGATGGCTGAGGTCTGG 1202 Query 1620 CGTGAGGAACGTGTCCAGATGAAGCTTATTGATGCCAAAGTAGCACTCGAGGAAAGGTAC 1679 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1203 CGTGAGGAACGTGTCCAGATGAAGCTTATTGATGCCAAAGTAGCACTTGAGGAAAGGTAC 1262 Query 1680 TCACAAATGAACAAGCTTGTAGGAGATTTGGAATCTTTCCTTAGGTCACGAGATATCGTG 1739 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1263 TCACAAATGAACAAGCTTGTAGGAGATTTGGAATCTTTCCTTAGGTCAAGAGATATTGTG 1322 Query 1740 ACAGATGTCAAAGAGGTGAGAGAAGCTGAGTTATTAAGAGAAACCGCAGCATCAGTTAAT 1799 ||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |||||| Sbjct 1323 ACAGATGTCAAAGAGGTTAGAGAGGCTGAGTTATTAAGAGAAACCGCGGCATTGGTTAAT 1382 Query 1800 ATCCAAGAAATCAAGGAATTTACGTATGTGCCTGCAAACCCGGATGATATCTACGCGGTG 1859 ||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| Sbjct 1383 ATCCAAGAAATCAAGGAATTTACATATGAGCCTTCAAACCCGGATGATATCTACGCGGTG 1442 Query 1860 TTTGAAGAAATGAATCTCGGTGAAGCCCATGATAGAGAAATGGAGAAATCTGTCGCTTAC 1919 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1443 TTTGAAGAAATGAATATCGGTGAAGCCCATGATAGAGAAATGGAGAAATCTGTTGCTTAC 1502 Query 1920 AGTCCAATCAGCCACGATTCTAAAGTTCACACGGTAAGTCTAGATGCCAATATGATGAAC 1979 ||||||| |||||| | ||||||||||||||||||||||| |||||||||| |||||||| Sbjct 1503 AGTCCAACCAGCCATGGTTCTAAAGTTCACACGGTAAGTCCAGATGCCAATTTGATGAAC 1562 Query 1980 AAGAAAGGGAGACACTCAGATGCTTATACTCACCAGAATGGAGACATTGAAGAAGATGAT 2039 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1563 AAGAAAGGGAGACACTCAGATGCTTTTACTCACCAGAATGGAGACATAGAAGAAGATGAT 1622 Query 2040 AGCGGTTGGGAAACAGTGAGCCACCTCGAAGAACAAGGATCGAGTTACTCACCAGATGGG 2099 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1623 AGCGGTTGGGAAACAGTGAGCCACCTCGAAGAACAAGGATCGAGTTACTCACCAGATGGG 1682 Query 2100 AGCATTCCTTCTGTGAACAACAAGAATCACAATCACCGACACAGCAACGCCTCCAGTGGT 2159 ||||||||||||||||||||||| |||||| |||||||| ||||||||||||| |||||| Sbjct 1683 AGCATTCCTTCTGTGAACAACAAAAATCACCATCACCGAGACAGCAACGCCTCGAGTGGT 1742 Query 2160 GGTACAGAGTCCTTAGGCAAAGTTTGGGATGATACAATGACTCCAACCACAGAGATAAGT 2219 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1743 GGTACAGAGTCCTTAGGCAAAGTTTGGGATGAGACAATGACTCCAACCACAGAGATAAGC 1802 Query 2220 GAAGTGTGTTCCATTCCAAGACGGTCATCCAAAAAGGTTTCATCAATAGCAAAGCTTTGG 2279 |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| Sbjct 1803 GAAGTGTGTTCCATTCCAAGGCGGTCATCCAAAAAAGTTTCATCGATAGCAAAGCTTTGG 1862 Query 2280 AGATCAACAGGTGCAAGCAATGGAGATAGAGATAGCAACTACAAGGTAATATCAATGGAA 2339 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1863 AGATCATCAGGTGCAAGCAATGGAGATAGAGATAGCAACTACAAGGTAATATCAATGGAA 1922 Query 2340 GGTATGAATGGAGGAAGGGTTTCAAATGGGAGAAAGTCAAGCGCGGGAATGGTTTCACCA 2399 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1923 GGTATGAATGGAGGAAGGGTTTCAAATGGGAGAAAATCAAGCGCGGGAATGGTTTCACCA 1982 Query 2400 GACAGAGTCTCGAGCAAAGGCGGATTTAGCCCGATGATGGATTTGGTTGGACAATGGAAC 2459 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1983 GACAGAGTCTCGAGCAAAGGCGGATTCAGCCCGATGATGGATTTGGTTGGACAATGGAAC 2042 Query 2460 TCTTCACCGGAATCTGCAAATCATCCTCATGTAAACCGAGGAGGAATGAAAGGTTGCATA 2519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2043 TCTTCACCGGAATCTGCAAATCATCCTCATGTAAACCGAGGAGGAATGAAAGGTTGCATA 2102 Query 2520 GAATGGCCTAGAGGTGCACAGAAGAGTAGTTTGAAGTCAAAACTCATTGAAGCACGAATC 2579 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2103 GAATGGCCTAGAGGTGCACAGAAGAATAGTTTGAAGTCAAAACTCATTGAAGCACGAATC 2162 Query 2580 GAAAGCCAAAAGGTTCAGTTAAAGCATGTCCTTAAACAGAGGATTTAGGAGCC-AAACCG 2638 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | Sbjct 2163 GAAAGCCAAAAGGTTCAGTTAAAGCATGTCCTTAAACAGAAGATTTAGGAGCCGAAACGG 2222 Query 2639 TTTTTGGTC 2647 |||| |||| Sbjct 2223 TTTT-GGTC 2230 > Ahg479559 jgi|Araly1|479559|fgenesh2_kg.3__2260__AT3G20350.1 Length=2480 Score = 1096 bits (593), Expect = 0.0 Identities = 955/1125 (85%), Gaps = 43/1125 (4%) Strand=Plus/Plus Query 1004 TGGATTCTTGTGTAAGC-TCGAACCTTCAATGCCATTTCCCCACT-CAGCAATGGAGGGG 1061 ||||||||||||||||| | || ||||| || |||||||| |||| | || ||||||||| Sbjct 687 TGGATTCTTGTGTAAGCAT-GAGCCTTCGATTCCATTTCCTCACTGC-GCGATGGAGGGG 744 Query 1062 GCGACAAAATGGGATCCTGTCTGCTTGGATACAATGGAGGAAGTACACCAAATATA-TAG 1120 || |||||||||||||| | ||||||||||||| ||| |||||||||||||| || | | Sbjct 745 GCAACAAAATGGGATCCCATTTGCTTGGATACAAGGGATGAAGTACACCAAATTTACT-G 803 Query 1121 CAACATGAAGCG-T-ATTGATCAGCAAGTGAATGCTGTGTCA-TTGGTTTCTTCCCTTGA 1177 |||| || | || | | | |||| ||||||||| |||| ||| | || |||||| ||| Sbjct 804 CAACGTG-A-CGTTGAATAATCAACAAGTGAATTCTGTTTCACTAGG-TTCTTCTATTG- 859 Query 1178 AGCAG-AACTGGAGGAAGCACATGCTCGCA-TAGAAGATCTCGAGAGCGAGAAGCGATCT 1235 || | |||| ||||||| | |||| ||| || | || || ||||| |||||||||||| Sbjct 860 AGTTGAAACTCCAGGAAGCTCGTGCTTGCATTA-AGGACCTTGAGAGTGAGAAGCGATCT 918 Query 1236 CATAAAAAGAAGCTCGAGCAGTTCTTGAGGAAAGTTAGCGAGGAGAGGGCTGCTTGGCGG 1295 || ||||||||||| ||||||||| ||| ||||||||||||||| ||||| ||||||||| Sbjct 919 CAAAAAAAGAAGCTTGAGCAGTTCCTGAAGAAAGTTAGCGAGGAAAGGGCAGCTTGGCGG 978 Query 1296 AGCAGGGAGCATGAGAAGGTCCGAGCAATTATTGACGATATGAAAACTGATATGAACAGG 1355 ||||||||||||||||||||||||||||||||||| || |||||| |||| ||||||| | Sbjct 979 AGCAGGGAGCATGAGAAGGTCCGAGCAATTATTGATGACATGAAAGCTGACATGAACAAG 1038 Query 1356 GAGAAGAAAACCCGTCAGAGATTAGAAATCGTAAATCATAAACT-AGTCAACGAGCTTGC 1414 || ||||| || |||||||||||||||||||| |||| |||| | |||||| |||||||| Sbjct 1039 GAAAAGAAGACTCGTCAGAGATTAGAAATCGTCAATC-TAAAATTAGTCAATGAGCTTGC 1097 Query 1415 AGATTCAAAGTTAGCCGTGAAGCGTTACATGCAGGACTACGAAAAGGAAAGGAAAGCAAG 1474 ||||||||||||||| || |||||||||||||| || ||| || |||||||||| ||||| Sbjct 1098 AGATTCAAAGTTAGCAGTAAAGCGTTACATGCATGATTACCAACAGGAAAGGAAGGCAAG 1157 Query 1475 AGAATTGATTGAGGAAGTTTGCGACGAACTTGCAAAGGAAATAGGAGAAGATAAAGCTGA 1534 ||||||| |||| |||||||| || ||||||||||||||||||| ||||||||||| ||| Sbjct 1158 AGAATTGGTTGAAGAAGTTTGTGATGAACTTGCAAAGGAAATAGAAGAAGATAAAGTTGA 1217 Query 1535 GATTGAAGCATTGAAGAGAGAATCCATGAGCCTCAGAGAAGAAGTGGACGATGAAAGAAG 1594 |||||||||||||||||| |||||||||| |||||||| ||||| |||||||||||||| Sbjct 1218 GATTGAAGCATTGAAGAGTGAATCCATGAATCTCAGAGAGGAAGTAGACGATGAAAGAAG 1277 Query 1595 AATGCTACAGATGGCTGAGGTCTGGCGTGAGGAACGTGTCCAGATGAAGCTTATTGATGC 1654 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1278 AATGCTGCAGATGGCTGAGGTTTGGCGTGAGGAACGTGTCCAGATGAAGCTTATTGATGC 1337 Query 1655 CAAAGTAGCACTCGAGGA-AAGGTACTCACAAATGAACAAGCTTGTAGGAGATTTGGAAT 1713 ||||||| |||| ||||| ||| || |||||||||||||| |||||||||||||||||| Sbjct 1338 CAAAGTAACACTTGAGGACAAG-TATTCACAAATGAACAAACTTGTAGGAGATTTGGAAG 1396 Query 1714 CTTTCCTTAGGT-CACGAGATATCGTGACAGATGTCAAAGAGGTGAGAGAAGCTGAGTTA 1772 | ||||| | | || || ||| | | |||| ||| ||||||||||||| || || || Sbjct 1397 CCTTCCTC-GATTCAAGAAATA-C-T-ACAGGTGTGAAAGAGGTGAGAGTTGCGGAATTG 1452 Query 1773 TTAAGAGAAACCGCAGCATCAGTT-A-A-TATCCAAGAAATCAAGGAATTTACGTATGTG 1829 ||||||||||| || ||||||||| | | ||||||| ||||||||||||||||||||| Sbjct 1453 TTAAGAGAAACTGCTGCATCAGTTGATAATATCCAACAAATCAAGGAATTTACGTATGAA 1512 Query 1830 CCTGCAAACCCGGATGATATC-TACGCGGTGTTTGAAGAAATGAATCTCGG-TGAAGCCC 1887 |||||||| ||||| ||| || | | | |||||||||||||||| || || |||||||| Sbjct 1513 CCTGCAAAGCCGGACGATGTCCT-CATGTTGTTTGAAGAAATGAA-CTTGGGTGAAGCCC 1570 Query 1888 ATGATAGAGAAATGGAGAAATCTGTCGCTTACAGTCCAATCAGCCACGATTCTAAAGTTC 1947 | ||||||||||| ||| ||| ||| || |||||||| ||||||||| ||| |||| || Sbjct 1571 AGGATAGAGAAATCGAGCAATATGTTGCCTACAGTCCGGTCAGCCACGCTTCAAAAGCTC 1630 Query 1948 ACACGGTAAGTCTAGATGCCAATATGATGAACAAGAAAGGGAGACACTCAGA-TGCTTAT 2006 | |||||||||| ||||| |||| |||| ||||| | ||||||||||| || ||||| | Sbjct 1631 ATACGGTAAGTCCAGATGTCAATTTGATTAACAA-A--GGGAGACACTC-GAATGCTT-T 1685 Query 2007 -ACTCACCAGAATGGAGACATT-GAAGAAGATGATAGCGGTTGGGAAACAGTGAGCCAC- 2063 ||| | |||||||| || ||| ||||||||||| || || |||||||| |||||||| Sbjct 1686 CACTGATCAGAATGGTGA-ATTTGAAGAAGATGACAGTGGCTGGGAAACTGTGAGCCATT 1744 Query 2064 CTCGAAGAACAAGGATCGAGTTACTCACCAGATGGGAGCATTCCT 2108 || |||||||| ||||| |||||||| ||||||| |||||| ||| Sbjct 1745 CT-GAAGAACACGGATCCAGTTACTCTCCAGATGAGAGCATCCCT 1788 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 110537890990 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5