BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51110.1 Length=1462 Score E Sequences producing significant alignments: (Bits) Value Ahg474226 jgi|Araly1|474226|fgenesh2_kg.1__4180__AT1G51110.1 2121 0.0 > Ahg474226 jgi|Araly1|474226|fgenesh2_kg.1__4180__AT1G51110.1 Length=1471 Score = 2121 bits (1148), Expect = 0.0 Identities = 1357/1456 (93%), Gaps = 22/1456 (2%) Strand=Plus/Plus Query 1 AAAGTTTAATCATTTTAACAAAAG-----C--TTCACAAGCAGCAGTAGACAGCAACAAT 53 ||| |||||||||||||||||||| | ||||||||||||| |||||||||||||| Sbjct 1 AAACTTTAATCATTTTAACAAAAGCTTCACATTTCACAAGCAGCACTAGACAGCAACAAT 60 Query 54 GGTGGCAGTCAGATTCTACGCTGTAGAGATGTCGCTACCATGTTTATGTCCATGCCCATC 113 ||||||| | ||||||||| | |||||||||||||||||||| ||||||||||||||||| Sbjct 61 GGTGGCACTTAGATTCTACACCGTAGAGATGTCGCTACCATGCTTATGTCCATGCCCATC 120 Query 114 ATCGCCGATTTCTCTTTCATTGTGTTCTCCGAGATTCAATCTTCTTAACACAACAAGCAG 173 ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 121 ATCGCCGATTTCTCTTTCATTGTGTTCTCCGAGATACAATCTTCTTAAGACAACAAGCAA 180 Query 174 GAGACTAGGTTTGTCTAGAAACTGTAGAACTCTGCGAATCAGTTGTTCATCTTCATCTAC 233 |||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct 181 GAGACTAGATTTGTCTAGAAACTGTAGAACTCTCCGCATCAGTTGTTCATCTTCCTCTAC 240 Query 234 TGTCACTGACCAAACTCAACAATCGTCTTTTAATGATGCTGAGTTGAAACTCATTGACGC 293 ||||||||||||||| |||||||||||||| || ||||||||||||||| | |||||||| Sbjct 241 TGTCACTGACCAAACACAACAATCGTCTTTCAACGATGCTGAGTTGAAATTGATTGACGC 300 Query 294 TTTGATCGGAATTCAAGGCCGTGGCAAATCTGCTTCTCCTAAACAGCTCAATGATGTTGA 353 ||| || |||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 301 TTTAATTGGAATTCAGGGCCGTGGCAAATCTGCTTCTCCTGAACAGCTCAATGATGTTGA 360 Query 354 ATCTGCTGTGAAAGTTCTTGAAGGTTTAGAAGGCATTCAAAATCCTACAGATTCTGACCT 413 ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| | Sbjct 361 TTCTGCTGTGAAAGTTCTTGAAGGTTTAGAGGGTATTCAGAATCCTACAGATTCTGACTT 420 Query 414 AATCGAAGGTCGTTGGCGATTGATGTTCACCACAAGACCTGGAACTGCATCTCCAATCCA 473 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 421 AATCGAAGGCCGTTGGCGATTGATGTTCACCACAAGACCTGGAACTGCATCTCCAATTCA 480 Query 474 AAGAACATTTACAGGAGTTGATGTGTTCACTGTGTTTCAAGATGTATACTTGAAGGCAAC 533 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| Sbjct 481 GAGAACATTTACAGGAGTAGATGTGTTTACTGTGTTTCAAGATGTATACTTGAAGACAAC 540 Query 534 AAACGATCCTCGTGTTTCAAACATTGTTAAATTCTCTGATTTCATTGGAGAGCTGAAAGT 593 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 541 AAACGATCCTCGTGTTTCAAACATTGTTAAATTCTCTGACTTCATTGGAGAGCTGAAAGT 600 Query 594 TGAGGCAGTTGCGTCGATCAAAGATGGGAAACGAGTTTTATTCCGTTTTGATAGAGCCGC 653 |||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| || Sbjct 601 TGAGGCAGCTGCGTCGATCAAAGATGGGAAACGGGTTTTATTCCGTTTCGATAGAGCTGC 660 Query 654 TTT-TGATTTGAAGTTCCTTCCTTTCAAAGTTCCATATCCAGTTCCTTTTAGACTTCTTG 712 ||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 661 TTTCT-CTTTAAAGTTCCTTCCTTTCAAAGTTCCATATCCAGTTCCTTTTAGGCTTCTTG 719 Query 713 GTGATGAAGCAAAAGGTTGGCTAGATACTACTTATTTGTCGCCTTCAGGTAACCTTAGGA 772 ||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||| Sbjct 720 GTGATGAGGCAAAAGGTTGGTTAGATACTACGTATTTGTCGCCTTCAGGAAACCTTAGGA 779 Query 773 TTTCTAGGGGAAACAAGGGAACAACGTTTGTTCTTCAGAAAGAAACCGTGCCTAGGCAGA 832 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 780 TTTCAAGGGGAAACAAGGGAACAACGTTTGTTCTTCAGAAAGAAACGGTGCCTAGGCAGA 839 Query 833 AATTGTTAGCCACCATATCTCAAGACAAAGGAGTAGCTGAGGCTATCGATGAGTTTCTTG 892 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 AATTGTTAGCCACCATATCTCAAGACAAAGGAGTAGCTGAGGCTATCGATGAGTTTCTTG 899 Query 893 CGTCTAATTCTAATTCCGCGGAAGATAATTATGAGCTTTTAGAAGGAAGTTGGCAAATGA 952 || ||||||||||| ||||||||| | |||| |||||||| |||||||| |||||||||| Sbjct 900 CGACTAATTCTAATCCCGCGGAAGTTGATTACGAGCTTTTCGAAGGAAGCTGGCAAATGA 959 Query 953 TTTGGAGTTCACAGATGTATACAGATAGTTGGATTGAAAATGCAGCAAATGGTCTTATGG 1012 |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 960 TTTGGAGTTCACAGATGTTTACAGATAGTTGGATTGAAAATGCAGCCAATGGTCTTATGG 1019 Query 1013 GAAGACAGATCATTGAGAAGGATGGGAGGATAAAGTTTGAAGTTAACATCATTCCGGCAT 1072 ||||||||||||| ||||||||||| || ||||||||||||||||||||||| || ||| Sbjct 1020 GAAGACAGATCATCGAGAAGGATGGAAGAATAAAGTTTGAAGTTAACATCATCCCAACAT 1079 Query 1073 TTAGATTCTCCATGAAAGGCAAATTCATAAAATCAGAAAGCAGTACATATGACTT-GAAG 1131 |||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||| Sbjct 1080 TTAGATTCTCCATGAAAGGCAAATTCATAAAATCAGAAAGCAGTACCTAT-AGTTTGAAG 1138 Query 1132 ATGGACGACGCAGCAATTATAGGCGGTGCATTTGGATATCCGGTCGATATAACAAACAAT 1191 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 ATGGACGACGCAGCAATTATAGGCGGTGCATTTGGATATCCGGTCGATATAACAAACAAC 1198 Query 1192 ATCGAGCTAAAAATTCTGTACACAGATGAGAAGATGAGGATAAGCCGAGGATTCGATAAC 1251 ||||| || |||||||||||||||||||||||| |||||||||| ||||||||||| || Sbjct 1199 ATCGAACTTAAAATTCTGTACACAGATGAGAAGTTGAGGATAAGTCGAGGATTCGACGAC 1258 Query 1252 ATTATCTTTGTGCACATCCGAGAAATTTAGCTGCATTGTTCTATCAGAACCTCTTATTTG 1311 |||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||| Sbjct 1259 ATTATCTTCGTGCACATCCGAGAAATTTAGCTGCATTGTTCTAT--G--C-TCTTATTTG 1313 Query 1312 AACATATGaaaaaaaaTAGTATGTAAGAAACTGTCAAATGTTTTACAACAATGGAAGGTG 1371 ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 1314 AACATGTGAAAAAA--TAGTATGTAAGAAACTGTCAAATGCTTTACAACAATGGAAAGTG 1371 Query 1372 ATAGTTTAAATTTTCTCTG-T--TCATTAGtttttttGGATGTAACAGGAACCAGAAAAA 1428 || ||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1372 ATGGTTTAAATTTT-TCTGGTCATCATTAGTTTTTTTGGATGTAACAGGAACCAGAAAAA 1430 Query 1429 ACAAGAAACCACATGA 1444 |||||||||||||||| Sbjct 1431 ACAAGAAACCACATGA 1446 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54697591820 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5