BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51600.1
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923648 jgi|Araly1|923648|scaffold_104929.1 1443 0.0
Ahg479637 jgi|Araly1|479637|fgenesh2_kg.3__2338__AT3G21175.1 719 0.0
> Ahg923648 jgi|Araly1|923648|scaffold_104929.1
Length=950
Score = 1443 bits (781), Expect = 0.0
Identities = 884/934 (95%), Gaps = 6/934 (1%)
Strand=Plus/Plus
Query 447 GTAGATTGATGAAAAGCAACCATGGATGACCTACATGGAAGCAATGCTCGAATG---CAC 503
||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 GTAAATTGATGAATAGCAACCATGGATGACCTACATGGAAGCAATTCTCGAATGCAACAC 60
Query 504 ATTAGAGAAGCTCAAGATCCAATGCATGTGCAATTTGAACATCATGCTTTGCATCACATC 563
||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 61 ATTGGAGAAGCTCAAGATCCAATGCATGTGCAATATGAACATCATGCTTTGCACCACATC 120
Query 564 CACAATGGAAGCGGTATGGTTGATGACCAGGCTGATGATGGCAATGCTGGTGGGATGAGT 623
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 121 CACAATGGAAGCGGTATGGTTGATGATCATGCTGATGATGGCAATGCTGGTGGGATGAGT 180
Query 624 GAGGGTGTGGAAACAGACATTCCTTCTCACCCTGGAAATGTAACTGACAATCGTGGTGAA 683
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GAGGGAGTGGAAACAGACATTCCTTCTCACCCTGGAAATATAACTGACAATCGTGGTGAA 240
Query 684 GTGGTCGACCGTGGTAGTGAACAAGGAGATCAGTTAACATTGTCTTTTCAGGGCCAAGTC 743
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 241 GTGGTTGACCGTGGTAGTGAACAAGGAGATCAGTTGACATTGTCGTTTCAGGGCCAAGTC 300
Query 744 TACGTTTTTGACAGTGTCTTGCCTGAGAAGGTTCAAGCTGTGCTTCTATTATTGGGTGGT 803
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 301 TACGTTTTTGACAGTGTCTTGCCTGAAAAGGTTCAAGCTGTGCTCCTATTATTGGGTGGA 360
Query 804 CGTGAATTACCTCAGGCAGCCCCTCCTGGCCTAGGATCACCTCATCAGAACAACAGAGTA 863
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 361 CGTGAATTACCTCAGGCAGCCCCTCCCGGCCTAGGATCACCTCATCAGAACAATAGAATA 420
Query 864 TCGAGTTTACCTGGTACTCCTCAAAGGTTTAGTATTCCGCAGCGATTAGCTTCTTTGGTC 923
||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 421 TCGAGCTTACCTGGTACTCCTCAAAGGTTTAGTATTCCACAGCGGTTAGCCTCTTTGGTC 480
Query 924 AGATTTCGAGAGAAACGGAAAGGAAGGAATTTTGATAAGAAGATTCGGTATACAGTCCGC 983
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 481 AGATTTCGGGAGAAACGGAAAGGGAGGAATTTTGATAAGAAGATTCGGTATACAGTTCGC 540
Query 984 AAGGAGGTAGCTTTGAGGATGCAACGCAATAAAGGTCAGTTCACATCTGCCAAGTCAAAC 1043
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGGAGGTGGCTTTGAGGATGCAACGCAATAAAGGTCAGTTCACATCTGCCAAGTCAAAC 600
Query 1044 AATGATGAAGCTGCATCTGCTGGATCTAGCTGGGGGTCGAATCAAACCTGGGCCATAGAA 1103
||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 AATGACGAAGTTGCATCTGCTGGATCTAGCTGGGGGTCGAATCAAACCTGGGCTATAGAA 660
Query 1104 AGTAGTGAGGCTCAGCATCAAGAGATCTCATGTCGGCACTGTGGAATTGGCGAGAAGTCA 1163
|||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 661 GGTAGCGAGGCTCAGCATCAAGAGATCTCATGTCGACACTGTGGAATCGGTGAGAAGTCA 720
Query 1164 ACTCCAATGATGCGACGTGGACCTGCCGGGCCAAGAACACTTTGCAATGCATGTGGACTT 1223
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 ACTCCAATGATGAGGCGTGGACCTGCAGGGCCAAGAACACTTTGCAATGCATGTGGACTT 780
Query 1224 ATGTGGGCAAACAAGGGTGCTTTTAGGGACTTATCCAAAGCCTCTCCTCAAACAGCCCAG 1283
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 781 ATGTGGGCAAACAAGGGTGCTCTTAGGGACTTATCCAAAGCCTCTCCTCAAACAGCACAA 840
Query 1284 AATCTTCCTTTAAATAAGAATGAAGATGCAAATCTTGAGACTGATCATCAAATAATGATA 1343
||||||||||||||||||||||| ||||||||||| ||||||||||| || | ||||||
Sbjct 841 AATCTTCCTTTAAATAAGAATGAGGATGCAAATCTCGAGACTGATCA--AA-TGATGATA 897
Query 1344 ACAGTGGCCAATGACATAAGCAACTCACAGTGAG 1377
||||||||||||||||||||||||||||||||||
Sbjct 898 ACAGTGGCCAATGACATAAGCAACTCACAGTGAG 931
> Ahg479637 jgi|Araly1|479637|fgenesh2_kg.3__2338__AT3G21175.1
Length=1304
Score = 719 bits (389), Expect = 0.0
Identities = 756/928 (81%), Gaps = 45/928 (5%)
Strand=Plus/Plus
Query 465 ACCATGGATGACCTACATGGAAGCAATGCTCGAATGCACATTAGAGAAGCTCAAGATCCA 524
||||||||||| || ||||||| ||||| ||| ||||||||| | | ||| |||||||||
Sbjct 165 ACCATGGATGAACTTCATGGAAACAATGGTCGTATGCACATTGGCGTAGCGCAAGATCCA 224
Query 525 ATGCATGTGCAATTTGAACATCA-TGCTTTGCATCACATCCACAATGGAAGCGGTATGGT 583
||||||||||| | ||| ||||| || ||||| || ||| ||||||||| ||||||| |
Sbjct 225 ATGCATGTGCAGTATGATCATCACGGC-TTGCACCATATCGACAATGGAAACGGTATGAT 283
Query 584 TGATGACCAGGCTGATGATGGCAATGCTGGTGGGAT-GAGTGAGGGTGTGGAAACAGACA 642
||||| | | || | | || ||||||||| || ||| || ||||| |||||||
Sbjct 284 GGATGA--A--C--AT-A---C--TGATGGTGGGATGGA-TGAAGGAGTGGAGACAGACA 330
Query 643 TTCCTTCTCACCCTGGAAATGTAACTGACAATCGTGGTGAAGTGGTCGACCGTGGTAGTG 702
||||||| ||||||||||| | | |||| ||||| |||||||| || |||||||||| ||
Sbjct 331 TTCCTTCCCACCCTGGAAACGCAGCTGATAATCGCGGTGAAGTTGTAGACCGTGGTATTG 390
Query 703 AACAA-GGAGATCAGTTAACATTGTCTTTTCAGGGCCAAGTCTACGTTTTTGACAGTGTC 761
|| || |||||||| || |||||||| || ||||| ||||| || ||||||||| |||||
Sbjct 391 AA-AATGGAGATCAATTGACATTGTCATTCCAGGGACAAGTTTATGTTTTTGACCGTGTC 449
Query 762 TTGCCTGAGAAGGTTCAAGCTGTGCTTCTATTA-TTGGGTGGTCGTGAATTACCTCAGGC 820
| ||||||||||||||||||||| ||| | ||| || ||||| |||||| |||| ||| |
Sbjct 450 TCGCCTGAGAAGGTTCAAGCTGTCCTTTTGTTACTT-GGTGGACGTGAAGTACCACAGAC 508
Query 821 AGC-CCC-TCCTGGCCTAGGATCACCTCATCAGAACAACAGAGTATC-GAGTTTACCTGG 877
| | ||| | | |||||||||||||||||||| ||| || ||| | | || || ||||
Sbjct 509 A-CTCCCGACAT-CCCTAGGATCACCTCATCAGATCAATAGGGTA-CTGGGTCTATCTGG 565
Query 878 TACTCCTCAAAGGTTTAGTATTCCGCAGCGATTAGCTTCTTTGGTCAGATTTCGAGAGAA 937
|||||||||| || |||| | |||||||| |||||||||||| |||||||| | |||||
Sbjct 566 TACTCCTCAACGGCTTAGCGTCCCGCAGCGGTTAGCTTCTTTGCTCAGATTTAGGGAGAA 625
Query 938 ACGGAAAGGAAGGAATTTTGATAAGA-AGATTCGGTATACAGTCCGCAAGGAGGTAGCTT 996
||| ||||| |||||||||||||||| | ||||| || |||||| | || |||||||| |
Sbjct 626 ACGAAAAGGGAGGAATTTTGATAAGACA-ATTCGCTACACAGTCAGGAAAGAGGTAGCCT 684
Query 997 TGAGGATGCAACGCAATAAAGGTCAGTTCACATCTGCCAAGTCAAACAATGATGAAGCTG 1056
|||| |||||||| || ||||| ||||||||||| || || |||| ||||||||| |||
Sbjct 685 TGAGAATGCAACGTAAGAAAGGACAGTTCACATCGGCTAAATCAAGCAATGATGATTCTG 744
Query 1057 CATCTGCTGGATCTAG-CTGGGGGTCGAATCA-AACCTGGGCCATAGAAAGTAGTGAGGC 1114
||| ||||||| | |||||||| || || || ||||||||||||| | | |||| |
Sbjct 745 GATCCACTGGATC-GGATTGGGGGTCAAACCAGAA-CTGGGCCATAGAAGGGACTGAGAC 802
Query 1115 TCAGCATCAAGAGATCTCATGTCGGCACTGTGGAATTGGCGAGAAGTCAACTCCAATGAT 1174
|||| | | |||| | | |||||| ||||||||||| | ||||||||||||||||||||
Sbjct 803 TCAGAAGCCAGAGGTTTTATGTCGACACTGTGGAATAAGTGAGAAGTCAACTCCAATGAT 862
Query 1175 GCGACGTGGACCTGCCGGGCCAAGAACACTTTGCAATGCATGTGGACTTATGTGGGCAAA 1234
|||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 863 GCGACGTGGACCTGATGGGCCAAGAACACTTTGTAATGCATGTGGACTAATGTGGGCAAA 922
Query 1235 CAAGGGTGCTTTTAGGGACTTATCCAAAG-CC-TCT-CCTCAAACAGCC-CAGAATCTTC 1290
|||||| || |||| ||||| ||||||| || || ||||||||| || ||| |||| |
Sbjct 923 CAAGGGAACTCTTAGAGACTTGTCCAAAGTCCCTCCACCTCAAACA-CCTCAGCATCTAC 981
Query 1291 CTTTAAATAAGAATGAAGATGCAAATCTTGAGACTGATCATCAAAT-AATGATAACAGTG 1349
|| | ||||||||||| ||| ||||||||||| ||||||| || | |||| | ||
Sbjct 982 CTGTGAATAAGAATGAGGATCCAAATCTTGAGGCTGATCA--AA-TGAATGG-A---GTA 1034
Query 1350 GCCAATGACATAAGCAACTCACAGTGAG 1377
|| ||||||| ||||||||||||||||
Sbjct 1035 GCTGATGACATTAGCAACTCACAGTGAG 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62429911555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5