BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50840.1 Length=3569 Score E Sequences producing significant alignments: (Bits) Value Ahg474208 jgi|Araly1|474208|fgenesh2_kg.1__4162__AT1G50840.1 5437 0.0 Ahg929992 jgi|Araly1|929992|scaffold_302449.1 2047 0.0 Ahg930696 jgi|Araly1|930696|scaffold_303153.1 340 3e-92 > Ahg474208 jgi|Araly1|474208|fgenesh2_kg.1__4162__AT1G50840.1 Length=3499 Score = 5437 bits (2944), Expect = 0.0 Identities = 3347/3536 (95%), Gaps = 50/3536 (1%) Strand=Plus/Plus Query 19 TCTTCTTCTGCTTAAGCTTTCCTTCTCAGGCAGACCCACTTGCTTGAAACTAGCTCGGAA 78 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 TCTTCTTCTGCTTAAGCTTTCCTTCTCAGGCAGACCCACTTGCTTGAAACAAGCTCGGTG 60 Query 79 CGATAACGACAAAATTCGCCACCATAAACCCTATTTTTAATCTCCGACTCTGTCGTCACT 138 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 61 CGATAACGACAAAATTCGCCACCATAAACCCTATTTTTAATCTCCGACTCTGTGGACACT 120 Query 139 TCTCCTTCAAGCTGGGTAGATTAAGTTCGCTTATGGCCATGGGGGTTTCTCTTACTTCCC 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCTCCTTCAAGCTGGGTAGATTAAGTTCGCTTATGGCCATGGGGGTTTCTCTTACTTCCC 180 Query 199 ACAATAACcctcttcttcgccacttatctccttcctcttcctgggtttctcgttcctcct 258 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 181 ACAATAACCCTCTTCTTCGCCACTTATCTCCTTCCTCTTCTTGGGTTTCTCGTTCCTCCT 240 Query 259 ctcgcctctcttcttctccactcccttccttcctctttccttgccgtcgaacccttcttc 318 ||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 241 CTCGCTTCTCTTCTTCTCCACTCCCTTCCTTTCTCTTTCCTTGCCGTAGAACCCTTCTTC 300 Query 319 AAAGGAAACTAGCTTCCACTGATGGAAATGTCGGTTATT-GTACTACTACAGTTTGTCAG 377 |||||||| || ||||||| || |||||||||||||||| | |||||||||||||||||| Sbjct 301 AAAGGAAATTATCTTCCACAGAGGGAAATGTCGGTTATTCG-ACTACTACAGTTTGTCAG 359 Query 378 GGATTTCAGCATTCGGTTCATCAACGGTCGTCTTCTGTTGTGTTTAACGGAGAGTGGGAA 437 |||||||||||| ||| |||||||||||| |||||||||||| ||||||||||||||||| Sbjct 360 GGATTTCAGCATCCGGGTCATCAACGGTCATCTTCTGTTGTGCTTAACGGAGAGTGGGAA 419 Query 438 CTTCGATCGGAATCTAACAAGGTAAGGATGGTTCCTAAGATTATCAAGGTTGG-AAATCA 496 |||||||| ||||| |||||||||||||||||||||||||| ||||||| ||| |||||| Sbjct 420 CTTCGATCCGAATCCAACAAGGTAAGGATGGTTCCTAAGATAATCAAGG-TGGCAAATCA 478 Query 497 GACGGAGGTAGCCGAAACTCATCAAGTTCCTGGAACTGTAAGTGCTTGGAGGGAAGAAGC 556 |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GACGGAAGTTGCTGAAACTCATCAAGTTCCTGGAACTGTAAGTGCTTGGAGGGAAGAAGC 538 Query 557 TAATAAGCTTAGAGAAAGAAATGGTCAAATTGCTAGAAACCTTGATGACAATGGTTATTT 616 |||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| Sbjct 539 AAATAAGCTTAGAGAAAGAAATGGTCAGATTGCTAGAAACCTCGATGACAGTGGATATTT 598 Query 617 CAATGGCTCTGTCCCAATTATATCTAGTGCTCCGTCTTATGAAACCTCTCAGAAGATTGA 676 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CAATGGCTCTGTCCCAGTTATATCTAGTGCTCCGTCTTATGAAACCTCTCAGAAGATTGA 658 Query 677 TTATGAGTTCAAGCCCAGAGGGACCACTAGGTCCACTACTGCTACACTCAATAAGGAATT 736 |||||||||||| |||||| || || |||||||| |||||||||||||||||| Sbjct 659 TTATGAGTTCAAACCCAGA-GG-----TA---ACACTACTGTTACACTCAATAAGGAATT 709 Query 737 GATTGGCATTACCCAATCTGAACCTGTTGTGTCATTGCCAAGGAAGGGTTTAGATGTTGG 796 ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 710 GATTGGCGTTACCCAATCTGAACCTGTTGTGTCATTGCCAAGCAAGAGTTTAGATGTTGG 769 Query 797 GGATAATATGGATGTAAATCCTAAAGGAGAGGGAATACAGAGACCTCTTATAAGCGATAA 856 |||||||||||||||||||||| ||||| | || || ||||||||||||||||| || Sbjct 770 AGATAATATGGATGTAAATCCTAGTGGAGAAGCAAAACGGAGACCTCTTATAAGCGGGAA 829 Query 857 GTCTTCTGGTACCGCAAATGGAAACAAGAATACTGTTGCCATTTCCAAAGTGGAGAGAAG 916 |||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||| Sbjct 830 GTCTTCTGGTACCGCAAACGGCAACAAGAATACAGTTGCCATTTCCAAAGTGGAGAAAAG 889 Query 917 CACTGAACCTTCGAATGTCCGTGAAAACCTTGGGAAAATATATGACAAGGTTCTCATTGT 976 |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 890 CACTGAACCTTCCAATGTCCGTGAAAACCTTAGGAAAATATATGACAAGGTTCTCGTTGT 949 Query 977 TGATAATGTGCAAGCTGCGAAGGATACCGTGGCTAAGCTCGTGAATCAGTTTAGGAATCA 1036 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 950 TGATAATGTGCAAGCTGCGAAGGATACCGTGGCTAAGCTCATGAATCAGTATAGGAATCA 1009 Query 1037 TGTCCATTCCTGTGATACAGAGGTGTCCGGGATTGAGGTTAAGGAAGAAACGCCTGTCGA 1096 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1010 TGTCCATTCTTGTGATACAGAGGTGTCCGGGATTGAGGTGAAGGAAGAAACGCCTGTCGA 1069 Query 1097 CCACGGTGAATTAATATGTTTCAGTATTTACTGTGGGCCAGAAGCAGATTTTGGGAATGG 1156 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1070 CCACGGTGAATTAATATGTTTCAGTATTTACTGTGGGCCAGAAGCAGATTTTGGGTATGG 1129 Query 1157 AAAATCGTGCATCTGGGTTGATGTTCTTGGTGAAAATGGCAGGGAGGTGTTGGCCGAGTT 1216 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1130 AAAATCATGCATCTGGGTTGATGTTCTTGGTGAAAATGGCAGGGAGGTGTTGGCCGAGTT 1189 Query 1217 TAAACCATATTTTGAAGACTCGTTCATCAGAAAAGTCTGGCACAACTACAGTTTCGATAG 1276 |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1190 TAAACCGTATTTTGAAGACTCGTTCATCAAAAAAGTCTGGCACAACTACAGTTTCGATAG 1249 Query 1277 CCACATCATTAGGAACCATGGAATTGAGATTTCTGGTTTTCATGCCGACACTATGCACAT 1336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1250 CCACATCATTAGGAACCATGGAATTGAGATTTCTGGTTTTCATGCCGACACTATGCACAT 1309 Query 1337 GGCACGATTATGGGATTCTGCACGGCGGATAAAAGGTGGTTATTCGCTTGAAGCGCTTAC 1396 |||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||| Sbjct 1310 GGCACGATTATGGGATTCTGCACGACGGATAGAGGGTGGTTATTCGCTTGAAGCGCTTAC 1369 Query 1397 AAGTGACCCAAAAGTTCTTGGGGGCACACAGACAAAGGAGGAAGCTGAGTTCCTTGGTAA 1456 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1370 AAGTGACCCAAAAGTTCTTGGGGGCACACAGACAAAGGAGGAAGCTGATTTCCTTGGTAA 1429 Query 1457 AATTTCGATGAAGACTATTTTTGGCAAACGGAAACTGAAAAAAGATGGATCTGAAGGGAA 1516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1430 AATTTCGATGAAGACTATTTTTGGCAAACGGAAACTGAAAAAAGATGGATCTGAAGGGAA 1489 Query 1517 AATCGTTGTCATTCCCCCTGTTGAAGAGCTTCAGCGAGAAGATCGAGAGGCTTGGATTTC 1576 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1490 AATGGTTGTCATTCCCCCTGTCGAAGAGCTTCAGCGAGAAGATCGAGAGGCTTGGATTTC 1549 Query 1577 ATACTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAGCATGACAAAGAAACT 1636 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1550 ATATTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAGCATGACAAAGAAACT 1609 Query 1637 GCAATTGATGGATTGGCATCTTGATGGAAAGCCAGTTTTAGGAAGGACAATGTTGGATTT 1696 |||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 1610 GCAACTGATGGATTGGCGTCTTGATGGAAAGCCAGTTTTAGAAAGGACAATGTTGGATTT 1669 Query 1697 TTACCATGAGTTCTGGCGACCCTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGAT 1756 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1670 TTACCATGAGTTTTGGCGACCCTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGAT 1729 Query 1757 ACTTGTAGATAGAGAGTATCTTGCTGAGATAGAGAAAGTAGCCAAAGCGGAACAACAAGT 1816 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1730 ACTTGTAGATAGAGAGTATCTTGCTGAGATAGAGAAAGTAGCCAAAGCCGAACAACAAGT 1789 Query 1817 TGCTGGTAGTAGGTTTCGTAATTGGGCATCTAAGTATTGCCCCGATGCGAAGTATATGAA 1876 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1790 TGCTGGTAGTAGGTTTCGTAATTGGGCATCTAAGTATTGCCCTGATGCAAAGTATATGAG 1849 Query 1877 TATTGGCAGTGACACACAATTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACAGTC--A- 1933 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1850 TATTGGCAGTGACACACAATTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACAGTGTGAA 1909 Query 1934 TGACGAGGTGCTTCCAGTTGAAAAGCTCTTCAAAGTCCCCAATATTGATAAGGTTATTGA 1993 || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1910 TGGCGAGGTGCTTCCAGTTGAAAAGCTCTTCAAAATTCCCAATATTGATAAGGTTATTGA 1969 Query 1994 AGAAGGCaaaaaaaCACCGACGAAGTTTCGAAACATCAAACTGCATAGGATAAGTGATAG 2053 || ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct 1970 AGTAGGCAAAAAAACAGCGACGAAGTTTCGAAACATCAAACTGCATAGGATAACTGACAG 2029 Query 2054 CCCACTGTCAACGGAAAATTTTACTGCCAGTGGTTGGCCCTCTGTAGGTGGGGATGTTTT 2113 |||||||||||| |||||||| ||||||||||||||||| ||| || ||||||||||||| Sbjct 2030 CCCACTGTCAACTGAAAATTTAACTGCCAGTGGTTGGCCGTCTATAAGTGGGGATGTTTT 2089 Query 2114 GAAAGAGTTAGCTGGGAAAGTTTCTGCTGAATACGACTTTATGGATGATGTCTCAGATAT 2173 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2090 GAAAGAGTTAGCTGGGAAAGTTTCTGCTGAATACGACTTTATGGAAGATGTCTCAGATAT 2149 Query 2174 TTCTCTGGAAGAAGTTGTTGAGGATGATGATGTAGA--AA-CATCAGAAACACAAAAGTC 2230 ||||||||||||||||| |||||||||||||| ||| || | ||| ||||||||||||| Sbjct 2150 TTCTCTGGAAGAAGTTGCTGAGGATGATGATGCAGATCAAACTTCAAAAACACAAAAGTC 2209 Query 2231 CAAGACAGATGATGAAACCGACACATCTGCTTATGGAACAGCATATGTTGCATTTGGAGG 2290 ||||||||||| | ||||||||||||| |||||||||| |||||||||||| || ||||| Sbjct 2210 CAAGACAGATGTTCAAACCGACACATCCGCTTATGGAATAGCATATGTTGCCTTCGGAGG 2269 Query 2291 GGGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCCTCATTATGTGAAGTTTGCTCTAT 2350 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 2270 GGGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCGTCATTATGTGAAGTTTGCTCAAT 2329 Query 2351 AGACT-CTTTGATCTCAAATTTTATTCTTCCGTTACAGGGAAGTAATGTATCAGGCAAAG 2409 ||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2330 AGA-TGCTTTGATCTCAAATTTTATTCTTCCCTTACAGGGAAGTAATGTATCAGGCAAAG 2388 Query 2410 ATGGTCGCGTCCATTGCTCCCTTAATATCAATACAGAAACTGGGCGCTTATCAGCTAGAA 2469 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2389 ATGGTCGCGTCCATTGCTCCCTGAATATCAATACAGAAACTGGGCGCTTATCAGCTAGAA 2448 Query 2470 GGCCAAATTTGCAGAACCAACCTGCATTGGAGAAGGATCGGTACAAGATTCGTAAGGCCT 2529 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2449 GGCCAAATTTGCAGAACCAACCTGCTTTGGAGAAGGATCGGTACAAGATTCGTAAGGCCT 2508 Query 2530 TTGTAGCATCGCCTGGAAATACACTTGTTGTGGCTGATTATGGGCAGTTGGAACTTAGAA 2589 ||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 2509 TTGTAGCGTCACCTGGAAATACACTCGTTGTGGCTGATTATGGGCAGTTGGAACTCAGAA 2568 Query 2590 TTCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTTTTAAAGCAGGCGGAGATT 2649 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2569 TTCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTTTCAAAGCAGGCGGAGATT 2628 Query 2650 TCCACTCAAGGACAGCCATGAATATGTATCCACATGTTCGTGAAGCTGTAGAAAATGGGC 2709 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2629 TCCACTCAAGGACAGCCATGAATATGTATCCACATATTCGTGAAGCTGTAGAAAATGGGC 2688 Query 2710 AAGTGATCCTTGAATGGCATCCAGAACCTGGGGAAGACAAGCCACCTGTGCCGTTGTTAA 2769 |||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 2689 AAGTGATCCTCGAATGGCATCCACAACCTGGGGAAGACAAGCCACCCGTGCCGTTGTTAA 2748 Query 2770 AGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTTAACTTTTCAATTGCGTATG 2829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2749 AGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTTAACTTTTCAATTGCGTATG 2808 Query 2830 GGAAAACCGCGGTCGGGCTTTCTAGAGATTGGAAGGTCTCCACTA-AAGAAGCTCAGGAA 2888 ||||||||||| |||||||||||||||||||||||||||| | | |||| |||||||| Sbjct 2809 GGAAAACCGCGATCGGGCTTTCTAGAGATTGGAAGGTCTC-AGTTGAAGAGGCTCAGGAC 2867 Query 2889 ACAGTCGATCTCTGGTACAATGACAGGCAAGAAGTAAGGAAATGGCAAGAAATGCGTAAG 2948 |||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2868 ACAGTCAAACTCTGGTACAATGACAGGCAAGAAGTAAGGAAATGGCAAGAAAGGCGTAAG 2927 Query 2949 AAAGAAGCTATAGAAGATGGGTATGTACTCACTTTACTAGGAAGGTCTCGTAGATTTCCG 3008 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 2928 AAAGAAGCTATAGAAGATGGATATGTACGCACTTTACTAGGAAGGTCTCGTAGATTTCCG 2987 Query 3009 -GCGTCA-AAGTCACGTGCTCAGA-GAAATCATATCCAAAGAGCAGCAATCAACACTCCA 3065 | || | ||||||||||| |||| ||| ||||||||||||||||||||||||||||||| Sbjct 2988 AG-GT-ATAAGTCACGTGCGCAGAAGAA-TCATATCCAAAGAGCAGCAATCAACACTCCA 3044 Query 3066 GTCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTGGAAATATCGATAAATCAA 3125 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3045 GTCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTGGAAATATCGACAAATCAA 3104 Query 3126 CAGTTGAAGAAGCTTGGTTGGAGATTGCTTCTACAGATTCATGATGAAGTAATCTTGGAA 3185 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3105 CAGTTGAAGAAGCTTGGTTGGAGATTGCTTCTACAGATTCATGATGAAGTGATCTTGGAA 3164 Query 3186 GGACCAATTGAATCAGCGGAGATCGCAAAGGACATAGTTGTGGACTGTATGTCTAAGCCC 3245 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 3165 GGGCCAATTGAATCAGCGGAGATCGCCAAGGACATAGTTGTGGACTGTATGTCTAAACCC 3224 Query 3246 TTTAACGGAAGGAATATTCTCTCAGTCGATTTATCTGTTGATGCAAAATGTGCTCAAAAC 3305 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 3225 TTTAACGGAAGGAATATTCTCTCGGTCGATTTATCTGTTGATGCAAAATGTGCTCAGAAC 3284 Query 3306 TGGTATGCTGCCAAATAGAGAAGCTTAGAGACCGGCCGTAGTTGAAGGAAGCGATTTTTT 3365 ||||||||||||||||||| | | || || | || | | | | | ||||||| Sbjct 3285 TGGTATGCTGCCAAATAGA-A-G-TT-GA-A--GG----A----A-G-A-G--ATTTTTT 3324 Query 3366 GGGTATATTAAGGTTTGGGTTTTGTAAATGTTAGAAAGCCTTGAGAACGTTGAGCTGTGT 3425 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 3325 GGGTATATTAAGGTTTGGTTTTTGTAAATGTTAGAAAGCCTTGAGAACATTGAGCTGTGT 3384 Query 3426 AAATTGTTTTCTCAAACTCTAATCTTCTAACTTGACGATGTTTGAATGCAAAAGTGGTTA 3485 ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| Sbjct 3385 AAATTGTTTTCTCAA-CTCTAATCCTCTAACTTGACGATGTTTGAATGCAAATGTGGTTT 3443 Query 3486 AAGTAACTTGAGAACAATCATGATATGAATATTGTGGATTGCTTTGTGTAAAATGA 3541 ||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||| Sbjct 3444 AAGTAACTTAAGAACAATCATGATATTAATGTTGTGGATGGCTTTGTGTAAAATGA 3499 > Ahg929992 jgi|Araly1|929992|scaffold_302449.1 Length=3180 Score = 2047 bits (1108), Expect = 0.0 Identities = 2042/2486 (82%), Gaps = 91/2486 (4%) Strand=Plus/Plus Query 895 CCATTTCCAAAGTGGAGAGAA-GCACTGAACCT-TCGAATGTCCGTGAAAACCTTGGGAA 952 |||||||||| ||||| | || |||| ||||| ||||| ||||| | |||||| ||| Sbjct 710 CCATTTCCAATGTGGA-AAAATGCAC-CAACCTGTCGAAAGTCCGAGCAAACCTCAAGAA 767 Query 953 AATATATGACAAGGTTCTCATTGTTGATAATGTG-CAAGCTGCGAAGGATACCGTGGCTA 1011 ||||||| | | |||||| |||||||||||||| | || ||| ||||| |||||||||| Sbjct 768 AATATATAATAGGGTTCTTGTTGTTGATAATGTGTCTAG-TGCAAAGGAAACCGTGGCTA 826 Query 1012 AGCTCG-TGAATCAGTTTAGGAATCATGTCCATTCCTGTGATACAGAGGTGTCCGGGATT 1070 ||| | ||||||| | |||||||| ||||||| | || ||||||||||||||| ||||| Sbjct 827 TGCT-GATGAATCAATATAGGAATCTTGTCCATGCTTGCGATACAGAGGTGTCCAGGATT 885 Query 1071 GAGGTTAAGGA-AGAAACGCCTGTCGACCACGGTGA-ATTAATATGTTTCAGTATTTACT 1128 || || || || ||||| ||||| ||||| || || | | |||||||||||||| || | Sbjct 886 GATGTGAA-GACTGAAACACCTGTGGACCATGGGGAGA-TGATATGTTTCAGTATCTATT 943 Query 1129 GTGGGCCAGAAGCAGATTTTGGGA-ATGGAAAATCGTGCATCTGGGTTGATGTTCTTGGT 1187 |||| |||||||||||||| ||| | |||||||| || |||||||| ||||| ||||| Sbjct 944 GTGGATCAGAAGCAGATTTT-GGAGACGGAAAATCATGTATCTGGGTAGATGTGCTTGGC 1002 Query 1188 GAAAATGGCAGGGAGGTGTTGGCCGAGTTTAAACCATATTTT-GAAGACTCGTTCATCAG 1246 |||||||| ||||| | ||||| |||||||| |||| |||| || ||||| | ||| | Sbjct 1003 GAAAATGGAAGGGATATCTTGGCTGAGTTTAAGCCAT-TTTTCGAGGACTCATCCATAAA 1061 Query 1247 AAAAGTCTGGCACAACTACAG-TTTCGATAGCCACATCATTAGGAACCATGGAATTGAGA 1305 |||||| ||||| |||||||| ||| |||| ||||||||| || || ||||||| || Sbjct 1062 AAAAGTATGGCATAACTACAGCTTT-GATAACCACATCATCAGAAATTATGGAATCAAGC 1120 Query 1306 TTTCTGGTTTTCATGCCGACACTATGCACATGGCACGATTATGGGATTC-TGC-ACGGCG 1363 ||||||||||||||| || || ||||||||||||||||| |||||||| | | | | || Sbjct 1121 TTTCTGGTTTTCATGGTGATACGATGCACATGGCACGATTGTGGGATTCAT-CTA-GACG 1178 Query 1364 GATAAAAGGTGGTTATTCGCTTGAAGCGCTTACAAGTGACCCAAAAGTTCTTGGGGGCAC 1423 |||| ||||||||||| || ||||| |||||||||||||||| |||||||||||| || Sbjct 1179 GATATCGGGTGGTTATTCTCTCGAAGCACTTACAAGTGACCCAAGAGTTCTTGGGGGAAC 1238 Query 1424 ACAGACAAAGGAGGAAGCTGAGTTCCTTGGTAAAATTTCGATGAAGACTATTTTTGGCAA 1483 |||||||||||||||| || || |||||||||| || ||||||| ||||| || | Sbjct 1239 TGAGACAAAGGAGGAAGCAGAATTATTTGGTAAAATATCAATGAAGAAAATTTTCGG-TA 1297 Query 1484 ACGG-AAACTGAAAAAAGATGGATCTGAAGGGAAAATCGTTG-TCATTCCCCCTGTTGAA 1541 | || ||| |||||||||||||||| |||||| |||| | || ||||||| |||||| || Sbjct 1298 AGGGAAAATTGAAAAAAGATGGATCAGAAGGG-AAATTGGTGATCATTCCTCCTGTTAAA 1356 Query 1542 GAGCTTC-AGCGAGAAGATCGAGAGGCTTGGATTTCATACTCTGCCTTGGATGCGATAAG 1600 ||||| | | | || |||||||| ||||||||||| ||||| || |||||| ||||||| Sbjct 1357 GAGCTACAAATG-GAGGATCGAGAAGCTTGGATTTCCTACTCGGCGTTGGATTCGATAAG 1415 Query 1601 CACACTAAAGCTTTACGAGAGCATGACA-AAGAAACTGCAATTGATGGATTGGCATCTTG 1659 ||| ||||||||||| |||||||||| | ||| || ||||| || | | ||| ||||| Sbjct 1416 CACTCTAAAGCTTTATGAGAGCATGA-AGAAGCAATTGCAAGCGAAGAAATGGTTTCTTG 1474 Query 1660 ATGGAAAGCCAGTTTTAGGA-AGGACAATGTTGGATTTTTACCATGAGT-TCTGGCGACC 1717 ||||||| | | ||| | | || || ||||| ||||| ||||| || | | |||| ||| Sbjct 1475 ATGGAAATCTAATTTCAAAACAGAAC-ATGTTTGATTTCTACCAAGAATAT-TGGCAACC 1532 Query 1718 CTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGATACTTGTAGATAGAGAGTATCT 1777 |||||||||||||||| ||||||||| | ||||| || ||||||||||| || ||| | Sbjct 1533 TTTTGGTGAACTTCTTGCCAAAATGGAATCGGAAGGAATGCTTGTAGATAGGGATTAT-T 1591 Query 1778 T-GCTG-AGATAGAGAAAGTAGCCAAAGCGGAACAACAAGTTGCTGGTAGTAGGTTTCGT 1835 | || | |||| |||| ||||||||||| |||||| || |||||| | ||||| ||| Sbjct 1592 TGGC-GCAGATTGAGATTGTAGCCAAAGCAGAACAAGAAATTGCTGTTTCCAGGTTCCGT 1650 Query 1836 AATTGGGCATCTAAGTATTGCCCCGATGCGAAGTATATGAATATTGGCAGTGACACACAA 1895 | |||||| || ||| |||| || ||||||||| |||||||| ||||||||||| | ||| Sbjct 1651 AGTTGGGCTTCAAAGCATTGTCCAGATGCGAAGCATATGAATGTTGGCAGTGACTCGCAA 1710 Query 1896 TTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACA---GTCATGACGAGG-TGCTTCCAGT 1951 ||||| || |||||||||||||||||||| |||| || |||| |||| | |||||| | Sbjct 1711 TTGCGACAACTCTTTTTTGGTGGCATTTCTAACAGTTGTAATGATGAGGAT-CTTCCA-T 1768 Query 1952 -TGAAAAGCTCTTCAAAGTCCCCAATATTGATAAGGTTATTGAAGAAGGCaaaaaa-aCA 2009 |||||| || |||||||| |||||| | |||||||| |||||| |||| |||||| | | Sbjct 1769 ATGAAAAACTTTTCAAAGTTCCCAATGTGGATAAGGTGATTGAAAAAGG-AAAAAAGAGA 1827 Query 2010 -CCGACGAAGTTTCGAAACATCAAACTGCATAGGATAAGTGATAGCCCACTGTCAACGGA 2068 || || ||||| || || ||||||||||||||||| || || || || || | || || Sbjct 1828 GCC-ACAAAGTTCCGGAATATCAAACTGCATAGGATTAGCGACAGGCCTTTGCCCACTGA 1886 Query 2069 AAATTTTACTGCCAGTGGTTGGCCCTCTG-TAGGTGGGGATGTTTTGAAAGAGTTAGCTG 2127 ||| || |||||| || |||||||||| || |||| || ||||||| ||||||| Sbjct 1887 AAAGTTCACTGCCTCAGGCTGGCCCTCTGTTA-GTGGAGACACCTTGAAAGCCTTAGCTG 1945 Query 2128 GGAAAGTTTCTGCTGAATACGACTTTATGGATGATGTCTCAGATATTTCTCTGGAAG--A 2185 ||||||| ||||| | ||| |||| || || | || ||||||| || ||| |||| | Sbjct 1946 GGAAAGTCTCTGCAGGATATGACTATACAGAGGGCGTTTCAGATACTTGTCTAGAAGAAA 2005 Query 2186 A-GTTGTTGAGGATGA-TG-A--T-G-T---AGA--AA-CATCAGAAACACAAAAGTCCA 2232 | ||| || ||||| || | | | | ||| || | |||||||||| | |||| Sbjct 2006 ACATTGGAGATGATGATTGTATTTCGCTACCAGATGAAGTTTTAGAAACACAACACTCCA 2065 Query 2233 AGA-CAGATGATGAAACCGACACATCTGCTTATGGAACAGCATATGTTGCATTTGGAGGG 2291 | | || || |||| | |||||||||||||||||||| |||| || ||| ||||||||| Sbjct 2066 ATACCA-CTGTTGAATCAGACACATCTGCTTATGGAACTGCATTTGATGCGTTTGGAGGG 2124 Query 2292 GGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCCT-CATTATGTGAAGTTTGCTCTAT 2350 |||||||| ||||||||||| || |||||||||| || ||||||||||||||||||| || Sbjct 2125 GGTGAAAGTGGAAAGGAGGCCTGCCATGCTATTG-CTGCATTATGTGAAGTTTGCTCCAT 2183 Query 2351 AGACTCTTTGATCTCAAATTTTATTCTTCCGTTACAGGGAAGTAATGTATCAGGCAAAGA 2410 || || || || ||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct 2184 TGATTCCTTAATATCAAATTTTATTCTTCCTTTACAGGGAAGTAATGTGTCAGGAAAAGA 2243 Query 2411 TGGTCGCGTCCATTGCTCCCTTAATATCAATACAGAAACTGGGCGCTTATCAGCTAGAAG 2470 |||||| ||||| |||||||| ||||| || || ||||||||||||||||| |||||||| Sbjct 2244 TGGTCGTGTCCACTGCTCCCTGAATATTAACACTGAAACTGGGCGCTTATCGGCTAGAAG 2303 Query 2471 GCCAAATTTGCAGAACCAACCTGCATTGGAGAAGGATCGGTACAAGATTCGTAAGGCCTT 2530 ||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| Sbjct 2304 GCCAAATTTGCAGAACCAACCTGCATTGGAGAAAGATCGGTACAAGATCCGTCAGGCCTT 2363 Query 2531 TGTAGCATCGCCTGGAAATACACTTGTTGTGGCTGATTATGGGCAGTTGGAACTTAGAAT 2590 ||||||| ||||||||| ||||| |||| ||||||||||| ||| |||||||||| || Sbjct 2364 CATAGCATCACCTGGAAATTCACTTATTGTTGCTGATTATGGACAGCTGGAACTTAGGAT 2423 Query 2591 TCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTTTTAAAGCAGGCGGAGA-TT 2649 ||||||||||||| || |||| |||||||||| ||||||||| | ||| || ||||| || Sbjct 2424 TCTGGCACATCTTGCTAGTTGCAAAAGCATGAAGGAAGCTTTCATAGCTGGTGGAGACTT 2483 Query 2650 TCCACTCAAGGACAGCCATGAATATGTATCCACATGTTCGTGAAGCTGTAGAAAATGG-G 2708 || ||||||| ||||| |||||||||||||||||| |||||||||| || |||||||| | Sbjct 2484 TC-ACTCAAGAACAGCTATGAATATGTATCCACATATTCGTGAAGCAGTTGAAAATGGTG 2542 Query 2709 CAAGTGATCCTTGAATGGCATCCAGAACCTGGGGAAGACAAGCCACCTGTGCCGTTGTTA 2768 ||||| ||||||||||||||||| ||||||| |||| |||||||| ||||| ||||| Sbjct 2543 -AAGTGCTCCTTGAATGGCATCCACAACCTGGACAAGAGAAGCCACCAGTGCCATTGTTG 2601 Query 2769 AAGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTTAACTTTTCAATTGCGTAT 2828 ||||||||||||| ||| |||||||||||||| |||||||||||||| || ||||||||| Sbjct 2602 AAGGATGCCTTTGCTTCTGAGAGAAGAAAAGCAAAGATGCTTAACTTCTCGATTGCGTAT 2661 Query 2829 GGGAAAACCGCGGTCGGGCTTTCTAGAGATTGGAAGGTCTCCACTA-AAGAAGCTCAGGA 2887 ||||| || || | ||||| ||||||||||||||||| || | || |||||||||| || Sbjct 2662 GGGAAGACTGCTATTGGGCTGTCTAGAGATTGGAAGGTATCAA-TAGAAGAAGCTCAAGA 2720 Query 2888 AACAGTCGATCTCTGGTACAATGACAGGCAAGAAGTAAGGAAATGGCAAGAAATGCGTAA 2947 ||||| |||||||||| |||||||| |||||||| |||||||||||||| | || || Sbjct 2721 TACAGTTAATCTCTGGTATAATGACAGACAAGAAGTCCGGAAATGGCAAGAACTACGCAA 2780 Query 2948 GAAAGAAGCTATAGAAGATGGGTATGTACTCACTTTACTAGGAAGGTCTCGTAGATTTCC 3007 |||||| |||||| || ||||||||||||||||||| | |||||| |||||| ||| || Sbjct 2781 GAAAGAGGCTATACAAAATGGGTATGTACTCACTTTGTTGGGAAGGGCTCGTAAATTCCC 2840 Query 3008 GGCGTCAAAGT-CACGTGCTCAGAGAAATCATATCCAAAGAGCAGCAATCAACACTCCAG 3066 | | | || ||||||| || | ||| |||||| || ||||||||||||||||||| | Sbjct 2841 TGTAT-ACCGTTCACGTGCCCAAAAAAACCATATCGAACGAGCAGCAATCAACACTCCTG 2899 Query 3067 TCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTGGAAATATCGATAAATCAAC 3126 | ||||||||||| ||||||||||| ||||| || ||| |||| ||||| | |||||||| Sbjct 2900 TTCAGGGAAGTGCGGCTGATGTTGCTATGTGCGCTATGCTGGAGATATCAAAAAATCAAC 2959 Query 3127 AGT-TGAA-GAAGCTTGGTTGGAGATTGCTTCTACAGATTCATGATGAAGTAATCTTGGA 3184 || | || || ||||||||||| ||||||||| || ||||||||||||||||||||||| Sbjct 2960 -GTCTAAAAGA-GCTTGGTTGGAAATTGCTTCTTCAAATTCATGATGAAGTAATCTTGGA 3017 Query 3185 AGGACCAATTGAATCAGCGGAGA-TCGC-AAAGGACATAGTTGTGGACTGTATGTCT-AA 3241 |||||||| ||| ||||||| || | || |||| ||||||||||| |||| |||||| || Sbjct 3018 AGGACCAAATGAGTCAGCGGCGAAT-GCTAAAG-ACATAGTTGTGAACTGCATGTCTGAA 3075 Query 3242 GCCCTTTAACGG-AAGGAATATTCTCTCAGTCGATTTATCTGTTGATGCAAAATGTGCTC 3300 ||||| ||||| ||| |||||||||||||| || |||||||||||||| || ||||||| Sbjct 3076 -CCCTTCAACGGCAAG-AATATTCTCTCAGTGGACTTATCTGTTGATGCTAAGTGTGCTC 3133 Query 3301 AAAACTGGTATGCTGCCAAATA-GAG 3325 | ||||||||||||| ||||| ||| Sbjct 3134 AGAACTGGTATGCTGGAAAATAAGAG 3159 > Ahg930696 jgi|Araly1|930696|scaffold_303153.1 Length=227 Score = 340 bits (184), Expect = 3e-92 Identities = 194/199 (97%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1442 TGAGTTCCTTGGTAAAATTTCGATGAAGACTATTTTTGGCAAACGGAAACTGAAAAAAGA 1501 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2 TGAGTTCCTTGGTAAAATTTCGATGAAGACTATTTTTGGTAAACGGAAACTGAAAAAAGA 61 Query 1502 TGGATCTGAAGGGAAAATCGTTGTCATTCCCCCTGTTGAAGAGCTTCAGCGAGAAGATCG 1561 |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| Sbjct 62 TGGATCTGAAGGGAAAATGGTTGTCATTCCCTCTGTCGAAGAGCTTCAGCGAGAAGATCG 121 Query 1562 AGAGGCTTGGATTTCATACTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAG 1621 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 122 AGAGGCTTGGATTTCATATTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAG 181 Query 1622 CATGACAAAGAAACTGCAA 1640 ||||||||||||||||||| Sbjct 182 CATGACAAAGAAACTGCAA 200 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 134799923566 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5