BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51780.1
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923674 jgi|Araly1|923674|scaffold_104955.1 2172 0.0
Ahg923670 jgi|Araly1|923670|scaffold_104951.1 1583 0.0
> Ahg923674 jgi|Araly1|923674|scaffold_104955.1
Length=1362
Score = 2172 bits (1176), Expect = 0.0
Identities = 1267/1312 (97%), Gaps = 2/1312 (0%)
Strand=Plus/Plus
Query 76 ATCTCTTGATTCACGATGAGTTTCTGCAAATTGGTTTCTTTTGTTTTGATCCTTCACTTA 135
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 ATCTCTTGATTCACAATGAGTTTCTGCAAATTGGTTTCTTTTGTTTTGATCCTTCACTTA 66
Query 136 CTAAACTCGTGTCTGATTTCATGTTCCTCGAATGATTTGTCTCAAATTCCTAAAAATTTC 195
|| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 67 CTCAACTCGTGTCTGATTTCATGTTCCTCGAATGAGTTGTCTCAAATCCCTAAAAAGTTC 126
Query 196 CTTAGTCTAGCTAAAAGAGAAGATTTTTTCGATTGGATGGTTGGAATAAGAAGGAGGATC 255
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 127 CTTAGTCTAGCTAAAAGAGATGATTTTTTCGATTGGATGGTTGGAATAAGAAGGAGGATC 186
Query 256 CACGAGAACCCAGAGTTAGGTTACGAGGAAGTAGAGACATCTAAGCTAGTCAAGACAGAA 315
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 187 CACGAGAACCCAGAATTAGGTTACGAGGAAGTAGAGACATCTAAGCTAGTCAGGACAGAA 246
Query 316 TTGGACAAGATGGGTGTGTCTTATAAGAATCCAGTTGCTGTAACTGGTGTTATTGGATAT 375
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 247 TTGGAGAAGATGGGTGTGTCTTATAAGTATCCAGTTGCTGTAACTGGTGTTATTGGATAT 306
Query 376 GTTGGAACTGGCCATGCCCCCTTTGTTGCTTTGAGGGCTGATATGGATGCACTTCCTATT 435
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GTTGGAACTGGTCATGCCCCCTTTGTTGCTTTGAGGGCTGATATGGATGCACTTCCTATT 366
Query 436 CAGGAAATGGTGGAATGGGAACACAAGAGTAAGATTCCAGGGAAGATGCACGCTTGCGGA 495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CAGGAAATGGTGGAATGGGAACACAAGAGTAAGATTCCAGGGAAGATGCACGCTTGCGGT 426
Query 496 CATGACGCTCACACTACGATGCTCCTCGGTGCTGCAAAGTTGCTCAAAGAACACCAAGAA 555
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CATGACGCTCACCCTACGATGCTCCTCGGTGCTGCAAAGTTGCTCAAAGAACACCAAGAG 486
Query 556 GAGCTACAGGGTACAGTGATTCTGGTTTTCCAACCAGCTGAGGAAGGAGGAGCAGGTGCA 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GAGCTACAGGGTACAGTGATTCTGGTTTTCCAACCAGCTGAGGAAGGAGGAGCAGGTGCA 546
Query 616 AAGAAAATCGTGGAGGCTGGAGTATTGGAGAATGTGGGTGCAATCTTTGGATTACATGTT 675
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 547 AAGAAAATCGTGGAGGCTGGAGTGTTGGAGAATGTGGGTGCAATCTTTGGAATACATGTT 606
Query 676 TCGAATCTATTGGGATTAGGTCAACTGAGCTCAAGAGAGGGTCTATTGATGGCTGGTAGT 735
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 607 TCCAATCTATTGGGATTAGGTCAAGTGAGCTCAAGAGAGGGTCTATTGATGGCTGGTAGT 666
Query 736 GGACGTTTCAAAGCTACGATAAGCGGGAAAGGAGGTCATGCAGCTCTTCCTCAATTCGCC 795
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 667 GGACGTTTCAAAGCTAAGATAAGCGGGAAAGGAGGTCATGCGGCTCTTCCTCAATTCGCC 726
Query 796 ATAGATCCAGTATTGGCAGCTTCAAATGTTATTCTGAGCTTACAACACCTCGTTTCACGA 855
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 727 ATAGATCCAGTATTGGCAGCTTCAAATGTTATTCTGAGCTTACAACACCTGGTTTCGCGA 786
Query 856 GAGGCAGATCCTTTAGACTCGCAGGTGGTTACAGTTGCTACATTTGAAGGCAGTGATGCT 915
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 787 GAGGCAGATCCTTTAGACTCGCAGGTGGTTACAGTTGCTATATTTGAAGGCAGTGATGCT 846
Query 916 TTTAATGTCATTCCCGACTCTGTTACTATCGGTGGCACATTCCGAGCCCTTTTACCTAAA 975
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 847 TTTAATGTCATTCCCGACTCTGTTACTATCGGTGGCACATTCCGAGCCCTTTCACCTAAA 906
Query 976 AGTTTTGAGCAACTCAAGCAAAGAATTGTTCAGGTTATCACAACGCAAGCAAGCGTAAAT 1035
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 907 AGTTTTGAGCAACTCAAGCAAAGAATTGAGCAGGTTATCACAACGCAAGCAAGCGTAAAT 966
Query 1036 ATGTGTAATGCAACAGTTGACTTTCTTGAAGATGAGACTCCTCCTTTCCCGCC-GACTGT 1094
|||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 967 ATGTGTAATGCAACAGTTGACTTTCTTGAAGATGAGACTCCTCCTTTCCCTCCCG-CTGA 1025
Query 1095 GAACAATAAAACCTTGCACCTGTTTTACAAGAACGTTTCAGTGGATATGTTAGGGATTGA 1154
|||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1026 GAACGACAAAGTCTTGCACCTGTTTTACGAGAACGTTTCAGTGGATATGTTAGGGATTGA 1085
Query 1155 GAATTATGTTGAGACGCTACCAGTGATGGTATCAGAGGATTTTGCTTTCTACCAACAAGC 1214
||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |||
Sbjct 1086 GAATTATGTTGAGACGCGACCAGTAATGGTATCAGAGGATTTCGCTTTCTACCAAAAAGA 1145
Query 1215 AATCCCGGGACATTTTAGCTTTGTTGGGATGCAGAACAAATCTCATTCACCAATGGCGAA 1274
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1146 AATGCCGGGACATTTTAGCTTTGTTGGGATGCAGAACAAATCCCATTCACCAATGGCGAA 1205
Query 1275 CCCTCACTCTCCGTTTTTTGAAGTTAATGAAGAATTACTCCCTTATGGTGCTTCCCTTCT 1334
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 CCCTCACTCTCCGTATTTTGAAGTTAATGAAGAATTACTCCCTTATGGTGCTTCCCTTCT 1265
Query 1335 TGCTTCTTTGGCCACAAGATATCTTCTTGACTCATCTTCATCGCCAAATAAA 1386
|||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1266 TGCTTCTTTGGCCACAAGATATCTTCTTGAGTCGTCTTCATCGCCAAATAAA 1317
> Ahg923670 jgi|Araly1|923670|scaffold_104951.1
Length=1363
Score = 1583 bits (857), Expect = 0.0
Identities = 1146/1285 (89%), Gaps = 22/1285 (2%)
Strand=Plus/Plus
Query 91 ATGAGTTTCTGCAAATTGGTTTCTTTTGTTTTGATCCTTCACTTAC-TAAACTCGTGTCT 149
|||||||||||||||| ||||||||||||||||||||||||||| | ||| | || ||||
Sbjct 21 ATGAGTTTCTGCAAATGGGTTTCTTTTGTTTTGATCCTTCACTTGCTTAATC-CGAGTCT 79
Query 150 GATTTCATGTTCCTCGAATGATTTGTCTCAAATTCC-TAAAAATTTCCTTAGTCTAGCTA 208
||||||||||||||| |||| || |||||||| || | ||| ||| |||| | | ||||
Sbjct 80 GATTTCATGTTCCTCTAATGGGTTATCTCAAATCCCATCAAAGTTT-CTTACTTTGGCTA 138
Query 209 AAAGAGAA-GATTTTTTCGATTGGATGGTTGGAATAAGAAGGAGGATCCACGAGAACCCA 267
|||| ||| ||||||||||||||||||||| |||| |||||||| ||||| ||||| |||
Sbjct 139 AAAG-GAATGATTTTTTCGATTGGATGGTTAGAATCAGAAGGAGAATCCATGAGAATCCA 197
Query 268 GAGTTAGGTTACGAGGAAGTAGAGACATCTAAGCTAGTCAAGA-CAGAATTGGACAAGAT 326
||||||||||| ||||||||||||||||||||||| || ||| |||||||||| |||||
Sbjct 198 GAGTTAGGTTATGAGGAAGTAGAGACATCTAAGCTTGT-TAGAGCAGAATTGGAGAAGAT 256
Query 327 GGGTGTGTCTTATAAGAATCCAGTTGCTGTAACTGGTGTTATTGGATATGTTGGAACTGG 386
||||||||||| |||| | ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 257 GGGTGTGTCTTTTAAGTACCCAGTTGCTGTTACTGGTGTTGTTGGATATGTTGGAACTGG 316
Query 387 CCATGCCCCCTTTGTTGCTTTGAGGGCTGATATGGATGCACTTCCTATTCAGGAAATGGT 446
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TCAAGCTCCTTTTGTTGCTTTGAGGGCTGATATGGATGCACTTCCTATTCAGGAAATGGT 376
Query 447 GGAATGGGAACACAAGAGTAAGATTCCAGGGAAGATGCACGCTTGCGGACATGACGCTCA 506
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 377 GGAATGGGAACACAAGAGTAAGGTTCCAGGGAAGATGCACGCTTGTGGACATGACGCTCA 436
Query 507 CACTACGATGCTCCTCGGTGCTGCAAAGTTGCTCAAAGAACACCAAGAAGAGCTACAGGG 566
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 437 CACTACGATGCTCCTCGGTGCTGCAAAGTTGCTCAAAGAACATGAAGAAGAGCTACAGGG 496
Query 567 TACAGTGATTCTGGTTTTCCAACCAGCTGAGGAAGGAGGAGCAGGTGCAAAGAAAATCGT 626
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 497 TACAGTGATTCTGGTTTTCCAACCAGCTGAGGAAGGAGGAGGAGGTGCAAAGAAAATCGT 556
Query 627 GGAGGCTGGAGTATTGGAGAATGTGGGTGCAATCTTTGGATTACATGTTTCGAATCTATT 686
||||||||||||||||||||||||| | |||||||||||||||||||| | |||| |||
Sbjct 557 GGAGGCTGGAGTATTGGAGAATGTGAGCGCAATCTTTGGATTACATGTCACAAATCAATT 616
Query 687 GGGATTAGGTCAACTGAGCTCAAGAGAGGGTCTATTGATGGCTGGTAGTGGACGTTTCAA 746
|| |||||||||| |||||||||||||||||| | || |||||||||| || ||||||
Sbjct 617 GGCATTAGGTCAAGTGAGCTCAAGAGAGGGTCCAATGTTGGCTGGTAGCGGGTTTTTCAA 676
Query 747 AGCTACGATAAGCGGGAAAGGAGGTCATGCAGCTCTTCCTCAATTCGCCATAGATCC-AG 805
||||| ||||||||||||||||||||| |||||||||||||| | |||||||||| |
Sbjct 677 AGCTAAGATAAGCGGGAAAGGAGGTCACGCAGCTCTTCCTCAGCACTCCATAGATCCCA- 735
Query 806 TATTGGCAGCTTCAAATGTTATTCTGAGCTTACAACACCTCGTTTCACGAGAGGCAGATC 865
||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 736 TATTGGCAGCTTCGAATGTTATTGTTAGCTTACAACACCTCGTTTCACGAGAGGCAGATC 795
Query 866 CTTTAGACTCGCAGGTGGTTACAGTTGCTACATTTGAAGGCAGTGATGCTTTTAATGTCA 925
|||||||||| ||||| ||||||||||||| |||||||||| ||| |||||| ||||| |
Sbjct 796 CTTTAGACTCACAGGTTGTTACAGTTGCTAAATTTGAAGGCGGTGGTGCTTTCAATGTGA 855
Query 926 TTCCCGACTCTGTTACTATCGGTGGCACATTCCGAGCCCTTTT-ACCTAAAAGTTTTGA- 983
|||| |||||||||||||||||||| |||||||||||| |||| | ||||||| ||| |
Sbjct 856 TTCCAGACTCTGTTACTATCGGTGGTACATTCCGAGCC-TTTTCAACTAAAAGCTTT-AT 913
Query 984 GCAACTCAAGCAAAGAATTGTTCAGGTTATCACAACGCAAGCAAGCGTAAATATGTGTAA 1043
|||||||||| ||||||||| ||||||||||||| |||||| ||||| |||||||||||
Sbjct 914 GCAACTCAAGAAAAGAATTGAGCAGGTTATCACAAGGCAAGCGAGCGTGAATATGTGTAA 973
Query 1044 TGCAACAGTTGACTTTC-TTGAAGATGAGACTCCTCCTTTCCCGCCGACTGTGAACAATA 1102
||||||||| || |||| ||||||| |||| ||| |||||| || ||||| || | |
Sbjct 974 TGCAACAGTGGA-TTTCATTGAAGAGGAGAAACCTTTTTTCCCACCAACTGTAAATGACA 1032
Query 1103 AA-ACCTTGCACCTGTTTTACAAGAACGTTTCAGTG-GATATGTTAGGGATTGAGAATTA 1160
|| || || |||| ||||| |||||||||||| | | |||||||||||||| ||||||||
Sbjct 1033 AAGAC-TTACACCAGTTTTTCAAGAACGTTTCCG-GCGATATGTTAGGGATCGAGAATTA 1090
Query 1161 TGTTGAGACGCTACCAGTGATGGTATCAGAGGATTT-TGCTTTCTACCAACAAGCAATCC 1219
|| |||| || |||| | |||| ||||||||| || | |||||||||||||||||||||
Sbjct 1091 CGTCGAGATGCAACCATTAATGGGATCAGAGGACTTCT-CTTTCTACCAACAAGCAATCC 1149
Query 1220 CGGGACATTTTAGCTTTGTTGGGATGCAGAACAAATCTCATTCACCAATGGCGAACCCTC 1279
||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||| ||||
Sbjct 1150 CGGGACACTTTAGCTTCGTTGGAATGCAAAACAAAGCTCATTCACCAATGGCGAATCCTC 1209
Query 1280 ACTCTCCGTTTTTTGAAGTTAATGAAGAATTACTCCCTTATGGTGCTTCCCTTCTTGCTT 1339
|||| |||| |||||||||||| |||||| |||| ||||||||||||||||||| |||||
Sbjct 1210 ACTCGCCGTATTTTGAAGTTAACGAAGAACTACTACCTTATGGTGCTTCCCTTCATGCTT 1269
Query 1340 CTTTGGCCACAAGATATCTTCTTGA 1364
| ||||||||||||||||||||||
Sbjct 1270 CCATGGCCACAAGATATCTTCTTGA 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57325818725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5