BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52000.1 Length=2451 Score E Sequences producing significant alignments: (Bits) Value Ahg914363 jgi|Araly1|914363|Al_scaffold_0001_4617 1286 0.0 Ahg474322 jgi|Araly1|474322|fgenesh2_kg.1__4276__AT1G52030.1 514 1e-144 > Ahg914363 jgi|Araly1|914363|Al_scaffold_0001_4617 Length=960 Score = 1286 bits (696), Expect = 0.0 Identities = 835/903 (92%), Gaps = 6/903 (1%) Strand=Plus/Plus Query 1359 AAGTTGGAAGCACAAGGAGGCAATGGAGGAAATCAATGGGACGACGGAACCGATCATGAT 1418 ||||||||||||||||||||||| | |||||||||||||||||||||| | ||||||||| Sbjct 61 AAGTTGGAAGCACAAGGAGGCAAAGAAGGAAATCAATGGGACGACGGAGCTGATCATGAT 120 Query 1419 GGTGTGATGAAGATACATGTTGCAGTTGGTGGTCTAGGAATTGAGCAAAT-TAGATTTGA 1477 ||||| ||||||||||||||||||| |||||||||||||||||| | ||| ||||||||| Sbjct 121 GGTGTTATGAAGATACATGTTGCAGCTGGTGGTCTAGGAATTGAAC-AATGTAGATTTGA 179 Query 1478 TTATGTCAAGAACGGACAGTTGAAGGAAGGACCCTTCCACGGTGTCAAAGGAAGAGGTGG 1537 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 180 TTATGTCAAGAACGGACAGTCAAAGGAAGGACCCTTCCACGGTGTCAAAGGAAGAGGTGG 239 Query 1538 CACTTCAACGATTGAGATTAGCCATCCGGACGAGTATCTTGTTTCCGTCGAGGGGTT-GT 1596 || ||||||| ||| ||| | ||||| || |||||||||||||||||| | ||||| || Sbjct 240 CAGTTCAACGTTTGTGATCAATCATCCCGAAGAGTATCTTGTTTCCGTC-AAGGGTTGGT 298 Query 1597 ACGACTCTTCCAATATCATTCAAGGAATCCAGTTTCAATCCAACAAACACACTTCTCAGT 1656 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 299 ACGACTCTTCCAATATCATTCAAGGAATTCAGTTTAAATCCAACAAACACACTTCTCAGT 358 Query 1657 ACTTTGGATATGAATATTATGGAGATGGTACACAATTTTCACTTCAAGTTAATGAAAAGA 1716 |||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||| |||| Sbjct 359 ACTTTGGATATGTATATTCTGGAGATGGTAAACAATTTTCACTTCAAGTTGATGACAAGA 418 Query 1717 AGATCATTGGTTTCCATGGTTTTGCCGACTCACACCTTAATTCTCTTGGAGCTTATTTCG 1776 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 419 AGATCATTGGTTTCCATGGTTTTGCCGACTCGCACCTTAATTCTCTTGGCGCTTATTTCG 478 Query 1777 TTCCAATCTCATCCTCTTCTTCCTCCTTGACTCCTCCTCCCAACAAAGTTAAAGCTCAAG 1836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TTCCAATCTCATCCTCTTCTTCCTCCTTGACTCCTCCTCCCAACAAAGTTAAAGCTCAAG 538 Query 1837 GAGGAAGTTATGGAGAAACATTTGACGATGGTGCTTTCGATCATGTAAGAAAGGTTTATG 1896 |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 539 GAGGAAATTATGGAGAAACCTTTGATGATGGTGCTTTCGATCATGTAAGAAAGGTTTATG 598 Query 1897 TTGGTCAAGGTGATTCTGGTGTAGCTTATGTCAAGTTCGATTATGAAAAAGACGGTAAAA 1956 |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| Sbjct 599 TTGGTCAAGGTGATTCCGGTGTAGCTTATGTCAAGTTCGATTATGAGAAAGACGGGAAAA 658 Query 1957 -AGGAGACACAAGAACATGGAAAAATGACATTGTCAGGAACAGAGGAGTTTGAGGTTGAT 2015 || |||||| || |||||| |||||||||||| || ||||||||||||||||||||| Sbjct 659 TAG-AGACACGTGAGCATGGACAAATGACATTGTTAGCTACAGAGGAGTTTGAGGTTGAT 717 Query 2016 TCAGACGATTACATAACATCAATGGAGGTTTATGTCGACAAAGTCTACGGTTATAAAAGC 2075 | ||| |||| ||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 718 TTAGATGATTTCATAACATCAATGGAAGTCTATGTCGACAAAGTCTACGGTTATAAAAGC 777 Query 2076 GAAATCGTCATTGCTCTTACCTTCAAGACCTTTAAGGGTGAAACTTCTCCACGTTTTGGA 2135 |||| |||| |||||||||||||||| ||||||||||| |||| || || ||||||||| Sbjct 778 GAAACCGTCGTTGCTCTTACCTTCAAAACCTTTAAGGGCAAAACCTCACCGCGTTTTGGA 837 Query 2136 ATAGAGACTGAGAATAAATATGAAGTTAAAGACGGTAAAGGAGGAAAACTTGCTGGTTTC 2195 |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| Sbjct 838 GTAGAGACTGAGAATAAGTATGAAGTTAAAGATGGTAAAGGAGGAAAACTTTCTGGTTTC 897 Query 2196 CATGGAAAAGCTAGCGATGTTCTTTATGCTATTGGTGCTTATTTCATTCCAGCAGCAAAT 2255 |||||||||||||| ||||||||||||||| |||||||||||||| |||| |||||||| Sbjct 898 CATGGAAAAGCTAGTGATGTTCTTTATGCTCTTGGTGCTTATTTCGCTCCAACAGCAAAT 957 Query 2256 TAG 2258 ||| Sbjct 958 TAG 960 > Ahg474322 jgi|Araly1|474322|fgenesh2_kg.1__4276__AT1G52030.1 Length=2186 Score = 514 bits (278), Expect = 1e-144 Identities = 423/492 (86%), Gaps = 14/492 (3%) Strand=Plus/Plus Query 1766 AGCTTATTTCGTTCCAATCTCATCCTCTTCTTCCTCCTTGACTCCTCCTCCCAACAAAGT 1825 ||||||||| | || ||||| |||||||| | ||||||| |||||||||||||||| Sbjct 1176 AGCTTATTTTGCACCCATCTCTTCCTCTTC-T--TCCTTGA---CTCCTCCCAACAAAGT 1229 Query 1826 TAAAGCTCAAGGAGGAAGTTATGGAGAAACATTTGACGATGGTGCTTTCGATCATGTAAG 1885 ||||||||||||||| | ||| |||||||| |||||||||||||| ||||||||||| Sbjct 1230 GGAAGCTCAAGGAGGAAATGGTGGGGAAACATTCGACGATGGTGCTTTTGATCATGTAAG 1289 Query 1886 AAAGGTTTATGTTGGTCAAGGTGATTCTGGTGTAGCTTATGTCAAGTTCGATTATGAAAA 1945 ||||||||||||||||||||| || || |||||| |||||||||| ||||| || ||||| Sbjct 1290 AAAGGTTTATGTTGGTCAAGGCGAGTCCGGTGTAACTTATGTCAAATTCGAATACGAAAA 1349 Query 1946 AGAC-GGTAAAAAG-GAGACACAAGAACATGGAAAAATGACATTGTCAGGAACAGAGGAG 2003 |||| || |||| | ||||||| ||| ||||| ||||||||||||| ||||||||||||| Sbjct 1350 AGACAGG-AAAA-GTGAGACACGAGAGCATGGTAAAATGACATTGTTAGGAACAGAGGAG 1407 Query 2004 TTTGAGGTTGATTCAGACGATTACATAACATCAATGGAGGTTTATGTCGACAAAGTCTAC 2063 ||||||||||||||||| |||||||| |||||| | | |||| |||||||||||||| Sbjct 1408 TTTGAGGTTGATTCAGATGATTACATCACATCAGTTCAAGTTTCTGTCGACAAAGTCTTT 1467 Query 2064 GGTTATAAAAGCGAAATCGTCATTGCTCTTACCTTCAAGACCTTTAAGGGTGAAACTTCT 2123 |||||||| ||||||||||||| ||||||| ||||||||||||||||||| |||| || Sbjct 1468 GGTTATAACAGCGAAATCGTCACTGCTCTTGTCTTCAAGACCTTTAAGGGTAAAACCTCA 1527 Query 2124 CCA-CGTTTTGGAATAGAGACTGAGAATAAATAT-GAAGTTAAAGACGGTAAAGGAGGAA 2181 | | | ||||||||| | ||||||||| |||| | ||| ||||||||||||| ||||||| Sbjct 1528 C-AGCCTTTTGGAATGGTGACTGAGAAGAAAT-TCGAACTTAAAGACGGTAAGGGAGGAA 1585 Query 2182 AACTTGCTGGTTTCCATGGAAAAGCTAGCGATGTTCTTTATGCTATTGGTGCTTATTTCA 2241 |||||||||| |||||||| |||||||| |||||||| |||||| |||||||||||||| Sbjct 1586 AACTTGCTGGATTCCATGGGAAAGCTAGTGATGTTCTGTATGCTCTTGGTGCTTATTTCG 1645 Query 2242 TTCCAGCAGCAA 2253 |||| || ||| Sbjct 1646 CTCCAACAACAA 1657 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92368844125 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5