BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50900.1 Length=793 Score E Sequences producing significant alignments: (Bits) Value Ahg950835 jgi|Araly1|950835|scaffold_802722.1 852 0.0 Ahg474212 jgi|Araly1|474212|fgenesh2_kg.1__4166__AT1G50910.1 652 0.0 Ahg950836 jgi|Araly1|950836|scaffold_802723.1 207 7e-53 > Ahg950835 jgi|Araly1|950835|scaffold_802722.1 Length=574 Score = 852 bits (461), Expect = 0.0 Identities = 525/555 (95%), Gaps = 8/555 (1%) Strand=Plus/Plus Query 56 GAAGCATTAAGAGAACAGCCATGG---CTTCTTCTTCAATCTCATTCTCCTGTGCACCTT 112 |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 1 GAAGCATTAAGAGACCAGCCATGGCTTCTTCTTCTTCAATCTCATTCTCCTGCGCACCTT 60 Query 113 CTTTGGCCACCTCACTCTTCTCCAC--C-ACTTCTTCTTCCCCAAGGCTGCTCTCCTCTA 169 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 61 CTTTGGCCACCTCACTCTTCTCCACTTCTTCTTCTTCTTCCCCAAGGCTGCTCTCCTCTA 120 Query 170 GATTTCTCGGAACCCGAAACTTAAAGCTTCGGATCCGACCTGCCAGACTAGGACCCTCCA 229 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 121 GATTTCTCGGAACCCGAAACTTAAAGCTTCAGATCCGACCTGCCAGACTCGGACCCTCCA 180 Query 230 ATGGTTCAAGAACCACTTGCTGGTTCAAGTTCGGCAAGAATGGTGTCGATGCTGAAAATG 289 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 181 ATGGTTCAAGAACCACTTGCTGGTTCAAGTTCGGCAAGAACGGTGTCGATGCTGAAAATG 240 Query 290 CCGGAATCTATGGCAGCCAGTCTCGAGATGATTTCGACAGAGACGACGTCGAACAGTATT 349 |||| ||||||||||| |||||||| |||||||||||||||||||| || |||||||||| Sbjct 241 CCGGTATCTATGGCAGTCAGTCTCGCGATGATTTCGACAGAGACGATGTTGAACAGTATT 300 Query 350 TCAACTACATGGGTATGCTTGCAGTAGAAGGAACCTATTCAAAGATGGAAGCTCTTCTTA 409 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 301 TCAACTACATGGGTATGCTTGCGGTAGAAGGTACCTATTCAAAGATGGAAGCTCTTCTTA 360 Query 410 ACCTAAACATTCACCCAGTTGATATCTTGTTGATGTTAGCCGCTACAGAAGGTGACAGAC 469 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 361 GCCTAAACATTCACCCAGTCGATATCTTGTTGATGTTAGCCGCTACAGAAGGTGACAGAC 420 Query 470 CTAAGATCGAGGAGCTTCTCAAAGCCGGTGCTGATTATTCGGTCAAGGACGCTGATGGAA 529 |||||||||||||||| |||||||| ||||||||||| || |||||||| |||||||||| Sbjct 421 CTAAGATCGAGGAGCTGCTCAAAGCTGGTGCTGATTACTCAGTCAAGGATGCTGATGGAA 480 Query 530 GAACCGCTATCGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGCTACT-CG 588 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 481 GAACCGCTATTGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGCTACAACG 540 Query 589 ACTCAAAAGGCTTGA 603 |||||||||||||| Sbjct 541 -CTCAAAAGGCTTGA 554 > Ahg474212 jgi|Araly1|474212|fgenesh2_kg.1__4166__AT1G50910.1 Length=1910 Score = 652 bits (353), Expect = 0.0 Identities = 424/457 (93%), Gaps = 9/457 (2%) Strand=Plus/Minus Query 343 CAGTATTTCAACTACATGGGTATGCTTGCAGTAGAAGGAACCTATTCAAAGATGGAAGCT 402 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1909 CAGTATTTCAACTACATGGGTATGCTTGCGGTAGAAGGTACCTATTCAAAGATGGAAGCT 1850 Query 403 CTTCTTAACCTAAACATTCACCCAGTTGATATCTTGTTGATGTTAGCCGCTACAGAAGGT 462 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1849 CTTCTTAGCCTAAACATTCACCCAGTCGATATCTTGTTGATGTTAGCCGCTACAGAAGGT 1790 Query 463 GACAGACCTAAGATCGAGGAGCTTCTCAAAGCCGGTGCTGATTATTCGGTCAAGGACGCT 522 ||||||||||||||||||||||| |||||||| ||||||||||| || |||||||| ||| Sbjct 1789 GACAGACCTAAGATCGAGGAGCTGCTCAAAGCTGGTGCTGATTACTCAGTCAAGGATGCT 1730 Query 523 GATGGAAGAACCGCTATCGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGC 582 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1729 GATGGAAGAACCGCTATTGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGC 1670 Query 583 TACT-CGACTCAAAAGGCTTGA----CTCC-G-CTTGGTTTTAATACACAGGAACAACAC 635 ||| || |||||||||||||| || | |||||| ||||||||||||||| |||| Sbjct 1669 TACAACG-CTCAAAAGGCTTGAAGAACTTGTGTCTTGGTATTAATACACAGGAACCACAC 1611 Query 636 AAGTTATGTTCTTGAGTTTTGAAATGTTTGTGTTTGCTAGAACAAACTGTCTTTCTGTGT 695 |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| || Sbjct 1610 AAGTTATGTTCTTGGGTTTTGAAATGTTT-TGTTTGCTAGAACAAACTGTCTTTCTGGGT 1552 Query 696 TCCGCGGATGAGTAGATTATAAAATCCATCTTCTTCCTTTTTGTCTTTCTCGCCAGTTTC 755 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1551 TCCGCGGATGAGTAGATTATAAAATCCATCTTCTTCCTTTTTGTCTTTCTCGACTGTTTC 1492 Query 756 TTGTTTCTTCAATGGGGGTTGTTCTATGGTGTTTGGC 792 |||||||||| |||| ||| |||||||||||| ||| Sbjct 1491 TTGTTTCTTCCTTGGGCGTTCTTCTATGGTGTTAGGC 1455 > Ahg950836 jgi|Araly1|950836|scaffold_802723.1 Length=1412 Score = 207 bits (112), Expect = 7e-53 Identities = 133/143 (93%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 650 AGTTTTGAAATGTTTGTGTTTGCTAGAACAAACTGTCTTTCTGTGTTCCGCGGATGAGTA 709 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1412 AGTTTTGAAATGTTT-TGTTTGCTAAAACAAACTGTCTTTCTGTGTTCCGCGGATGAGTA 1354 Query 710 GATTATAAAATCCATCTTCTTCCTTTTTGTCTTTCTCGCCAGTTTCTTGTTTCTTCAATG 769 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | Sbjct 1353 GATTATAAAATCCATCTTTTTCCTTTTCGTCTTTCTCGCCAGTTTCTTGTTTCTTCCTTA 1294 Query 770 GGGGTTGTTCTATGGTGTTTGGC 792 ||||| |||||||||||| ||| Sbjct 1293 AGGGTTCTTCTATGGTGTTAGGC 1271 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29278400256 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5