BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51390.1
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923620 jgi|Araly1|923620|scaffold_104901.1 1328 0.0
> Ahg923620 jgi|Araly1|923620|scaffold_104901.1
Length=865
Score = 1328 bits (719), Expect = 0.0
Identities = 809/853 (95%), Gaps = 3/853 (0%)
Strand=Plus/Plus
Query 77 GAAGATCATGAAAGGGCTTACGAGGCTTCTCAATTCTCTTTCGCGACATACAGCTTCCGT 136
|||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 14 GAAGATCATGAAAGGGGTTACGAGACTTGTCAATTCTCTTTCGCGACATACAGCTTCTGT 73
Query 137 AACTTGTTCTCCATCTTCTTCTTCTCTTCTGATATCACGTCGCTCTCTGTTTATCTCGGC 196
|||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 74 AACTTGTTCT-C--CTTCTACTTCTCTTCTGATATCACGTCGCTCTCTGTTTATCTCGGC 130
Query 197 GGCGACACACTTTCCGGTGAATTTCTCGGAGTCGATAACAACTAATGCTTCTCGTAACTG 256
|||||| |||||||||| |||||| | ||| || | | | |||||||||||||| ||||
Sbjct 131 GGCGACGCACTTTCCGGCGAATTTATGGGATTCCAGAGCGACTAATGCTTCTCGCAACTC 190
Query 257 TTCGAGATCTTCTTCATTTCCCTTCAATTGGATCGAGCAAAGGAGGACAATGTTTATCCA 316
| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 191 TGCGAGATCTTCTTCATTTCCCCTGAATTGGATCGAGCAAAGGAGGACAATGTTTATCGA 250
Query 317 AACACAATCAACACCAAACCCCTCTTCTCTAATGTTTAGTCCTGGTAAACCAGTTATGGA 376
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 251 AACACAATCAACACCAAATCCTTCTTCTCTAATGTTTAATCCTGGTAAACCAGTTATGGA 310
Query 377 GATTGGAAGTGCTGACTTCCCTAATTCTCGCTCTGCTATGAGTTCACCTTTAGCTAAAGC 436
|||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 311 TATTGGAAGTGCTGATTTCCCTAATTCTCGTTCTGCTATGGGTTCACCTTTAGCTAAAGC 370
Query 437 CATTTTCGCCATTGATGGTGTAGTTCGAGTTTTCTATGGGTCAGATTTTGTTACTGTAAC 496
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 371 CATCTTCGCCATTGATGGTGTAGTTCGAGTTTTCTTTGGGTCAGATTTTGTTACTGTAAC 430
Query 497 AAAGTCAGATGATGTAACATGGGATATACTCAAGCCTGATATCTTTGCAGTGGTAATGGA 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AAAGTCAGATGATGTAACATGGGATATACTCAAGCCTGATATCTTTGCAGTGGTAATGGA 490
Query 557 CTTTTACTCTTCTGGTCAGCCTTTGTTTCTCGACTCACAAGCTACAGCTGCCAAGGATAC 616
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 491 CTTTTACTCTTCTGGTCAGCCTTTGTTTCTGGATTCACAAGCTACAGCTGCCAAGGATAC 550
Query 617 CGCTATTCATGAGGATGACTCTGAAACTGTAGCAATGATTAAGGAACTCTTGGAGACGCG 676
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CGCCATTCACGAGGATGATTCTGAAACTGTAGCAATGATTAAGGAACTCTTGGAGACGCG 610
Query 677 TATCCGACCATCAGTCCAAGATGATGGAGGGGACATCGAGTATTGTGGATTCGATACGGA 736
|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 611 TATCCGACCATCGGTTCAAGATGATGGAGGGGACATCGAGTATTGTGGATTTGATACGGA 670
Query 737 AACTGGTATAGTGAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGT 796
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 AACTGGTATAGTTAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGT 730
Query 797 TACTTTGAAATCCGGAATTGAGAATATGCTTATGCATTATGTTTCCGAGGTCAAAGGTGT 856
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 731 TACTTTGAAATCAGGAATTGAGAATATGCTTATGCATTATGTATCCGAGGTCAAAGGTGT 790
Query 857 TGAGCAAGAATTCGATGGTGAAGAGGAGGGAACATCTTCTGGTCCAATGGAGTAGAGTAA 916
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 791 TGAGCAAGAATTCGATGGTGAAGAGGAGGGAACATCGTCTGGTCCAATGGAGTAGAGTAA 850
Query 917 CAGAAATGCATCA 929
|||||||||||||
Sbjct 851 CAGAAATGCATCA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46776819159
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5