BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51340.2
Length=1870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314496 jgi|Araly1|314496|fgenesh1_pm.C_scaffold_1003276 2483 0.0
Ahg337281 jgi|Araly1|337281|fgenesh1_pg.C_scaffold_1003846 627 1e-178
> Ahg314496 jgi|Araly1|314496|fgenesh1_pm.C_scaffold_1003276
Length=1545
Score = 2483 bits (1344), Expect = 0.0
Identities = 1481/1548 (96%), Gaps = 6/1548 (0%)
Strand=Plus/Plus
Query 28 ATGTCTGAAGATGGCTACAACACAGATTTTCCAAGAAACCCTC-TATACATTTTCTTTAG 86
|||||||||||||| |||||||||||||||||||||||||||| || | || ||||||||
Sbjct 1 ATGTCTGAAGATGGATACAACACAGATTTTCCAAGAAACCCTCTTA-AAATCTTCTTTAG 59
Query 87 TGATTTCAGATCAGTTCTGAAATTTGATGAGCTCGGTTTAGAGATAGCGCGAATTGCTTT 146
|||||||||||||||| | ||| ||||||||||||||||||||||||| || || |||||
Sbjct 60 TGATTTCAGATCAGTTTTTAAACTTGATGAGCTCGGTTTAGAGATAGCTCGTATAGCTTT 119
Query 147 ACCCGCAGCACTTGCTTTAACAGCTGATCCTATTGCATCTCTAGTTGACACAGCCTTCAT 206
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 ACCTGCAGCACTTGCTTTAACAGCTGATCCTATTGCCTCTCTAGTTGACACAGCCTTCAT 179
Query 207 AGGCCAAATTGGTCCTGTAGAGCTTGCTGCAGTTGGAGTTTCTATTGCTTTATTCAACCA 266
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 AGGCCAAATTGGCCCTGTAGAGCTTGCTGCAGTTGGAGTTTCTATTGCTTTGTTCAACCA 239
Query 267 AGTTTCAAGAATTGCTATTTTCCCACTTGTTAGCATCACAACTTCCTTTGTAGCAGAAGA 326
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 240 AGTTTCAAGAATCGCTATTTTCCCACTCGTGAGCATCACAACTTCCTTTGTAGCAGAGGA 299
Query 327 AGATGCTTGTAGTTCTCAGCAAGACACAGTCCGAGATCATAAAGAATGTATTGAAATTGG 386
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 300 AGATGCTTGTAGTTCTCAGCAAGACACAGTCCAAGATCATAAAGAATGTATTGAAGCTGG 359
Query 387 TATCAACAATCCAACTGAGGAAACT-ATAGAATTGATTCCTGAAAAAC-ATAAAGATTCT 444
||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||
Sbjct 360 TATCAACAATCCAACTGAGGAAACTCA-AGAATTGATTCCTG-AAAACAATAAAGATTCT 417
Query 445 TTATCAGATGAATTTAAAACCAGTAGCAGTATCTTTAGTATTAGTAAACCTCCAGCCAAG 504
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTATCAGATGAATTTAAAACCGGTAGCAGTATCTTTAGTATTAGTAAACCTCCAGCCAAG 477
Query 505 AAAAGAAACATACCATCAGCTTCATCTGCTTTAATCATTGGAGGCGTTCTCGGCCTTTTT 564
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 478 AAAAGAAACATACCATCAGCTTCATCTGCTTTAATCATTGGAGGCTTTCTTGGCCTTTTC 537
Query 565 CAAGCCGTGTTTCTTATATCCGCAGCCAAACCTCTCTTGAGTTTCATGGGAGTAAAACAC 624
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 CAAGCTGTGTTTCTTATATCCGCAGCCAAACCTCTCTTGAGTTTCATGGGAGTTAAACAC 597
Query 625 GATTCTCCAATGATGAGACCTTCTCAGAGATATCTATCTTTAAGATCACTTGGTGCACCA 684
|||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 598 GATTCTCCAATGCTGAGACCTGCTCAGAGATATCTATCTCTGAGATCACTTGGTGCACCC 657
Query 685 GCTGTTCTACTCTCACTTGCGGCACAAGGCGTTTTCCGCGGATTTAAAGACACGACAACT 744
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 GCTGTTTTACTCTCACTCGCGGCACAAGGCGTTTTCCGCGGATTTAAAGACACCACAACT 717
Query 745 CCGTTATTCGCTACTGTGATTGGAGATGTAACAAACATAATACTCGACCCGATTTTCATA 804
||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 718 CCGCTATTTGCTACTGTGATTGGAGATGTCACAAACATAATTCTCGACCCGATTTTCATA 777
Query 805 TTTGTTTTCCGCCTAGGCGTAACAGGAGCAGCCACTGCTCATGTTATATCCCAATACCTT 864
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTCGTTTTCCGCCTAGGCGTAACAGGAGCAGCCACTGCTCATGTTATATCCCAATACCTT 837
Query 865 ATGTGTGGAATACTCTTGTGGAAACTGATGGGTCAAGTTGATATCTTCAACATGAGTACC 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATGTGTGGAATACTCTTGTGGAAACTGATGGGTCAAGTTGATATCTTCAACATGAGTACC 897
Query 925 AAACATCTTCAGTTCTGTAGATTCATGAAAAATGGCTTTCTTTTGCTGATGAGAGTAATT 984
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 898 AAACATCTTCAGTTCTGTAGATTCATGAAAAATGGCTTTCTTTTGCTAATGAGAGTAATC 957
Query 985 GCAGTAACATTCTGTGTAACTCTCTCCGCGTCACTAGCTGCACGAGAAGGATCAACTTCC 1044
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 958 GCGGTGACATTCTGTGTAACTCTTTCCGCGTCACTAGCTGCACGAGAAGGATCAACTTCC 1017
Query 1045 ATGGCAGCTTTCCAAGTTTGCTTGCAGGTTTGGTTAGCTACTTCACTTCTTGCAGACGGG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ATGGCAGCTTTCCAAGTTTGCTTGCAGGTTTGGTTAGCTACTTCACTTCTTGCAGACGGG 1077
Query 1105 TACGCCGTAGCTGGCCAGGCAATACTAGCGAGCGCGTTTGCCAAAAAAGACTACAAAAGA 1164
| ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1078 TTCGCTGTAGCTGGCCAGGCAATACTAGCGAGCGCGTTTGCGAAAAAGGACTACAAAAGA 1137
Query 1165 GCAGCAGCTACCGCCTCTCGTGTACTGCAGTTGGGATTGGTTCTCGGTTTTGTACTTGCG 1224
|| ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCTTCAGCTACTGCTTCTCGTGTCCTGCAGTTGGGATTGGTTCTCGGTTTTGTACTTGCG 1197
Query 1225 GTTATACTTGGAGCAGGATTGCATTTTGGAGCAAGAGTGTTTACAAAAGACGATAAAGTT 1284
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1198 GTTATACTTGGAGCAGGATTGCACTTTGGAGCAAGAGTATTTACGAAAGACGATAAAGTT 1257
Query 1285 TTACACCTAATTAGCATAGGACTTCCGTTTGTGGCAGGGACACAACCAATTAATGCCTTA 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTACACCTAATTAGCATAGGACTTCCGTTTGTGGCAGGGACACAACCAATTAATGCCTTA 1317
Query 1345 GCGTTTGTGTTCGATGGAGTTAACTTTGGAGCATCCGATTTCGGTTACGCCGCAGCTTCA 1404
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1318 GCGTTTGTGTTCGATGGAGTTAACTTTGGAGCATCCGATTTCGGTTATGCCGCAGCTTCA 1377
Query 1405 TTAGTAATGGTGGCTATAGTTAGCATCTTGTGTTTGCTCTTCCTCTCATCGACTCATGGT 1464
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1378 TTAGTAATGGTGGCTATAGTTAGCATCTTGTGTTTACTCTTTCTCTCATCGACTCATGGG 1437
Query 1465 TTTATTGGACTTTGGTTTGGTCTCACCATTTACATGAGTCTTAGAGCAGCCGTTGGATTC 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TTTATTGGACTTTGGTTTGGTCTCACCATTTACATGAGTCTTAGAGCAGCCGTTGGATTC 1497
Query 1525 TGGCGGATTGGGACAGGAACAGGACCTTGGTCTTTTCTTAGGAGCTGA 1572
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1498 TGGCGGATTGGGACAGGAACAGGACCTTGGTCATTTCTTAGGAGCTGA 1545
> Ahg337281 jgi|Araly1|337281|fgenesh1_pg.C_scaffold_1003846
Length=1224
Score = 627 bits (339), Expect = 1e-178
Identities = 419/458 (91%), Gaps = 4/458 (1%)
Strand=Plus/Plus
Query 504 GAAAAGAAACATACCATCAGCTTCATCTGCTTTAATCATTGGAGGCGTTCTCGGCCTTTT 563
|||||||| || |||||||||||||||||||| |||||||||||| |||| |||||| |
Sbjct 366 GAAAAGAATTATTCCATCAGCTTCATCTGCTTTGATCATTGGAGGCATTCTTGGCCTTCT 425
Query 564 TCAAGCCGTGTTTCTTATATCCGCAGCCAAACCTCTCTTGAGTTTCATGGGAGTAAAACA 623
|||||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||
Sbjct 426 TCAAGCTATGTTTCTTATATCCTCAGGGAAACCTCTCTTGAGTTTCATGGGAGTTAAACA 485
Query 624 CGATTCTCCAATGATGAGACCTTCTCAGAGATATCTATCTTTAAGATCACTTGGTGCACC 683
||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 486 CGATTCTCCAATGCTGAGACCTGCTCAGAGATATCTATCTTTAAGATCACTTGGCGCACC 545
Query 684 AGCTGTTCTACTCTCACTTGCGGCACAAGGCGTTTTCCGCGGATTTAAAGACACGACAAC 743
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 546 CGCTGTTCTTCTCTCACTCGCGGCACAAGGCGTTTTCCGCGGATTTAAAGACACCACAAC 605
Query 744 TCCGTTATTCGCTACTGTGATTGGAGATG-TAACAAACATAATACTCGACCCGATTTTCA 802
||| |||| ||| |||||||||||||||| | ||||| ||||||||||| || || ||||
Sbjct 606 TCCATTATACGCAACTGTGATTGGAGATGCT-ACAAATATAATACTCGATCCAATATTCA 664
Query 803 TATT-TGTTTTCCGCCTAGGCGTAACAGGAGCAGCCACTGCTCATGTTATATCCCAATAC 861
|||| | ||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 665 TATTCT-TTTTCGGTCTAGGCGTAACAGGAGCAGCCATTGCTCATGTTATATCCCAATAC 723
Query 862 CTTATGTGTGGAATACTCTTGTGGAAACTGATGGGTCAAGTTGATATCTTCAACATGAGT 921
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 724 CTTATGTGTGGAATACTTTTGTGGAAACTGATGGGTCAAGTTGATATCTTTAACATGAGT 783
Query 922 ACCAAACATCTTCAGTTCTGTAGATTCATGAAAAATGG 959
|||||||||||||| ||| ||||||||||||||||||
Sbjct 784 ACCAAACATCTTCAACTCTTTAGATTCATGAAAAATGG 821
Score = 566 bits (306), Expect = 3e-160
Identities = 376/408 (92%), Gaps = 12/408 (3%)
Strand=Plus/Plus
Query 1123 GCAATACTAGCGAGCGCGTTTGCCAAAAAAGACTACAAAAGAGCAGCAGCTACCGCCTCT 1182
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 826 GCAATACTAGCGAGCGCTTTTGCCAACAAAGACTACAAAAGAGCTGCAGCTACCGCTTCT 885
Query 1183 CGTGTACTGCAGTTGGGATTGGTTCTCGGTTTTGTACTTGCGGTTATACTTGGAGCAGGA 1242
||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 886 CGTGTACTGCAGTTGGGATTGGTTCTCGGGTTTCTACTCGCGGTTATACTTGGAGCAGGA 945
Query 1243 TTGCATTTTGGAGCAAGAGTGTTTACAAAAGACGATAAAGTTTTACACCTAATTAGCATA 1302
||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 946 TTGCACTTTGGAGCAAGAGTATTTACGAAAGACGATAAAGTTTTACACCTTATTAGCATA 1005
Query 1303 GGACTTCCGTTTGTGGCAGGGACACAACCAATTAATGCCTTAGCGTTTGTGTTCGATGGA 1362
|| || | | | ||||||||| || |||||||||||||||||||||||||||
Sbjct 1006 GG----CC---T-T--C--CGACACAACCTATCAATGCCTTAGCGTTTGTGTTCGATGGA 1053
Query 1363 GTTAACTTTGGAGCATCCGATTTCGGTTACGCCGCAGCTTCATTAGTAATGGTGGCTATA 1422
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1054 GTTAACTTTGGAGCATCCGATTTCGGTTACGCCGCAGCTTCATTAGTGATGGTGGCTATA 1113
Query 1423 GTTAGCATCTTGTGTTTGCTCTTCCTCTCATCGACTCATGGTTTTATTGGACTTTGGTTT 1482
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1114 ATTAGCATCTTGTGCTTGCTCTTTCTCTCATCGACTCATGGTTTTATTGGACTTTGGTTT 1173
Query 1483 GGTCTCACCATTTACATGAGTCTTAGAGCAGCCGTTGGATTCTGGCGG 1530
||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1174 GGTCTCACCATTTACATGAGTCTCAGAGCAGGCGTTGGATTCTGGCGG 1221
Score = 261 bits (141), Expect = 1e-68
Identities = 177/194 (91%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 28 ATGTCTGAAGATGGCTACAACACAGATTTTCCAAGAAACCCTCTATACAT-TTTCTTTAG 86
||||||||| ||| |||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 1 ATGTCTGAAAATGTCTACAACACAGATTTTCCAAGAAACCCTCTGTACATCTTT-TTTAG 59
Query 87 TGATTTCAGATCAGTTCTGAAATTTGATGAGCTCGGTTTAGAGATAGCGCGAATTGCTTT 146
||||||||| |||||| |||||||| ||||||||||||| || |||||||||||| | ||
Sbjct 60 TGATTTCAGGTCAGTTTTGAAATTTAATGAGCTCGGTTTGGAAATAGCGCGAATTAC-TT 118
Query 147 ACCC-GCAGCACTTGCTTTAACAGCTGATCCTATTGCATCTCTAGTTGACACAGCCTTCA 205
|||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 119 ACCCTGCAGCACTTGCTCTAACCGCTGATCCTATTGCATCTCTAGTTGACACAGCCTTCA 178
Query 206 TAGGCCAAATTGGT 219
|||| ||||| |||
Sbjct 179 TAGGACAAATCGGT 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70238411780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5