BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51140.1
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474229 jgi|Araly1|474229|fgenesh2_kg.1__4183__AT1G51140.1 2302 0.0
> Ahg474229 jgi|Araly1|474229|fgenesh2_kg.1__4183__AT1G51140.1
Length=1626
Score = 2302 bits (1246), Expect = 0.0
Identities = 1527/1653 (92%), Gaps = 58/1653 (4%)
Strand=Plus/Plus
Query 1 AAGTTTCTCTCACGTTCTCTTTTTTAATTTTAATTTCTCGCCGGAAACAAT-CTCATCTC 59
|||||||||||||||||||||||||||||||| |||||||||||| | ||| ||| ||||
Sbjct 1 AAGTTTCTCTCACGTTCTCTTTTTTAATTTTATTTTCTCGCCGGATA-AATCCTCCTCTC 59
Query 60 CCGGCGAACGAAACTTCCGGTGTGGTACTGC-AAACGGAG--aaaaaaaTAACCAAAGAA 116
|||||||||||||| ||| | |||||||| | |||||||| ||||||||||| ||||||
Sbjct 60 CCGGCGAACGAAACGTCC-G-GTGGTACT-CTAAACGGAGAAAAAAAAATAACAAAAGAA 116
Query 117 GAGAGAAACTCAAAAGCTACTAAGATGGAATCAGAATTCCAGCAACATCACTTCCTTCTC 176
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 117 GAGAGAAACTCAAAAGCTACAAAGATGGAATCAGAATTTCAGCAACATCACTTTCTTCTC 176
Query 177 CACGATCATCAACACCAGAGACCAAGAAACTCAGGATTGATTCGTTACCAATCAGCACCA 236
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 177 CACGATCATCAACATCAAAGACCTAGAAACTCAGGATTGATTCGTTACCAATCAGCACCA 236
Query 237 AGTTCGTACTTTTCGAGTTTCGGTGAATCAATCGAAGAGTTTTTAGATCGACCCACAAGT 296
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 237 AGTTCGTATTTTTCGAGTTTCGGTGAATCAATCGAAGAGTTTTTAGATCGACCCACGAGT 296
Query 297 CCTGAAACTGAGCGAATCTTATCTGGCTTTTTACAAACCACCGACACAAGCGACAACGTT 356
|||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 297 CCTGAAACAGAGCGAATCTTATCTGGGTTTTTACAAACCACCGACACAAGCAATAACGTT 356
Query 357 GATAGTTTCCTTCACCATACTTTTAACAGTGATGGAACTGAGAAGAAACCTCCGGAAGTT 416
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 357 GATAGTTTCCTTCACCATACTTTTAACAGTGATGGAACAGAGAAGAAACCTCCGGAAGTG 416
Query 417 AAAACAGAGGACGAAGATGCTGAAATTCCGGTGACTGCGACGGCGACGGCGATGGAGGTT 476
||||||||||| |||||| | || |||||||||||| | |||||||||||| |
Sbjct 417 AAAACAGAGGAGGAAGATACAGAGATTCCGGTGACT------GTGACGGCGATGGA-G-- 467
Query 477 GTTGTTTCCGGTGATGGTGAAATCTCAGTGAATCCTGAAGTATCGATTGGGTATGTGGCT 536
|||||||||||||| | || |||||||||||| ||| ||||||||||||||| |||
Sbjct 468 GTTGTTTCCGGTGA----G--ATTTCAGTGAATCCTCAAGAATCGATTGGGTATGTAGCT 521
Query 537 TCGGTTTC---G-----A-G---GAATAAGAGACCAAGAGAGAAAGATGATCGGACTCCG 584
|||||||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct 522 TCGGTTTCGAGGAATTTAGGTCAGAATAAGAGACCAAGAGAGAAAGATGATCGGACTCCG 581
Query 585 GTGAATAATCTAGCTCGTCATAATAGTTCACCGGCCGGATTATTTTCATCCATTGATGTT 644
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 582 GTGAATAATCTAGCTCGTCATAATAGTTCACCGGCCGGATTATTTTCCTCCATTGATGTT 641
Query 645 GAAACAGCTTATGCAGCTGTAATGAAAAGTATGGGAGGTTTTGGAGGAAGTAATGTGATG 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 642 GAAACAGCTTATGCAGCTGTAATGAAAAGTATGGGAGGTTTTGGAGGAAGTAATGTGGTG 701
Query 705 AGTACAAGCAATACTGAAGCTTCGTCTCTTACTCCTAGAAGCAAGTTACTTCCTCCTACT 764
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 AGTACAAGCAATAATGAAGCTTCGTCTCTTACTCCTAGAAGCAAGTTACTTCCTCCTACT 761
Query 765 TCTAGAGCGATGAGTCCGATCTCTGAGGTTGATGTTAAACCCGG-TTTCTCGTCTAGATT 823
|||||||||||||||||||| ||||||||||||||||| ||||| ||| ||| |||||||
Sbjct 762 TCTAGAGCGATGAGTCCGATATCTGAGGTTGATGTTAAGCCCGGGTTT-TCGGCTAGATT 820
Query 824 GCCTCCTCGGACGCTTTCCGGTGGGTTTAATCGTTCTTTTGGGAATGAAGGGTCTGCTTC 883
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 821 GCCTCCTCGGACACTTTCCGGTGGGTTTAATCGTTCGTTTGGGAATGAAGGGTCTGCTTC 880
Query 884 TTCCAAGCTTACAGCTCTTGCTAGGACCCAATCTGGAGGTCTAGATCAATACAAAACCAA 943
|| |||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 881 GTCTAAGCTTACTGCTATTGCAAGGACTCAATCTGGAGGTCTAGATCAATACAAAACCAA 940
Query 944 GGATGAGGATTCAGCAAGTAGACGTCCTCCTTTGGCACATCACATGAGTTTGCCCAAGTC 1003
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 941 GGAAGAGGATTCAGCAAGTAGACGTCCCCCTTTGGCACATCACATGAGTTTGCCCAAGTC 1000
Query 1004 TTTATCAGATATTGAACAGTTACTGTCAGATTCTATCCCATGTAAGATCAGAGCCAAGCG 1063
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1001 TTTATCAGATATTGAACAGTTACTGTCAGATTCTATCCCCTGTAAGATCAGAGCCAAGCG 1060
Query 1064 GGGTTGTGCAACTCATCCTCGAAGCATAGCCGAGAGGGTGAGAAGAACCAAGATCAGTGA 1123
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1061 GGGTTGTGCAACTCATCCTCGCAGCATCGCCGAGAGGGTGAGAAGAACCAAGATCAGTGA 1120
Query 1124 AAGAATGAGGAAGCTGCAAGACCTTGTTCCAAACATGGACACGCAAACAAACACAGCAGA 1183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 AAGGATGAGGAAGCTGCAAGACCTTGTTCCAAACATGGACACGCAAACAAACACAGCAGA 1180
Query 1184 CATGTTGGATCTTGCGGTTCAATACATCAAGGACCTGCAAGAACAAGTGAAGGCGCTCGA 1243
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1181 CATGTTGGATCTTGCGGTTCAGTACATCAAGGACCTGCAAGAACAAGTGAAGACGCTCGA 1240
Query 1244 AGAGAGTCGGGCAAGATGTAGATGCTCTAGTGCGTGAAACTAGAAGTGGGAGTATGCGCG 1303
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1241 AGAGACTCGGGCAAGATGTAGATGCTCTAGTGCGTGAAACTAGAAGTTGGAGTATGCGAG 1300
Query 1304 AGTGCTAGCCAGGGAGGGAGTTGTGCATAGAAGTATCG---G-TTCGGCCTTTGGAGAAA 1359
||||||||||||||||||| |||||||||||||||||| | ||| |||||||||||||
Sbjct 1301 AGTGCTAGCCAGGGAGGGATTTGTGCATAGAAGTATCGATCGATTCAGCCTTTGGAGAAA 1360
Query 1360 A-GTCGAAGATAGCAAAGTAGAGAAGAGATCATGAACAAAGCTAAATTTGGTGG-TGGTG 1417
| |||||||||||||||||||||||||||||||||| | ||||||| ||||||| || ||
Sbjct 1361 AAGTCGAAGATAGCAAAGTAGAGAAGAGATCATGAATAGAGCTAAAATTGGTGGATGATG 1420
Query 1418 GTGAAAAGGGTTTTTGTAAAGTTGGAACCtttttttGGTAGGGAAGAAAGTAGCAAGGTT 1477
||||||||||||| ||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1421 GTGAAAAGGGTTTA-GTAAAGTTGGAACCTTTTTTTGGTAGGGAAGAAAGTA--A-GTTT 1476
Query 1478 GTGTAATGGTCCGAACTCCAATGCTATTGTATGTT---CTTACATCCaaaaaaaaGAAAA 1534
||||||||||||||||||||| ||||||||||||| |||||| ||||| |||| |
Sbjct 1477 GTGTAATGGTCCGAACTCCAAAGCTATTGTATGTTGTTCTTACACCCAAAGAAAA-AT-- 1533
Query 1535 GCAGAAGAGAAGTGATGTACAATGAGAAGCTTATTTTATTGT---AACTCAAGAA-TAAT 1590
|||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1534 GCAGAACAGAAGTGATGTACAATGAGAAGCTTCTTTTATTGTTGTAACTCAAGAAATAAT 1593
Query 1591 TCAGG-TAATTAGTTTATTTTCTTTTGTTAGAA 1622
||||| ||||||||||||||||||||||| |||
Sbjct 1594 TCAGGGTAATTAGTTTATTTTCTTTTGTTGGAA 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60906301755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5