BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51350.1
Length=2441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923615 jgi|Araly1|923615|scaffold_104896.1 3317 0.0
> Ahg923615 jgi|Araly1|923615|scaffold_104896.1
Length=2045
Score = 3317 bits (1796), Expect = 0.0
Identities = 1963/2046 (96%), Gaps = 2/2046 (0%)
Strand=Plus/Plus
Query 74 ACCGGAGAAACTAAATCTCCGCCATGCCTACCACCACCACCTCCTCCGCTTCTTCCTCCT 133
|||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||
Sbjct 1 ACCGGAGAAACTAAATCTCCGCCATGCCTACCACCACCTCCTCCGCCTCTTCCTCCTCCT 60
Query 134 CCTCTGCCTCCGGTAACAATCGTCAATCCGATGTATTCTCTCGTCTCGCTTCTTCTGACC 193
|||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CCTCCGTCTCCGGTAACAATCGTCAAGCCGATGTATTCTCTCGTCTCGCTTCTTCTGACC 120
Query 194 CTGAAGTCAAGCTTAAGGCCCTTCGCGAGGTCAAAAACCAGATTATCGGAAATCGTACAA 253
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 121 CTGAAGTCAAGCTTAAGGCCCTTCGTGAGGTCAAAAACCAGATTATCGGAAATCGCACAA 180
Query 254 AAAAGCTCTCTTTTCTCAAACTCGGAGCTATTCCCGCCATAGCTTCTGTTCTCGCTGATG 313
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAAGCTCTCTTTCCTCAAACTCGGAGCTATTCCCGCCATAGCTTCTGTTCTCGCTGATG 240
Query 314 CTGACGATTCTGATGAATGTAATAACATCCTCGTGCAATCTGCGGCGGCTCTTGGCAGTT 373
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 241 CTGACGATTCTGATAAATGTAATAACATCCTCGTCCAATCTGCGGCGGCTCTTGGGAGTT 300
Query 374 TCGCTTGTGGGTTTGAAGCCGGTGTTCAAGCTGTTCTTGACGCCGGCGTTTTCCCTCATC 433
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 301 TCGCTTGTGGGTTTGAAGCCGGAGTTCAAGCTGTTCTTGACGCCGGAGTTTTCCCTCATC 360
Query 434 TTCTTCGTCTTCTCACTAATACTGACGAAAAGGTAGTAGATGCGGGGGCTCGTTCGCTTA 493
||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 361 TTCTTCGTCTTCTTACTAATCCTGACGAAAAGGTAGTAGATGCAGGGGCTCGTTCGCTTA 420
Query 494 GAATGATATTTCAATCTAATCAAGCTCCAAAGTATGATTTTCTTCAAGAGAAAAACATGG 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAATGATATTTCAATCTAATCAAGCTCCAAAGTATGATTTTCTTCAAGAGAAAAACATGG 480
Query 554 AGTTTCTTTTCTCGTTGTTGAATAGTGAGAATGAGAACGTTAGTGGGCTTGGTGCGAGTA 613
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 481 AGTTTCTTTTCTCGTTGTTGAATAGCGAGAATGAGAATGTTAGTGGGCTTGGTGCGAGCA 540
Query 614 TTATCGCTCATGCTTGTGGAACAAGTGTAGAGCAACGGGTTCTCTGTGAAGCTGGTGTCT 673
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 TTATTGCTCATGCTTGTGGAACAAGTGTAGAGCAACGGGTTCTTTGTGAAGCTGGTGTCT 600
Query 674 TGGAGAAGCTTGTTATCCTTCTTGATGGTTC-TTTAAGCCAAAGAGAAGCTTGTCTTGAA 732
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 601 TGGAGAAGCTTGTTATCCTTCTTGATGGTTCGTTTA-GCCAAAGAGAAGCTTGTCTTGAA 659
Query 733 TCTTTAGCTACGGTTTTGAAGAATAATCCTGAAGCTGTTTCTGATTTTGTTGGACTTGAG 792
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 660 TCTTTAGCGACGGTTTTGAAGAATAATCCTGAAGCTGTTTCGGACTTTGTTGGACTTGAG 719
Query 793 TCTGGGAAGTATTTTAATTCTGTGACTGAGTTAACAAAGGATAGGTATCCGAGGACTAGG 852
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCTGGGAAATATTTTAATTCCGTGACTGAGTTAACAAAGGATAGGTATCCGAGGACTAGG 779
Query 853 CTGCTTTCTTGTCTTTGCTTAGTTGTCATATACAACACTTCTCCATCTTATTTCATAAAC 912
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 780 CTGCTTTCTTGTCTCTGCTTAGTTGTCATATACAACACTTCTCCGTCTTATTTCGTAAAC 839
Query 913 ATGGGAACCAAATCAAGTTTGATAACTACTCTGCTTGAGCTTCTTAATGACCCTGGTCAA 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATGGGAACCAAATCAAGTTTGATAACTACTCTGCTTGAGCTTCTTAATGACCCTGGTCAA 899
Query 973 TCTGGAGATGATGCTGCCTTGGGTTTATCCTGTCTGATTGCGGAAAAAGAGGATTTACAA 1032
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 900 TCTGGAGATGATGCTGCCTTGGGTTTATCTTGTCTTATTGCGGAAAAAGAGGATTTACAA 959
Query 1033 CAGTTAGCTTACGAGGCCGATGCAATCAAGAATATTGTTGAGATCTTGAAGACAGGTAGT 1092
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 960 CAGTTAGCTTACGAGGCTGATGCGATCAAGAATATTGTTGACATCTTGAAGACAGGTAGT 1019
Query 1093 GAGCTCCAGTCTAAACGTCTTCAGGGTTTGTTTTTGTCTCTAGCTGAATTGTGCTCAAAG 1152
||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1020 GAGCTCCAGCCTAGACGTCTTGAGGGTTTGTTTTTGTCTCTTGCTGAATTGTGCTCAAAG 1079
Query 1153 CTAGAGGATTGCAGATGTAGCTTCCTGTCATTGCAGGTATTAGACCTGCTGACTGATGCG 1212
|| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1080 CTGGAGGATTGCAGGTGTAGCTTCCTGTCATTGCAGGTGTTAGACCTGCTGACTAATGCG 1139
Query 1213 CTAAGACACAAAGATGCTGATGTAAGAGCTGCGGCATGCATTTGCTTTAGAAACGCTGCT 1272
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1140 CTAAGACACAAAGATGCTGATGTAAGAGCTGCGGCGTGCATTTGCTTTAGAAACGCTGCT 1199
Query 1273 CGATCAGTCAAGAGTTTGAGTGCAGGACGATTCAACAGCGATCATGTTATGCTTCCTTTG 1332
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1200 CGATCAGTCAAGAGTTTGAGTGCAGGACGATTCAACAGCGATCATGCTATGCTTCCTTTG 1259
Query 1333 GTTCAGCTATTGCATGATCCATCTTCCTCTGTCCAGGTTGCAGTTCTTGGTGCTCTGAAC 1392
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1260 GTTCAGTTATTGCATGATCCATCTTCCTCTGTCCAGGTTGCAGTTCTTGGCGCTCTGAGC 1319
Query 1393 AATATAGTAATGGATTTTTCATCACCGAAGTCATCATTTATCGAGTATGGAGGGATAAAA 1452
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1320 AATATAGTATTGGATTTTTCATCACCAAAGTCATCATTTATCGAGTATGGAGGGATAAAA 1379
Query 1453 CAGCTTACTGAGTTGTCAAAATCAATGGATCCAAATACTCGGTGTAGCGCTTTGCGGGCT 1512
||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 1380 CAGCTTATTGAGTTGTCAAAATCAATGGATCTAAATGCTCGGTGTAGCGCTTTACGGGCT 1439
Query 1513 TTAAGGAACCTCATGTTCCTTGCCGACATTAAACGTAAAGAACTCTTTTATTCAGACGTT 1572
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1440 TTAAGGAACCTCATGTTCCTTGCCGACAATAAACGTAAAGAACTCTTTTATTCAGACGTC 1499
Query 1573 AAGGCTCAAGGACTTGCTTGTCTCATTAGTGATCCTGAGCCCCCAGTGCAAGAGCAAGCT 1632
|||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1500 AAGGCTCAAGGATTTGCTTGCCTCATTAGTGATCCTGAGCCCCCAGTACAAGAGCAAGCT 1559
Query 1633 TTGGCCCTCCTCCGTAATCTTGTTGATGGATGTATCAGCTCTATCGAGTTTGTATTTGAT 1692
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1560 TTGGCCCTCCTCCGTAATCTTGTTGACGGATGTATCAGCTCAATCGAGTTTGTATTTGAT 1619
Query 1693 GAAGATGGTCTTATCTTAGATACTGTTGGGAGGCAATTGAGGAAAGCTCCACAGGCACAA 1752
||||||||| ||||||||||||||||||||||||||||||| |||||||| || || |||
Sbjct 1620 GAAGATGGTATTATCTTAGATACTGTTGGGAGGCAATTGAGAAAAGCTCCGCAAGCTCAA 1679
Query 1753 ATGGCAATACAGGGAATGTATGTGCTCACGAATGTAGCGAGTGGGACTGAGTTACATAAA 1812
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1680 ATGGCAATACAGGGAATGTATGTGCTCGCGAATGTAGCGAGTGGGACTGAGTTACATAAA 1739
Query 1813 GAAGCGGTTATGGAGCAACTGTTTCCTCAAGCTAAAGCTGGATCAGAGAATTTCATGCTT 1872
||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1740 GAAGCAGTTATGCAGCAACTGTTTCCCCAAGCCAAAGCTGGATCAGAGAATTTCATGCTT 1799
Query 1873 AAGTTTTTGCAGAGCGACGAGAGCCAGTTACGGTCAGCAGCAGTCTGGACAATCATAAAC 1932
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1800 AAGTTTTTGCAGAGTGACGAGAGCCAGTTACGGTCAGCAACAGTCTGGACAATCATAAAC 1859
Query 1933 CTCATTAGTCCTTCAAGCCCCGGTGCATTTGATCGGCATGTGAAATTACGGAATGCGGGT 1992
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1860 CTCATTAGTCCTTCAAGTCCAGGTGCATTTGATCGGCATGTGAAATTACGGAATGCGGGT 1919
Query 1993 ATCATTCCCCAGTTAAAAAACATGGTCAATGACGCTTGCCTCGATGTTAAGATTCGCATC 2052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 ATCATTCCCCAGTTAAAAAACATGGTCAATGACGCTTGCCTCGATGTTAAGATTCGCATC 1979
Query 2053 AGGACTGTATTAGGCCAGTCCATGTCTTTTGGCGATAATTACTAAACACAGCGATATTGC 2112
|| || ||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 1980 AGAACCGTATTAGGCCAGTCCATGTCTTTTGGCGATAATTACTAAACACAGAGACATTAC 2039
Query 2113 TTTTCC 2118
||||||
Sbjct 2040 TTTTCC 2045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91987941675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5