BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51440.1
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474256 jgi|Araly1|474256|fgenesh2_kg.1__4210__AT1G51440.1 2604 0.0
> Ahg474256 jgi|Araly1|474256|fgenesh2_kg.1__4210__AT1G51440.1
Length=1714
Score = 2604 bits (1410), Expect = 0.0
Identities = 1633/1737 (94%), Gaps = 29/1737 (2%)
Strand=Plus/Plus
Query 52 AATCTAAATGGCTTCTCTATCTTTACCAATAACTCTCAAGAACCCAAGATTCTTCTCTTC 111
||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 1 AATCTAAATGGCTTCTCCATCATCACCAATAACTCTCAAAAACCCAAGATTCTTCTCTTC 60
Query 112 TTCTCCTCAAAACATCTTTAAAACCCAACCCCAAACCCTAGTTTTGACAACAAAGTTCAA 171
||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTCTCCTCACAAGATCTTTAAAACCCAACCCCAAACCCTAATTTTGACAACAAAGTTCAA 120
Query 172 GACTTGTTCCATCATTTGCTCATCTTCATGCACAAGCATAAGCTCTTCAACGACTCAACA 231
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACTTGCTCCATCATTTGCGCATCTTCATGCACAAGCATAAGCTCTTCAACGACTCAACA 180
Query 232 GAAGCAGTCAAATAAACAAACCCATGTGTCAGACAACAAACGagaagaa-a-aagcggaa 289
||||||| |||| |||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 181 GAAGCAGCCAAAGAAACAAACCCATGTGTCAGACAACAAACGAGAAGAAGATAA--GGAA 238
Query 290 gaagaagaagaagagaaagaagTTAGTCTTCGAGAAATTTGGAGAGAAGTACAAGGTTGC 349
| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 G-AG--GAAGAAGAAAAAGAAGTTAGTCTTCGAGAAATTTGGAGAGAAGTACAAGGTTGC 295
Query 350 AATAATTGGGAAGGACAACTAGATCCAATGAACAATCATCTTCGAAGAGAGATCATACGT 409
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AATAATTGGGAAGGACTACTAGATCCAATGAACAATCATCTTCGAAGAGAGATCATACGT 355
Query 410 TATGGCGAATTTGCTCAAGCTTGCTATGACTCATTCGACTTCGATCCTCACTCTAAATAC 469
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TATGGCGAATTCGCTCAAGCTTGCTATGACTCATTCGACTTCGATCCTCACTCTAAATAT 415
Query 470 TGTGGCTCTTGCAAATACCATCCTTCTGATTTCTTCTTAAACCTTGACCTACATCTCCAC 529
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 TGTGGCTCTTGCAAATACCATCCTTCTGATTTCTTCTCAAACCTTGACCTACATCTCCAC 475
Query 530 AAAGGCTACACCATAACACGTTACCTCTACGCTACATCCAACATAAACCTCCCAAACTTC 589
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 476 AAAGGCTACACCATAACACGTTACCTCTACGCTACATCCAACATCAACCTCCCAAACTTC 535
Query 590 TTCCAGAAATCAAAACTCAGCTCGATTTGGAGCCAACACGCGAACTGGATGGGTTTTGTT 649
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||
Sbjct 536 TTCCAGAAATCAAAACTCAGCTCCATTTGGAGCCAACACGCCAACTGGATGGGTTATGTT 595
Query 650 GCTGTAGCTACGGACGAAGAAGAGGTGAGTCGGCTCGGGAGACGTGACATAGTCATTGCT 709
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 596 GCTGTAGCTACGGACGAAGAAGAGGTGCGTCGGCTTGGGAGACGTGACATAGTCATTGCT 655
Query 710 TGGAGAGGCACAGTCACTTATCTCGAATGGATCTATGACTTAAAAGACATTCTTTGTTCA 769
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 656 TGGAGAGGCACAGTCACTTATCTCGAATGGATTTATGACTTAAAAGACATTCTTTGTTCA 715
Query 770 GCTAACTTCGGTGACGACCCATCTATCAAGATTGAATTAGGGTTTCATGACTTATACACC 829
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 716 GCTAACTTTGGTGACGACCCATCGATCAAAATTGAATTAGGGTTTCATGACTTGTACACC 775
Query 830 AAGAAAGAAGATTCTTGCAAATTCTCTTCCTTCTCGGCTCGGGAACAGGTTTTGGCTGAA 889
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 776 AAGAAAGAAGATTCTTGCAAATTCTCTTCCTTTTCGGCTAGGGAACAGGTTTTGGCCGAA 835
Query 890 GTCAAACGGCTTATTGAGTACTACGGTACCGAAGAAGAAGGTCACAAGACAAGCATCACC 949
|||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 836 GTCAAACGGCTTCTTGAGTACTACGGTACCGAAGAAGAAGGTCATGAGATAAGCATCACC 895
Query 950 GTGACAGGGCACAGCCTCGGCGCCTCTCTGGCTTTGGTCAGTGCTTATGATATCGCAGAG 1009
||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| || |||
Sbjct 896 GTGACTGGGCACAGCCTTGGCGCATCTCTTGCTTTGGTCAGTGCTTATGATATTGCGGAG 955
Query 1010 CTAAACTTGAATCACGTACCGGAGAACAACTATAAAATTCCAATTACTGTTTTCTCCTTC 1069
||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 956 CTAAACTTGAACCATGTACCGGAGAACAACTATAAAGTTCCAATTACTGTTTTCTCCTTC 1015
Query 1070 TCGGGACCTCGAGTAGGTAACTTGAGGTTCAAGGAACGATGTGACGAACTAGGGGTTAAA 1129
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1016 TCGGGACCTCGAGTAGGTAACTTGAGGTTCAAGGAACGATGCGACGAACTAGGGGTTAAA 1075
Query 1130 GTTCTGAGAGTCGTTAATGTACACGACAAGGTACCTTCTGTTCCAGGGATATTCACAAAC 1189
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GTTCTGAGAGTTGTTAATGTACACGACAAGGTACCTTCTGTTCCAGGGATATTCACAAAC 1135
Query 1190 GAGAAGTTTCAGTTTCAGAAGTATGTGGAAGAAAAAACATCATTCCCGTGGAGCTACGCG 1249
|| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1136 GAAAAGTTTCAGTTTCAGAAGTATGTAGAAGAAAAAACATCATTCCCATGGAGCTACGCG 1195
Query 1250 CACGTCGGCGTGGAGCTTGCCTTGGACCACAAGAAAAGCCCATTTCTGAAACCGACTAAG 1309
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1196 CACGTCGGTGTGGAGCTTGCCTTGGACCACAAGAAAAGCCCATTTCTGAAACAGACTAAG 1255
Query 1310 GATTTGGGTTGTGCACATAACCTAGAAGCTTTGCTTCATTTGGTGGATGGTTATCATGGA 1369
||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||||
Sbjct 1256 GATTTGGGTTGTGCACATAACCTAGAAGCTTTGCTTCATCTAGTAGATGGATATCATGGA 1315
Query 1370 AAAGACGAAGAAGCAGAGAAGAGATTTTGTTTGGTGACAAAGCGAGACATAGCTTTAGTG 1429
||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1316 AAAGACGAAGAAGCACATAAGAGATTCTGTTTGGTGACAAAGAGAGACATAGCTTTAGTG 1375
Query 1430 AATAAGAGTTGTGATTTCTTGAGAGGTGAGTACCATGTGCCGCCTTGTTGGAGACAAGAT 1489
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1376 AATAAGAGTTGTGATTTCTTGAGAAGTGAGTACCATGTGCCGCCTTGTTGGAGACAAGAC 1435
Query 1490 GAGAACAAAGGTATGGTCAAGAACGGCGATGGACAGTGGGTTCTTCCGGACCGACCACTG 1549
||||||||||| |||||||||| | ||||||||| ||||||||| ||||||||||||| |
Sbjct 1436 GAGAACAAAGGGATGGTCAAGAGCAGCGATGGACGGTGGGTTCTGCCGGACCGACCACAG 1495
Query 1550 CTTGAACCTCACGGACCGGAGGATATCGCTCATCATCTTCAACAAGTTCTTGGGAAGGTT 1609
|| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1496 CTCGAACCTCACCGACCGGAGGATATCGCTCATCATCTTCAACTAGTTCTTGGGAAGGTT 1555
Query 1610 AACGATGATAATTTTAAACCCACAACGACTTAAGTCGAAAATTAAATATAAATAGTTATA 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 AACGATGATAATTTTAAACCCACAACGACTTAAGTCGAAAATTAAATATAAATAGTTATA 1615
Query 1670 AAAATATTTTCGTAATTAATGTGTGGATCACGTTTGATAAATTGAGTATGTTAGT--GT- 1726
| | || ||| || |||||||| ||||||||||||||||||| ||
Sbjct 1616 A---T------GT-------GTG-GG-TCACGTTTAATAAATTGAGTATGTTAGTTAGTG 1657
Query 1727 TT-GATTAATGATTTAATTAAACTTCTATAATTATGGAGGTCATCACCATCCCCCAT 1782
|| |||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1658 TTTGATTAATGATGCAATTGCACTTCTATAATTATGGAGGCCATCACCATCCCCCAT 1714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66886470220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5