BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51400.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value Ahg923621 jgi|Araly1|923621|scaffold_104902.1 562 1e-159 > Ahg923621 jgi|Araly1|923621|scaffold_104902.1 Length=372 Score = 562 bits (304), Expect = 1e-159 Identities = 348/369 (94%), Gaps = 4/369 (1%) Strand=Plus/Plus Query 61 CACACGTGGGAATCCAACTTACCAATTGCAATGGCGTCAATGACCATGACATCTTCATTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CACACGTGGGAATCCAACTTACCAATTGCAATGGCGTCAATGACCATGACATCTTCATTT 60 Query 121 CTCCCTACCGTCTCAAACCTTCCGGCAAACATCTCCAGCAACAGCAGACGAAGCCTCACG 180 ||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| Sbjct 61 CTCCCCACCGTCTCAAAGCTTCCGGCAAACATATCCGGCAACAGCAGACGAAGCCTCACG 120 Query 181 GTGGTCAAAGCCTCCGGGAGTGAAAACACAACCAGCTTGGAGAACAAGAAGCAAGAACAG 240 |||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 121 GTGGTCAAAGCCTCCGCGAGCGAAAACACAACCAGCTTGGAGAACAAGAAACAAGAACAG 180 Query 241 AGCATGAAGATGAGGAGGGATCTTGTCTTCACAGCTGCAGCTGCAGCTGTGTGCTCCTTA 300 ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| Sbjct 181 AGCATGAAGATGAGGAGGGATCTGGTGTTCACAGCTGCAGCTGCGGCTGTGTGCTCCTTA 240 Query 301 GCTAAGGTGGCAATGGCAGACGATGAGCCAAAGAGAGGAACAGAAGCTGCCAAGAAGAAG 360 ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| Sbjct 241 GCTAAGGTGGCAATGGCAGACGAGGAACCAAAGAGAGGAACAGAGGCTGCCAAGAAGAAG 300 Query 361 TATGCTCCAGTCTGTGTCACAATGCCTACCGCCAAG-ATATGCCGTAACTGAGTTTGCTA 419 || ||||| |||||||||||||||||||| || ||| |||||||||||||||||| |||| Sbjct 301 TACGCTCCTGTCTGTGTCACAATGCCTACGGC-AAGGATATGCCGTAACTGAGTTCGCTA 359 Query 420 T-TTAACCA 427 | ||| ||| Sbjct 360 TCTTA-CCA 367 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20451395704 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5