BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51070.2
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474224 jgi|Araly1|474224|fgenesh2_kg.1__4178__AT1G51070.1 920 0.0
Ahg900883 jgi|Araly1|900883|Al_scaffold_0004_1533 359 3e-98
Ahg952030 jgi|Araly1|952030|scaffold_30700001.1 355 4e-97
> Ahg474224 jgi|Araly1|474224|fgenesh2_kg.1__4178__AT1G51070.1
Length=901
Score = 920 bits (498), Expect = 0.0
Identities = 560/591 (95%), Gaps = 0/591 (0%)
Strand=Plus/Plus
Query 451 AGTGTTGAAGTGGATGGCTTCCTTTGTGATGCAGATGTGATCAAAGAACCAAGTTCAAGG 510
||||||||||| |||||||||||||||||| ||||||||||||||||| || | || |||
Sbjct 193 AGTGTTGAAGTTGATGGCTTCCTTTGTGATTCAGATGTGATCAAAGAATCAGGCTCGAGG 252
Query 511 AAGAGGATCAAAACTGAATCTTGCACTGGTTCTAACTCGAAAGCTTGTAGGGAGAAACAA 570
|||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 253 AAGAGGATCAAAACTGAATCTTGCACTGGTTCTAGCTCTAAAGCTTTTAGGGAGAAACAG 312
Query 571 AGACGTGATAGACTAAATGACAAGTTTACGGAGTTGAGTTCCGTATTGGAACCTGGGAGA 630
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 313 AGACGTGATAGACTAAATGACAAGTTTTCGGAATTGAGTTCCATATTGGAACCTGGGAGA 372
Query 631 ACTCCAAAAACAGACAAGGTTGCTATTATCAATGATGCAATTCGCATGGTGAATCAAGCA 690
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 373 GCTCCAAAAACAGACAAGGTTGCTATTATCAATGATGCGATTCGCATGGTGAATCAAGCA 432
Query 691 AGAGATGAAGCGCAGAAACTAAAGGACTTGAACTCAAGCCTCCAGGAGAAAATCAAGGAG 750
||||| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||||
Sbjct 433 AGAGACGAAGCGCAGAAACTAAAGGACTTGAATTCAAACCTTCAGGAGAAAATCAAGGAG 492
Query 751 TTGAAGGATGAGAAGAACGAGCTGCGTGATGAGAAACAGAAGCTTAAGGTCGAGAAGGAG 810
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 493 TTGAAGGATGAGAAAAACGAGCTGCGTGATGAGAAACAAAAGCTAAAGGTCGAGAAGGAG 552
Query 811 AGAATCGATCAGCAACTGAAAGCTATTAAGACACAGCCTCAGCCTCAACCTTGTTTCTTA 870
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 553 AGAATCGATCAGCAGCTGAAAGCGATTAAGACACAGCCTCAGCCTCAACCTTGTTTCTTA 612
Query 871 CCAAATCCGCAAACACTCTCTCAAGCTCAAGCTCCTGGAAGCAAGCTTGTCCCTTTCACA 930
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CCAAATCCGCCAACACTTTCTCAAGCTCAAGCTCCTGGAAGCAAGCTTGTCCCTTTCACA 672
Query 931 ACTTATCCCGGCTTTGCAATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACCTCACAG 990
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 673 ACTTACCCCGGATTTGCAATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAG 732
Query 991 GACCATGTCCTTCGTCCTCCAGTTGCTTAAAGCTGCTGCTTCTCTCTACTA 1041
||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 733 GACCATGTCCTCCGTCCTCCAGTTGCTTAAAGCTGCTGCCTCTCTCTACTA 783
Score = 183 bits (99), Expect = 2e-45
Identities = 118/127 (93%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 129 GGGAATCAGGAGAATGGTGTCTCCGGAGAATACGAACTGGCTTAGTGATTACCCTTTGAT 188
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 69 GGGAATTAGGAGAATGGTGTCTCCGGAGAACACGAACTGGCTTAGTGATTACCCTTTGAT 128
Query 189 TGAAGGTGCTTTCTCTGATCAGAACCCCACTTTCCCTTGGCAGATAGATGGCT-CAGCTA 247
||| |||||||||||||||||||| || || |||||||||||||| |||| || ||||||
Sbjct 129 TGATGGTGCTTTCTCTGATCAGAATCCTACCTTCCCTTGGCAGATCGATG-CTTCAGCTA 187
Query 248 CTGTCAG 254
|||||||
Sbjct 188 CTGTCAG 194
Score = 110 bits (59), Expect = 3e-23
Identities = 65/68 (96%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 25 ACCATATCTCTTTTTTCTTCCGTTTTTCCACACATTGTCTCTACCTTTCCCTTTTTCAGA 84
||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 1 ACCATATCTCTTTTTTCTTCCGTTTTTCCACACTTTGTCTCTCCCTTTCTCTTTTTCAGA 60
Query 85 TTTGACCC 92
||||||||
Sbjct 61 TTTGACCC 68
> Ahg900883 jgi|Araly1|900883|Al_scaffold_0004_1533
Length=369
Score = 359 bits (194), Expect = 3e-98
Identities = 232/251 (92%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 514 AGGATCAAAACTGAATCTTGCACTGGTTCTAACTCGAAAGCTTGTAGGGAGAAACAAAGA 573
||||||||| | |||||||| ||||||||| ||||||||| ||||||||||||||||||
Sbjct 31 AGGATCAAATCGGAATCTTGTGCTGGTTCTAGCTCGAAAGCATGTAGGGAGAAACAAAGA 90
Query 574 CGTGATAGACTAAATGACAAGTTTACGGAGTTGAGTTCCGTATTGGAACCTGGGAGAACT 633
|||||||| |||||||||||||||||||| ||||||||| | ||||||||||||||| ||
Sbjct 91 CGTGATAGGCTAAATGACAAGTTTACGGAATTGAGTTCCATCTTGGAACCTGGGAGAGCT 150
Query 634 CCAAAAACAGACAAGGTTGCTATTATCAATGATGCAATTCGCATGGTGAATCAAGCAAGA 693
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 151 CCAAAAACAGACAAGGTTGCTATTATCAGTGATGCAATTCGCATGGTGAATCAAGTTAGA 210
Query 694 GATGAAGCGCAGAAACTAAAGGACTTGAACTCAAGCCTCCAGGAGAAAATCAAGGAGTTG 753
|| ||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 211 GACGAAGCACAGAAATTGAAGGACTTGAATTCAAGCCTCCAGGAGAAAATCAAGGAGTTG 270
Query 754 AAGGATGAGAA 764
|||||||||||
Sbjct 271 AAGGATGAGAA 281
> Ahg952030 jgi|Araly1|952030|scaffold_30700001.1
Length=398
Score = 355 bits (192), Expect = 4e-97
Identities = 230/249 (92%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 516 GATCAAAACTGAATCTTGCACTGGTTCTAACTCGAAAGCTTGTAGGGAGAAACAAAGACG 575
||||||| | |||||||| ||||||||| ||||||||| ||||||||||||||||||||
Sbjct 29 GATCAAATCGGAATCTTGTGCTGGTTCTAGCTCGAAAGCATGTAGGGAGAAACAAAGACG 88
Query 576 TGATAGACTAAATGACAAGTTTACGGAGTTGAGTTCCGTATTGGAACCTGGGAGAACTCC 635
|||||| |||||||||||||||||||| ||||||||| | ||||||||||||||| ||||
Sbjct 89 TGATAGGCTAAATGACAAGTTTACGGAATTGAGTTCCATCTTGGAACCTGGGAGAGCTCC 148
Query 636 AAAAACAGACAAGGTTGCTATTATCAATGATGCAATTCGCATGGTGAATCAAGCAAGAGA 695
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 149 AAAAACAGACAAGGTTGCTATTATCAGTGATGCAATTCGCATGGTGAATCAAGTTAGAGA 208
Query 696 TGAAGCGCAGAAACTAAAGGACTTGAACTCAAGCCTCCAGGAGAAAATCAAGGAGTTGAA 755
||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 209 CGAAGCACAGAAATTGAAGGACTTGAATTCAAGCCTCCAGGAGAAAATCAAGGAGTTGAA 268
Query 756 GGATGAGAA 764
|||||||||
Sbjct 269 GGATGAGAA 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44298829554
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5