BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G51400.1

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923621 jgi|Araly1|923621|scaffold_104902.1                        562    1e-159


> Ahg923621 jgi|Araly1|923621|scaffold_104902.1
Length=372

 Score =  562 bits (304),  Expect = 1e-159
 Identities = 348/369 (94%), Gaps = 4/369 (1%)
 Strand=Plus/Plus

Query  61   CACACGTGGGAATCCAACTTACCAATTGCAATGGCGTCAATGACCATGACATCTTCATTT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CACACGTGGGAATCCAACTTACCAATTGCAATGGCGTCAATGACCATGACATCTTCATTT  60

Query  121  CTCCCTACCGTCTCAAACCTTCCGGCAAACATCTCCAGCAACAGCAGACGAAGCCTCACG  180
            ||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct  61   CTCCCCACCGTCTCAAAGCTTCCGGCAAACATATCCGGCAACAGCAGACGAAGCCTCACG  120

Query  181  GTGGTCAAAGCCTCCGGGAGTGAAAACACAACCAGCTTGGAGAACAAGAAGCAAGAACAG  240
            |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  121  GTGGTCAAAGCCTCCGCGAGCGAAAACACAACCAGCTTGGAGAACAAGAAACAAGAACAG  180

Query  241  AGCATGAAGATGAGGAGGGATCTTGTCTTCACAGCTGCAGCTGCAGCTGTGTGCTCCTTA  300
            ||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct  181  AGCATGAAGATGAGGAGGGATCTGGTGTTCACAGCTGCAGCTGCGGCTGTGTGCTCCTTA  240

Query  301  GCTAAGGTGGCAATGGCAGACGATGAGCCAAAGAGAGGAACAGAAGCTGCCAAGAAGAAG  360
            ||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct  241  GCTAAGGTGGCAATGGCAGACGAGGAACCAAAGAGAGGAACAGAGGCTGCCAAGAAGAAG  300

Query  361  TATGCTCCAGTCTGTGTCACAATGCCTACCGCCAAG-ATATGCCGTAACTGAGTTTGCTA  419
            || ||||| |||||||||||||||||||| || ||| |||||||||||||||||| ||||
Sbjct  301  TACGCTCCTGTCTGTGTCACAATGCCTACGGC-AAGGATATGCCGTAACTGAGTTCGCTA  359

Query  420  T-TTAACCA  427
            | ||| |||
Sbjct  360  TCTTA-CCA  367



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20451395704


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5